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13_1_40cm_4_scaffold_3285

Search features with annotation key words

Displaying 29 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_40cm_4_scaffold_3285_1
R_Gemmatimonadetes_71_11, Gemmatimonadetes, Bacteria

Not on your lists

comp(3..290)
DNA (288bp) protein (96aa)
dnaB; replicative DNA helicase (EC:3.6.1.-); K02314 replicative DNA helicase [EC:3.6.4.12] Tax=RIFCSPLOWO2_02_FULL_Gemmatimonadetes_71_11_curated
Replicative DNA helicase n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A918_GEMAT
replicative DNA helicase
13_1_40cm_4_scaffold_3285_2
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

comp(256..1041)
DNA (786bp) protein (262aa)
putative DNA glycosylase; K02334 DNA polymerase bacteriophage-type [EC:2.7.7.7] Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
Putative DNA glycosylase n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A919_GEMAT
putative DNA glycosylase
13_1_40cm_4_scaffold_3285_3
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

Not on your lists

comp(1038..2231)
DNA (1194bp) protein (398aa)
Phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase n=1 Tax=Thermaerobacter subterraneus DSM 13965 RepID=K6QBJ9_9FIRM
phosphopantothenoylcysteine decarboxylase/phosphopantothenate/cysteine ligase
Phosphopantothenoylcysteine decarboxylase/phosphopantothenate/cysteine ligase {ECO:0000313|EMBL:AHG90856.1}; TaxID=861299 species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS7
13_1_40cm_4_scaffold_3285_4
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

comp(2231..2443)
DNA (213bp) protein (71aa)
Putative RNA polymerase omega subunit n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A920_GEMAT
rpoZ; putative RNA polymerase omega subunit Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
rpoZ; putative RNA polymerase omega subunit
13_1_40cm_4_scaffold_3285_5
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

comp(2443..3132)
DNA (690bp) protein (230aa)
gmk; guanylate kinase (EC:2.7.4.8); K00942 guanylate kinase [EC:2.7.4.8] Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
gmk; guanylate kinase (EC:2.7.4.8)
Guanylate kinase n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A921_GEMAT
13_1_40cm_4_scaffold_3285_6
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

comp(3129..3998)
DNA (870bp) protein (290aa)
Uncharacterized protein n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A922_GEMAT
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
Conserved hypothetical protein CHP00255
13_1_40cm_4_scaffold_3285_7
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

Not on your lists

comp(4050..5846)
DNA (1797bp) protein (599aa)
Tax=RBG_16_Gemmatimonadetes_66_8_curated
13_1_40cm_4_scaffold_3285_8
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

comp(5843..7336)
DNA (1494bp) protein (498aa)
pepA; cytosol aminopeptidase (EC:3.4.11.1); K01255 leucyl aminopeptidase [EC:3.4.11.1] Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
leucyl aminopeptidase (EC:3.4.11.1)
Probable cytosol aminopeptidase n=1 Tax=Rubrobacter xylanophilus (strain DSM 9941 / NBRC 16129) RepID=Q1AWY8_RUBXD
13_1_40cm_4_scaffold_3285_9
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

Not on your lists

comp(7338..8045)
DNA (708bp) protein (236aa)
icd; isocitrate dehydrogenase, nADP-dependent; K00031 isocitrate dehydrogenase [EC:1.1.1.42] Tax=RBG_16_Gemmatimonadetes_66_8_curated
isocitrate dehydrogenase (NADP) (EC:1.1.1.42)
Isocitrate dehydrogenase [NADP] id=3661145 bin=GWA2_Planctomycete_KSU_39_15 species=planctomycete KSU-1 genus=unknown taxon_order=Planctomycetales taxon_class=Planctomycetia phylum=Planctomycetes tax=GWA2_Planctomycete_KSU_39_15 organism_group=Planctomycetes
13_1_40cm_4_scaffold_3285_10
Cupriavidus sp. SK-3, Cupriavidus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8908..9960
DNA (1053bp) protein (351aa)
Uncharacterized protein {ECO:0000313|EMBL:KDP87240.1}; TaxID=1470558 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Cupriavidus.;" source="Cupriavidus sp. SK
Uncharacterized protein id=4040233 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_40cm_4_scaffold_3285_11
unknown

Not on your lists

9976..10521
DNA (546bp) protein (182aa)

This feature has no annotations

13_1_40cm_4_scaffold_3285_12
unknown

Not on your lists

10525..11082
DNA (558bp) protein (186aa)

This feature has no annotations

13_1_40cm_4_scaffold_3285_13
Stigmatella aurantiaca, Stigmatella, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11135..11575
DNA (441bp) protein (147aa)
Peptidase families S8 and S53 domain protein n=1 Tax=Stigmatella aurantiaca (strain DW4/3-1) RepID=E3FTS5_STIAD
peptidase families s8 and s53 domain-containing protein
Peptidase families S8 and S53 domain protein {ECO:0000313|EMBL:ADO70877.1}; TaxID=378806 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Cystobacterineae; Cystobacteraceae; Stigm
13_1_40cm_4_scaffold_3285_14
unknown

Not on your lists

comp(11576..11938)
DNA (363bp) protein (121aa)

This feature has no annotations

13_1_40cm_4_scaffold_3285_15
unknown

Not on your lists

comp(11996..12388)
DNA (393bp) protein (131aa)

This feature has no annotations

13_1_40cm_4_scaffold_3285_16
R_RIF_OD1_09_49_22, RIF-OD1-9, Parcubacteria, Bacteria

Not on your lists

comp(12500..13222)
DNA (723bp) protein (241aa)
Uncharacterized protein n=1 Tax=Paenibacillus alvei A6-6i-x RepID=S9UQD0_PAEAL
lipoprotein Tax=RIFCSPHIGHO2_01_FULL_RIF_OD1_09_49_22_curated
13_1_40cm_4_scaffold_3285_17
Fulvivirga imtechensis, Fulvivirga, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

comp(13292..15355)
DNA (2064bp) protein (688aa)
Uncharacterized protein n=1 Tax=Fulvivirga imtechensis AK7 RepID=L8JJ95_9BACT
Uncharacterized protein {ECO:0000313|EMBL:ELR68870.1}; TaxID=1237149 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Flammeovirgaceae; Fulvivirga.;" source="Fulvivirga imtechensis AK7.;"
13_1_40cm_4_scaffold_3285_trna_1
unknown

Not on your lists

comp(15499..15581)
DNA (83bp)
transferRNA
13_1_40cm_4_scaffold_3285_18
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

comp(15588..15896)
DNA (309bp) protein (103aa)
Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
13_1_40cm_4_scaffold_3285_19
unknown

Not on your lists

16109..16561
DNA (453bp) protein (151aa)

This feature has no annotations

13_1_40cm_4_scaffold_3285_20
Leptonema illini, Leptonema, Spirochaetia, Spirochaetes, Bacteria

Not on your lists

comp(16592..17134)
DNA (543bp) protein (181aa)
Uncharacterized protein n=1 Tax=Leptonema illini DSM 21528 RepID=H2CCH2_9LEPT
Uncharacterized protein {ECO:0000313|EMBL:EHQ07432.1}; Flags: Precursor;; TaxID=929563 species="Bacteria; Spirochaetes; Leptospirales; Leptospiraceae; Leptonema.;" source="Leptonema illini DSM 21528.;
13_1_40cm_4_scaffold_3285_21
unknown

Not on your lists

comp(17134..17577)
DNA (444bp) protein (148aa)

This feature has no annotations

13_1_40cm_4_scaffold_3285_22
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

Not on your lists

comp(17574..17741)
DNA (168bp) protein (56aa)
RNA polymerase sigma factor n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A927_GEMAT
RNA polymerase ECF-type sigma factor; K03088 RNA polymerase sigma-70 factor, ECF subfamily Tax=RBG_16_Gemmatimonadetes_66_8_curated
RNA polymerase ECF-type sigma factor
13_1_40cm_4_scaffold_3285_23
RLO_Deltaproteobacteria_60_19, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18215..18814
DNA (600bp) protein (200aa)
transcriptional regulator Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_60_19_curated
TetR-family transcriptional regulator id=1804082 bin=GWD2_Deltaproteobacteria_55_8 species=RBG1 genus=RBG1 taxon_order=RBG1 taxon_class=RBG1 phylum=Zixibacteria tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
TetR family transcriptional regulator
13_1_40cm_4_scaffold_3285_24
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

Not on your lists

18821..19636
DNA (816bp) protein (272aa)
3-hydroxybutyryl-CoA dehydratase (EC:4.2.1.17) Tax=RBG_16_Gemmatimonadetes_66_8_curated
3-hydroxybutyryl-CoA dehydratase (EC:4.2.1.17)
Enoyl-CoA hydratase/isomerase n=1 Tax=candidate division ZIXI bacterium RBG-1 RepID=T0L6T3_9BACT
13_1_40cm_4_scaffold_3285_25
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

Not on your lists

19633..21060
DNA (1428bp) protein (476aa)
Aldehyde Dehydrogenase n=1 Tax=candidate division ZIXI bacterium RBG-1 RepID=T0MJ64_9BACT
NAD-dependent aldehyde dehydrogenase Tax=RBG_16_Gemmatimonadetes_66_8_curated
NAD-dependent aldehyde dehydrogenase
13_1_40cm_4_scaffold_3285_26
R_Acidobacteria_68_18, Acidobacteria, Bacteria

Not on your lists

21089..22279
DNA (1191bp) protein (397aa)
acetyl-CoA acetyltransferase (EC:2.3.1.9); K00626 acetyl-CoA C-acetyltransferase [EC:2.3.1.9] Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_68_18_curated
acetyl-CoA acetyltransferase (EC:2.3.1.9)
Thiolase id=4205783 bin=GWC2_Syntrophus__56_31 species=unknown genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Syntrophus__56_31 organism_group=Deltaproteobacteria organism_desc=Good +
13_1_40cm_4_scaffold_3285_27
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

Not on your lists

22279..23037
DNA (759bp) protein (253aa)
enoyl-CoA hydratase/isomerase Tax=RBG_16_Gemmatimonadetes_66_8_curated
Enoyl-CoA hydratase/isomerase id=4793456 bin=GWA2_Methylomirabilis_73_35 species=Cupriavidus metallidurans genus=Cupriavidus taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
phenylacetate degradation, enoyl-CoA hydratase paaB
13_1_40cm_4_scaffold_3285_28
R_Gemmatimonadetes_71_11, Gemmatimonadetes, Bacteria

Not on your lists

23037..23582
DNA (546bp) protein (182aa)
PhaF protein; K15512 benzoyl-CoA 2,3-dioxygenase component B [EC:1.14.12.21] Tax=RIFCSPLOWO2_02_FULL_Gemmatimonadetes_71_11_curated
Benzoyl-CoA oxygenase component B id=1975393 bin=GWD2_Deltaproteobacteria_55_8 species=mine drainage metagenome genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
benzoyl-CoA oxygenase component B
Displaying 29 items

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