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13_1_40cm_4_scaffold_3398

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Displaying items 1-30 of 36 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_40cm_4_scaffold_3398_1
RBG_16_Acidobacteria_68_9_curated, Acidobacteria, Bacteria

Not on your lists

2..163
DNA (162bp) protein (54aa)
RNA polymerase sigma factor n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A8U9_GEMAT
rpoN; RNA polymerase sigma factor; K03092 RNA polymerase sigma-54 factor Tax=RBG_16_Acidobacteria_68_9_curated
rpoN; RNA polymerase sigma factor
13_1_40cm_4_scaffold_3398_2
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

160..1170
DNA (1011bp) protein (337aa)
putative glycosyltransferase (EC:2.4.-.-) Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
Putative glycosyltransferase n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A8U8_GEMAT
glycosyl transferase family 2
13_1_40cm_4_scaffold_3398_3
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

Not on your lists

comp(1167..2363)
DNA (1197bp) protein (399aa)
group 1 glycosyl transferase Tax=RBG_16_Gemmatimonadetes_66_8_curated
group 1 family glycosyltransferase id=7201127 bin=TA06_GWE2_final species=TA06 genus=TA06 taxon_order=TA06 taxon_class=TA06 phylum=TA06 tax=TA06_GWE2_final organism_group=TA06
Glycosyltransferase
13_1_40cm_4_scaffold_3398_4
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

Not on your lists

2405..3037
DNA (633bp) protein (211aa)
hypothetical protein; K07027 Tax=RBG_16_Gemmatimonadetes_66_8_curated
Putative methyltransferase type 11 id=2856207 bin=GWF1_Spirochaetes_51_8 species=Candidatus Kuenenia stuttgartiensis genus=Candidatus Kuenenia taxon_order=Candidatus Brocadiales taxon_class=Planctomycetia phylum=Planctomycetes tax=GWF1_Spirochaetes_51_8 organism_group=Spirochaetes organism_desc=Novel clade
methyltransferase type 11
13_1_40cm_4_scaffold_3398_5
R_Gemmatimonadetes_71_11, Gemmatimonadetes, Bacteria

Not on your lists

3034..3948
DNA (915bp) protein (305aa)
Hypothetical membrane protein n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A8U6_GEMAT
hypothetical membrane protein; K07027 Tax=RIFCSPLOWO2_02_FULL_Gemmatimonadetes_71_11_curated
hypothetical membrane protein
13_1_40cm_4_scaffold_3398_6
GWC2_Gemmatimonadetes_71_10_curated, Gemmatimonadetes, Bacteria

Not on your lists

3945..6296
DNA (2352bp) protein (784aa)
Hypothetical membrane protein n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A770_GEMAT
hypothetical membrane protein Tax=GWC2_Gemmatimonadetes_71_10_curated
hypothetical membrane protein
13_1_40cm_4_scaffold_3398_7
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

6289..7011
DNA (723bp) protein (241aa)
putative polyprenol-phosphate mannosyltransferase; K00721 dolichol-phosphate mannosyltransferase [EC:2.4.1.83] Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
Putative polyprenol-phosphate mannosyltransferase n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A8U4_GEMAT
putative polyprenol-phosphate mannosyltransferase
13_1_40cm_4_scaffold_3398_8
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

Not on your lists

6963..7850
DNA (888bp) protein (296aa)
dapE; diaminopimelate epimerase (EC:5.1.1.7); K01778 diaminopimelate epimerase [EC:5.1.1.7] Tax=RBG_16_Gemmatimonadetes_66_8_curated
Diaminopimelate epimerase n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=DAPF_GEMAT
Diaminopimelate epimerase
13_1_40cm_4_scaffold_3398_9
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

comp(7924..8598)
DNA (675bp) protein (225aa)
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
13_1_40cm_4_scaffold_3398_trna_2
unknown

Not on your lists

comp(8681..8754)
DNA (74bp)
transferRNA
13_1_40cm_4_scaffold_3398_10
Myxococcus fulvus, Myxococcus, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8777..9313)
DNA (537bp) protein (179aa)
Adenine phosphoribosyltransferase {ECO:0000256|HAMAP-Rule:MF_00004, ECO:0000256|SAAS:SAAS00084274}; Short=APRT {ECO:0000256|HAMAP-Rule:MF_00004};; EC=2.4.2.7 {ECO:0000256|HAMAP-Rule:MF_00004, ECO:0000
Adenine phosphoribosyltransferase n=1 Tax=Myxococcus fulvus (strain ATCC BAA-855 / HW-1) RepID=F8CHW6_MYXFH
adenine phosphoribosyltransferase
13_1_40cm_4_scaffold_3398_11
GWC2_Gemmatimonadetes_71_10_curated, Gemmatimonadetes, Bacteria

Not on your lists

comp(9329..9601)
DNA (273bp) protein (91aa)
acylphosphatase; K01512 acylphosphatase [EC:3.6.1.7] Tax=GWC2_Gemmatimonadetes_71_10_curated
acylphosphatase (EC:3.6.1.7)
Acylphosphatase n=1 Tax=Haemophilus pittmaniae HK 85 RepID=F9QC67_9PAST
13_1_40cm_4_scaffold_3398_12
Geobacter sp. M21, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9609..10250)
DNA (642bp) protein (214aa)
SNARE associated Golgi protein-related protein n=1 Tax=Geobacter sp. (strain M21) RepID=C6E083_GEOSM
hypothetical protein
SNARE associated Golgi protein-related protein {ECO:0000313|EMBL:ACT16699.1}; TaxID=443144 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" sour
13_1_40cm_4_scaffold_3398_13
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

comp(10243..10893)
DNA (651bp) protein (217aa)
pcm; protein-L-isoaspartate O-methyltransferase (EC:2.1.1.77); K00573 protein-L-isoaspartate(D-aspartate) O-methyltransferase [EC:2.1.1.77] Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
Protein-L-isoaspartate O-methyltransferase n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A8T8_GEMAT
Protein-L-isoaspartate O-methyltransferase
13_1_40cm_4_scaffold_3398_14
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

Not on your lists

comp(10875..11624)
DNA (750bp) protein (250aa)
surE; 5'-nucleotidase SurE (EC:3.1.3.5); K03787 5'-nucleotidase [EC:3.1.3.5] Tax=RBG_16_Gemmatimonadetes_66_8_curated
surE; 5'-nucleotidase SurE (EC:3.1.3.5)
5'-nucleotidase SurE n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=SURE_GEMAT
13_1_40cm_4_scaffold_3398_15
RBG_16_Planctomycetes_59_8_curated, Planctomycetes, Bacteria

Not on your lists

comp(11621..12322)
DNA (702bp) protein (234aa)
Glycosyl transferase family 2 n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XG99_9BACT
Glycosyltransferase Tax=RBG_16_Planctomycetes_59_8_curated
glycosyl transferase family protein 16
13_1_40cm_4_scaffold_3398_16
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

Not on your lists

comp(12306..12683)
DNA (378bp) protein (126aa)
MerR family transcriptional regulator n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A8T6_GEMAT
MerR family transcriptional regulator Tax=RBG_16_Gemmatimonadetes_66_8_curated
regulatory protein MerR
13_1_40cm_4_scaffold_3398_17
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

Not on your lists

comp(12680..13699)
DNA (1020bp) protein (340aa)
gpsA; glycerol-3-phosphate dehydrogenase (NAD(P)+); K00057 glycerol-3-phosphate dehydrogenase (NAD(P)+) [EC:1.1.1.94] Tax=RBG_16_Gemmatimonadetes_66_8_curated
Glycerol-3-phosphate dehydrogenase [NAD(P)+] n=1 Tax=Geobacter bemidjiensis (strain Bem / ATCC BAA-1014 / DSM 16622) RepID=GPDA_GEOBB
Glycerol-3-phosphate dehydrogenase [NAD(P)+]
13_1_40cm_4_scaffold_3398_18
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

Not on your lists

comp(13701..14318)
DNA (618bp) protein (206aa)
membrane protein; K08591 glycerol-3-phosphate acyltransferase PlsY [EC:2.3.1.15] Tax=RBG_16_Gemmatimonadetes_66_8_curated
membrane protein; K08591 glycerol-3-phosphate acyltransferase PlsY [EC:2.3.1.15] id=7200806 bin=TA06_GWE2_final species=TA06 genus=TA06 taxon_order=TA06 taxon_class=TA06 phylum=TA06 tax=TA06_GWE2_final organism_group=TA06
membrane protein
13_1_40cm_4_scaffold_3398_19
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

Not on your lists

comp(14315..14866)
DNA (552bp) protein (184aa)
GTPase Der n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=DER_GEMAT
hypothetical protein Tax=RBG_16_Gemmatimonadetes_66_8_curated
GTP-binding protein engA
13_1_40cm_4_scaffold_3398_20
Moorella thermoacetica, Moorella, Thermoanaerobacterales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(14815..15627)
DNA (813bp) protein (271aa)
GTPase Der n=1 Tax=Moorella thermoacetica (strain ATCC 39073) RepID=DER_MOOTA
small GTP-binding protein domain-containing protein
GTPase Der {ECO:0000255|HAMAP-Rule:MF_00195}; GTP-binding protein EngA {ECO:0000255|HAMAP-Rule:MF_00195}; TaxID=264732 species="Bacteria; Firmicutes; Clostridia; Thermoanaerobacterales; Thermoanaeroba
13_1_40cm_4_scaffold_3398_21
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

Not on your lists

comp(15624..17033)
DNA (1410bp) protein (470aa)
Uncharacterized protein n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A8T2_GEMAT
hypothetical protein Tax=RBG_16_Gemmatimonadetes_66_8_curated
hypothetical protein
13_1_40cm_4_scaffold_3398_22
Pyrinomonas methylaliphatogenes, Pyrinomonas, Acidobacteria, Bacteria

Not on your lists

comp(17107..17655)
DNA (549bp) protein (183aa)
hydrolase, partial n=1 Tax=Curtobacterium sp. B18 RepID=UPI0003B4E987
Beta-glucanase/beta-glucan synthetase {ECO:0000313|EMBL:CDM64380.1}; TaxID=454194 species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Pyrinomonas.;" source="Pyrinomonas methylaliphatogenes.
glycoside hydrolase family 16
13_1_40cm_4_scaffold_3398_23
Caldilinea aerophila, Caldilinea, Caldilineales, Caldilineae, Chloroflexi, Bacteria

Not on your lists

comp(17748..18107)
DNA (360bp) protein (120aa)
Putative endo-beta-1,3-glucanase n=1 Tax=Caldilinea aerophila (strain DSM 14535 / JCM 11387 / NBRC 104270 / STL-6-O1) RepID=I0I5F2_CALAS
putative endo-beta-1,3-glucanase
Putative endo-beta-1,3-glucanase {ECO:0000313|EMBL:BAM00490.1}; TaxID=926550 species="Bacteria; Chloroflexi; Caldilineae; Caldilineales; Caldilineaceae; Caldilinea.;" source="Caldilinea aerophila (str
13_1_40cm_4_scaffold_3398_trna_1
unknown

Not on your lists

comp(17987..18058)
DNA (72bp)
transferRNA
13_1_40cm_4_scaffold_3398_24
R_Gemmatimonadetes_71_11, Gemmatimonadetes, Bacteria

Not on your lists

comp(18115..19302)
DNA (1188bp) protein (396aa)
hypothetical protein
Tax=RIFCSPLOWO2_02_FULL_Gemmatimonadetes_71_11_curated
13_1_40cm_4_scaffold_3398_25
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

comp(19649..20833)
DNA (1185bp) protein (395aa)
UPF0272 protein Moth_2512 n=1 Tax=Moorella thermoacetica (strain ATCC 39073) RepID=Y2512_MOOTA id=5223158 bin=16ft_combo_ws3_JS1 species=Moorella thermoacetica genus=Moorella taxon_order=Thermoanaerobacterales taxon_class=Clostridia phylum=Firmicutes tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
TIGR00299 family protein Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
UPF0272 protein
13_1_40cm_4_scaffold_3398_26
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

comp(20862..22109)
DNA (1248bp) protein (416aa)
threonine synthase; K01733 threonine synthase [EC:4.2.3.1] Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
Putative threonine synthase n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A8T1_GEMAT
Pyridoxal-5'-phosphate-dependent protein beta subunit
13_1_40cm_4_scaffold_3398_27
RBG_16_Chloroflexi_48_7_curated, Chloroflexi, Bacteria

Not on your lists

comp(22106..23020)
DNA (915bp) protein (305aa)
hypothetical protein n=1 Tax=candidate division NC10 bacterium UW 659-1-D11 RepID=UPI00035D6406
transposase IS116/IS110/IS902 family protein; K07486 transposase Tax=RBG_16_Chloroflexi_48_7_curated
transposase
13_1_40cm_4_scaffold_3398_28
R_Gemmatimonadetes_71_11, Gemmatimonadetes, Bacteria

Not on your lists

comp(23247..25061)
DNA (1815bp) protein (605aa)
UvrABC system protein C n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=UVRC_GEMAT
uvrC; UvrABC system protein C; K03703 excinuclease ABC subunit C Tax=RIFCSPLOWO2_02_FULL_Gemmatimonadetes_71_11_curated
UvrABC system protein C
Displaying items 1-30 of 36 in total

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