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13_1_40cm_4_scaffold_3557

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Displaying 24 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_40cm_4_scaffold_3557_1
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

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2..976
DNA (975bp) protein (325aa)
TgaE id=4143218 bin=GWA2_Methylomirabilis_73_35 species=Sorangium cellulosum genus=Sorangium taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
alkanal monooxygenase Tax=GWA2_Rokubacteria_73_35_curated
alkanal monooxygenase
13_1_40cm_4_scaffold_3557_2
Candidatus Entotheonella sp. TSY2, Candidatus Entotheonella, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(999..1553)
DNA (555bp) protein (185aa)
Putative F420-dependent oxidoreductase n=1 Tax=Saccharomonospora cyanea NA-134 RepID=H5XRG7_9PSEU
Uncharacterized protein {ECO:0000313|EMBL:ETW94738.1}; TaxID=1429439 species="Bacteria; Proteobacteria; Deltaproteobacteria; Candidatus Entotheonella.;" source="Candidatus Entotheonella sp. TSY2.;"
flavin-dependent oxidoreductase, F420-dependent methylene-tetrahydromethanopterin reductase
13_1_40cm_4_scaffold_3557_3
Candidatus Entotheonella sp. TSY1, Candidatus Entotheonella, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(1550..1930)
DNA (381bp) protein (127aa)
Uncharacterized protein n=1 Tax=Actinomadura madurae LIID-AJ290 RepID=U2N418_9ACTO
Uncharacterized protein {ECO:0000313|EMBL:ETW96391.1}; TaxID=1429438 species="Bacteria; Proteobacteria; Deltaproteobacteria; Candidatus Entotheonella.;" source="Candidatus Entotheonella sp. TSY1.;"
coenzyme F420-dependent N5 N10-methylene tetrahydromethanopterin reductase-like protein
13_1_40cm_4_scaffold_3557_4
Azospirillum thiophilum, Azospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(1954..2613)
DNA (660bp) protein (220aa)
Hydrolase n=1 Tax=Burkholderia sp. SJ98 RepID=K8RBG1_9BURK
Hydrolase {ECO:0000313|EMBL:KJR61602.1}; TaxID=528244 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Azospirillum.;" source="Azospirillum thiophilum.;"
hydrolase
13_1_40cm_4_scaffold_3557_5
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(2610..4055)
DNA (1446bp) protein (482aa)
aminopeptidase P (EC:3.4.11.9) Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
aminopeptidase P (EC:3.4.11.9)
Peptidase M24 id=2937755 bin=GWC2_Methylomirabilis_70_16 species=Chroococcidiopsis thermalis genus=Chroococcidiopsis taxon_order=Pleurocapsales taxon_class=unknown phylum=Cyanobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
13_1_40cm_4_scaffold_3557_6
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

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4076..4948
DNA (873bp) protein (291aa)
NUDIX hydrolase; K03426 NAD+ diphosphatase [EC:3.6.1.22] Tax=GWA2_Rokubacteria_70_23_curated
NUDIX hydrolase id=2592715 bin=GWC2_Methylomirabilis_70_24 species=Geobacter uraniireducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
NUDIX hydrolase
13_1_40cm_4_scaffold_3557_7
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

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4987..6171
DNA (1185bp) protein (395aa)
fadA; 3-ketoacyl-CoA thiolase Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
Probable thiolase id=2937759 bin=GWC2_Methylomirabilis_70_16 species=alpha proteobacterium BAL199 genus=unknown taxon_order=unknown taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
fadA; 3-ketoacyl-CoA thiolase
13_1_40cm_4_scaffold_3557_8
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

6174..6953
DNA (780bp) protein (260aa)
fabG; 3-ketoacyl-ACP reductase (EC:1.1.1.100)
fabG; 3-ketoacyl-ACP reductase Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Short-chain dehydrogenase/reductase SDR id=3352303 bin=GWA2_Methylomirabilis_73_35 species=Bradyrhizobiaceae bacterium SG-6C genus=unknown taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_40cm_4_scaffold_3557_9
GWC2_Rokubacteria_70_16_curated, Rokubacteria, Bacteria

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6950..7459
DNA (510bp) protein (170aa)
Ferripyochelin binding protein (Fbp) id=3864205 bin=GWC2_Methylomirabilis_70_16 species=Thermosediminibacter oceani genus=Thermosediminibacter taxon_order=Thermoanaerobacterales taxon_class=Clostridia phylum=Firmicutes tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
ferripyochelin binding protein (fbp) Tax=GWC2_Rokubacteria_70_16_curated
ferripyochelin binding protein (fbp)
13_1_40cm_4_scaffold_3557_10
Hyalangium minutum, Hyalangium, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

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7824..9749
DNA (1926bp) protein (642aa)
multi-sensor hybrid histidine kinase n=1 Tax=Gemmata obscuriglobus RepID=UPI00016C4C22
Chemotaxis protein methyltransferase CheR {ECO:0000313|EMBL:KFE68323.1}; TaxID=394096 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Cystobacterineae; Cystobacteraceae; Hyalangi
sensor protein
13_1_40cm_4_scaffold_3557_11
RBG_16_NC10_65_8_curated, NC10, Bacteria

Not on your lists

comp(9841..10680)
DNA (840bp) protein (280aa)
hypothetical protein, partial n=1 Tax=Candidatus Poribacteria sp. WGA-4E RepID=UPI00036892EA
3-oxoacyl-ACP reductase Tax=RBG_16_NC10_65_8_curated
3-oxoacyl-ACP reductase
13_1_40cm_4_scaffold_3557_12
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

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10732..11631
DNA (900bp) protein (300aa)
DNA repair photolyase n=1 Tax=Thermaerobacter subterraneus DSM 13965 RepID=K6Q117_9FIRM id=5225484 bin=16ft_combo_ws3_JS1 species=Thermaerobacter subterraneus genus=Thermaerobacter taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
radical SAM protein Tax=RBG_16_RIF_WS3X_71_46_curated
radical SAM protein
13_1_40cm_4_scaffold_3557_13
Sphaerobacter thermophilus, Sphaerobacter, Sphaerobacterales, Sphaerobacteridae, Chloroflexi, Bacteria

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11785..13140
DNA (1356bp) protein (452aa)
Alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen n=1 Tax=Sphaerobacter thermophilus (strain DSM 20745 / S 6022) RepID=D1C4T0_SPHTD
alkyl hydroperoxide reductase
Alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen {ECO:0000313|EMBL:ACZ39247.1}; TaxID=479434 species="Bacteria; Chloroflexi; Sphaerobacteridae; Sphaerobacterales; Sphaerobacteri
13_1_40cm_4_scaffold_3557_14
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

13164..13769
DNA (606bp) protein (202aa)
putative membrane-associated protein Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
hypothetical protein id=14430724 bin=bin3_NC10 tax=bin3_NC10 organism_group=NC10
putative membrane-associated protein
13_1_40cm_4_scaffold_3557_15
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

13893..14612
DNA (720bp) protein (240aa)
GntR family transcriptional regulator; K03710 GntR family transcriptional regulator Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
GntR family transcriptional regulator; K03710 GntR family transcriptional regulator id=14626080 bin=bin7_NC10_sister species=Frankia sp. CN3 genus=Frankia taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=bin7_NC10_sister organism_group=NC10
GntR family transcriptional regulator
13_1_40cm_4_scaffold_3557_16
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

14627..15406
DNA (780bp) protein (260aa)
fixA; electron transfer flavoprotein subunit beta; K03521 electron transfer flavoprotein beta subunit Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Electron transfer flavoprotein, beta subunit id=2475787 bin=GWC2_Methylomirabilis_70_16 species=Ignavibacterium album genus=Ignavibacterium taxon_order=Ignavibacteriales taxon_class=Ignavibacteria phylum=Ignavibacteriae tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
electron transfer flavoprotein beta-subunit
13_1_40cm_4_scaffold_3557_17
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

16051..16410
DNA (360bp) protein (120aa)
etfA2; electron transfer flavoprotein subunit alpha; K03522 electron transfer flavoprotein alpha subunit Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
electron transfer flavoprotein subunit alpha id=14626082 bin=bin7_NC10_sister species=Desulfotomaculum kuznetsovii genus=Desulfotomaculum taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=bin7_NC10_sister organism_group=NC10
etfA2; electron transfer flavoprotein subunit alpha
13_1_40cm_4_scaffold_3557_18
CSP1_6_Rokubacteria, Rokubacteria, Bacteria

Not on your lists

16413..17561
DNA (1149bp) protein (383aa)
acyl-CoA dehydrogenase domain-containing protein; K00248 butyryl-CoA dehydrogenase [EC:1.3.8.1] id=14626083 bin=bin7_NC10_sister species=Anaeromyxobacter dehalogenans genus=Anaeromyxobacter taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=bin7_NC10_sister organism_group=NC10
acyl-CoA dehydrogenase domain-containing protein; K00248 butyryl-CoA dehydrogenase [EC:1.3.8.1] Tax=CSP1_6_Rokubacteria
acyl-CoA dehydrogenase
13_1_40cm_4_scaffold_3557_19
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

17558..19159
DNA (1602bp) protein (534aa)
methylmalonyl-CoA mutase large subunit (EC:5.4.99.2); K01848 methylmalonyl-CoA mutase, N-terminal domain [EC:5.4.99.2] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
methylmalonyl-CoA mutase large subunit (EC:5.4.99.2); K01848 methylmalonyl-CoA mutase, N-terminal domain [EC:5.4.99.2] id=14626084 bin=bin7_NC10_sister species=Anaeromyxobacter dehalogenans genus=Anaeromyxobacter taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=bin7_NC10_sister organism_group=NC10
methylmalonyl-CoA mutase large subunit (EC:5.4.99.2)
13_1_40cm_4_scaffold_3557_20
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

19454..20521
DNA (1068bp) protein (356aa)
branched-chain amino acid aminotransferase (EC:2.6.1.42); K00826 branched-chain amino acid aminotransferase [EC:2.6.1.42] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
branched-chain amino acid aminotransferase (EC:2.6.1.42); K00826 branched-chain amino acid aminotransferase [EC:2.6.1.42] id=14627197 bin=bin7_NC10_sister species=Roseomonas sp. B5 genus=Roseomonas taxon_order=Rhodospirillales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=bin7_NC10_sister organism_group=NC10
Branched-chain amino acid aminotransferase (EC:2.6.1.42)
13_1_40cm_4_scaffold_3557_21
GWC2_Rokubacteria_70_16_curated, Rokubacteria, Bacteria

Not on your lists

20607..21032
DNA (426bp) protein (142aa)
Histidine triad (HIT) protein id=4743717 bin=GWC2_Methylomirabilis_70_24 species=unknown genus=Roseiflexus taxon_order=Chloroflexales taxon_class=Chloroflexi phylum=Chloroflexi tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
histidine triad (HIT) protein; K02503 Hit-like protein involved in cell-cycle regulation Tax=GWC2_Rokubacteria_70_16_curated
histidine triad (hit) protein
13_1_40cm_4_scaffold_3557_22
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

21144..21548
DNA (405bp) protein (135aa)
B12-binding protein; K01849 methylmalonyl-CoA mutase, C-terminal domain [EC:5.4.99.2] id=14626086 bin=bin7_NC10_sister species=Geobacter sulfurreducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=bin7_NC10_sister organism_group=NC10
cobalamin B12-binding domain-containing protein; K01849 methylmalonyl-CoA mutase, C-terminal domain [EC:5.4.99.2] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
(R)-methylmalonyl-CoA mutase, adenosylcobamide-binding subunit
13_1_40cm_4_scaffold_3557_23
R_RIF_OD1_13_60_25, RIF-OD1-13, Parcubacteria, Bacteria

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21576..21725
DNA (150bp) protein (50aa)
Tax=RIFCSPLOWO2_01_FULL_RIF_OD1_13_60_25_curated
13_1_40cm_4_scaffold_3557_24
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

21861..22292
DNA (432bp) protein (144aa)
ivd; isovaleryl-CoA dehydrogenase (EC:1.3.99.10) Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
ivd; isovaleryl-CoA dehydrogenase (EC:1.3.99.10)
Isovaleryl-CoA dehydrogenase id=3618755 bin=GWF2_Methylomirabilis_70_14 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
Displaying 24 items

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