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13_1_40cm_4_scaffold_3727

Search features with annotation key words

Displaying 30 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_40cm_4_scaffold_3727_1
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

comp(3..365)
DNA (363bp) protein (121aa)
hypothetical protein; K03924 MoxR-like ATPase [EC:3.6.3.-] Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
Uncharacterized protein n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A8K6_GEMAT
hypothetical protein
13_1_40cm_4_scaffold_3727_2
RBG_16_Desulfobacca_58_9_curated, Syntrophobacterales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(362..1273)
DNA (912bp) protein (304aa)
Phycocyanin alpha phycocyanobilin lyase n=1 Tax=Methanosarcina barkeri (strain Fusaro / DSM 804) RepID=Q46BI4_METBF
PBS lyase HEAT domain-containing protein Tax=RBG_16_Desulfobacca_58_9_curated
phycocyanin alpha phycocyanobilin lyase
13_1_40cm_4_scaffold_3727_3
unknown

Not on your lists

comp(1533..1919)
DNA (387bp) protein (129aa)

This feature has no annotations

13_1_40cm_4_scaffold_3727_4
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

comp(1919..2074)
DNA (156bp) protein (52aa)
short-chain dehydrogenase/reductase SDR Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
13_1_40cm_4_scaffold_3727_5
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

Not on your lists

comp(2443..3162)
DNA (720bp) protein (240aa)
pseudouridine synthase Rsu; K06178 23S rRNA pseudouridine2605 synthase [EC:5.4.99.22] Tax=RBG_16_Gemmatimonadetes_66_8_curated
Pseudouridine synthase n=1 Tax=Desulfobacca acetoxidans (strain ATCC 700848 / DSM 11109 / ASRB2) RepID=F2NC36_DESAR
pseudouridine synthase Rsu
13_1_40cm_4_scaffold_3727_6
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

comp(3159..3707)
DNA (549bp) protein (183aa)
Segregation and condensation protein B n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A8K4_GEMAT
scpB; segregation and condensation protein B; K06024 segregation and condensation protein B Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
scpB; segregation and condensation protein B
13_1_40cm_4_scaffold_3727_7
GWC2_Gemmatimonadetes_71_10_curated, Gemmatimonadetes, Bacteria

Not on your lists

comp(3682..4356)
DNA (675bp) protein (225aa)
Segregation and condensation protein A n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A8K3_GEMAT
scpA; segregation and condensation protein A; K05896 segregation and condensation protein A Tax=GWC2_Gemmatimonadetes_71_10_curated
chromosome segregation and condensation protein ScpA
13_1_40cm_4_scaffold_3727_8
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

Not on your lists

comp(4353..4517)
DNA (165bp) protein (55aa)
peptidase M50B family protein Tax=RBG_16_Gemmatimonadetes_66_8_curated
13_1_40cm_4_scaffold_3727_9
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

Not on your lists

comp(4586..5083)
DNA (498bp) protein (166aa)
Peptidase M50B family protein n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A8K2_GEMAT
peptidase M50
Peptidase M50 {ECO:0000313|EMBL:AHG90683.1}; TaxID=861299 species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.;"
13_1_40cm_4_scaffold_3727_10
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

Not on your lists


5112..5351
DNA (240bp) protein (80aa)
30S ribosomal protein S20 n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=RS20_GEMAT
rpsT; 30S ribosomal protein S20; K02968 small subunit ribosomal protein S20 Tax=RBG_16_Gemmatimonadetes_66_8_curated
rpsT; 30S ribosomal protein S20
13_1_40cm_4_scaffold_3727_11
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

comp(5401..6162)
DNA (762bp) protein (254aa)
Uncharacterized protein n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A8K0_GEMAT
hypothetical protein
Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
13_1_40cm_4_scaffold_3727_12
R_Gemmatimonadetes_71_11, Gemmatimonadetes, Bacteria

Not on your lists

comp(6155..6787)
DNA (633bp) protein (211aa)
class II aldolase/adducin family protein; K01628 L-fuculose-phosphate aldolase [EC:4.1.2.17] Tax=RIFCSPLOWO2_02_FULL_Gemmatimonadetes_71_11_curated
Class II aldolase/adducin family protein n=2 Tax=Chloroflexus RepID=A9WES5_CHLAA
Ribulose-5-phosphate 4-epimerase-related epimerase and aldolase
13_1_40cm_4_scaffold_3727_13
GWC2_Gemmatimonadetes_71_10_curated, Gemmatimonadetes, Bacteria

Not on your lists

comp(6811..8106)
DNA (1296bp) protein (432aa)
pyrC; dihydroorotase (EC:3.5.2.3); K01465 dihydroorotase [EC:3.5.2.3] Tax=GWC2_Gemmatimonadetes_71_10_curated
Dihydroorotase n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A8J8_GEMAT
dihydroorotase multifunctional complex type
13_1_40cm_4_scaffold_3727_14
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

comp(8103..9095)
DNA (993bp) protein (331aa)
pyrB; aspartate carbamoyltransferase (EC:2.1.3.2); K00609 aspartate carbamoyltransferase catalytic subunit [EC:2.1.3.2] Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
Aspartate carbamoyltransferase n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=PYRB_GEMAT
Aspartate carbamoyltransferase
13_1_40cm_4_scaffold_3727_15
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

comp(9092..9595)
DNA (504bp) protein (168aa)
pyrR; pyrimidine operon regulatory protein/uracil phosphoribosyltransferase (EC:2.4.2.9); K02825 pyrimidine operon attenuation protein / uracil phosphoribosyltransferase [EC:2.4.2.9] Tax=RIFCSPLOWO2_1
Bifunctional protein PyrR n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A8J6_GEMAT
Bifunctional protein pyrR
13_1_40cm_4_scaffold_3727_16
RBG_16_Planctomycetes_43_13_curated, Planctomycetes, Bacteria

Not on your lists

comp(9668..10591)
DNA (924bp) protein (308aa)
glyoxylate reductase (EC:1.1.1.26)
Glyoxylate reductase n=1 Tax=Thermaerobacter marianensis (strain ATCC 700841 / DSM 12885 / JCM 10246 / 7p75a) RepID=E6SM22_THEM7
D-isomer specific 2-hydroxyacid dehydrogenase protein Tax=RBG_16_Planctomycetes_43_13_curated
13_1_40cm_4_scaffold_3727_17
unknown

Not on your lists

comp(10619..10738)
DNA (120bp) protein (40aa)

This feature has no annotations

13_1_40cm_4_scaffold_3727_18
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

comp(10735..11889)
DNA (1155bp) protein (385aa)
citrate (Si)-synthase (EC:2.3.3.1); K01647 citrate synthase [EC:2.3.3.1] Tax=RBG_16_RIF_WS3X_71_46_curated
citrate (Si)-synthase (EC:2.3.3.1)
Citrate synthase n=1 Tax=Haladaptatus paucihalophilus DX253 RepID=E7QXM0_9EURY id=5225332 bin=16ft_combo_ws3_JS1 species=Haladaptatus paucihalophilus genus=Haladaptatus taxon_order=Halobacteriales taxon_class=Halobacteria phylum=Euryarchaeota tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
13_1_40cm_4_scaffold_3727_19
Chondromyces apiculatus, Chondromyces, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12395..13807)
DNA (1413bp) protein (471aa)
hypothetical protein n=1 Tax=Acidobacteriaceae bacterium KBS 89 RepID=UPI000369B1CF
Peptidase M20 {ECO:0000313|EMBL:EYF06850.1}; TaxID=1192034 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Sorangiineae; Polyangiaceae; Chondromyces.;" source="Chondromyces apicu
hypothetical protein
13_1_40cm_4_scaffold_3727_20
Bradyrhizobium japonicum, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13774..14097)
DNA (324bp) protein (108aa)
Uncharacterized protein n=1 Tax=Bradyrhizobium japonicum USDA 6 RepID=G7DC96_BRAJP
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:BAL08024.1}; TaxID=1037409 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium ja
13_1_40cm_4_scaffold_3727_21
GWC2_Gemmatimonadetes_71_10_curated, Gemmatimonadetes, Bacteria

Not on your lists

comp(14094..14936)
DNA (843bp) protein (281aa)
lipoprotein NlpI, contains TPR repeats Tax=GWC2_Gemmatimonadetes_71_10_curated
hypothetical protein id=8267249 bin=CD_OP8_4m species=Gracilimonas tropica genus=Gracilimonas taxon_order=Sphingobacteriales taxon_class=Sphingobacteriia phylum=Bacteroidetes tax=CD_OP8_4m organism_group=OP8 (Aminicenantes)
lipoprotein NlpI, contains TPR repeats
13_1_40cm_4_scaffold_3727_trna_2
unknown

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comp(15731..15817)
DNA (87bp)
transferRNA
13_1_40cm_4_scaffold_3727_trna_1
unknown

Not on your lists

comp(15825..15911)
DNA (87bp)
transferRNA
13_1_40cm_4_scaffold_3727_22
Chondromyces apiculatus, Chondromyces, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15942..17411)
DNA (1470bp) protein (490aa)
Benzoate-CoA ligase family n=1 Tax=Haliangium ochraceum (strain DSM 14365 / JCM 11303 / SMP-2) RepID=D0LVL9_HALO1
Long-chain-fatty-acid--CoA ligase {ECO:0000313|EMBL:EYF05781.1}; TaxID=1192034 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Sorangiineae; Polyangiaceae; Chondromyces.;" source
benzoate-CoA ligase family
13_1_40cm_4_scaffold_3727_23
Haliangium ochraceum, Haliangium, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17426..18175
DNA (750bp) protein (250aa)
Creatininase n=1 Tax=Haliangium ochraceum (strain DSM 14365 / JCM 11303 / SMP-2) RepID=D0LVM0_HALO1
creatininase
Creatininase {ECO:0000313|EMBL:ACY17581.1}; TaxID=502025 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Nannocystineae; Kofleriaceae; Haliangium.;" source="Haliangium ochraceum
13_1_40cm_4_scaffold_3727_24
Ralstonia solanacearum, Ralstonia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18162..18926
DNA (765bp) protein (255aa)
Oxidoreductase n=2 Tax=Ralstonia solanacearum RepID=V5AJJ3_RALSL
putative oxidoreductase (beta-hydroxyacyl-CoA dehydrogenase) protein (abmB)
Putative oxidoreductase (Beta-hydroxyacyl-CoA dehydrogenase) protein (AbmB) {ECO:0000313|EMBL:CBJ39694.1}; TaxID=859655 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkhold
13_1_40cm_4_scaffold_3727_25
Sandaracinus amylolyticus, Sandaracinus, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18934..19314
DNA (381bp) protein (127aa)
Bona fide RidA/YjgF/TdcF/RutC subgroup {ECO:0000313|EMBL:AKF07328.1}; TaxID=927083 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Sorangiineae; Sandaracinaceae; Sandaracinus.;"
Endoribonuclease L-PSP id=3925212 bin=GWC2_Syntrophobacterales_56_13 species=unknown genus=Paracoccus taxon_order=Rhodobacterales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWC2_Syntrophobacterales_56_13 organism_group=Deltaproteobacteria organism_desc=Good +
endoribonuclease L-PSP
13_1_40cm_4_scaffold_3727_26
Chondromyces apiculatus, Chondromyces, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19311..20099
DNA (789bp) protein (263aa)
enoyl-CoA hydratase (EC:4.2.1.17)
Enoyl-CoA hydratase n=1 Tax=Sorangium cellulosum (strain So ce56) RepID=A9FQH6_SORC5
Enoyl-CoA hydratase {ECO:0000313|EMBL:EYF00334.1}; TaxID=1192034 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Sorangiineae; Polyangiaceae; Chondromyces.;" source="Chondromyces
13_1_40cm_4_scaffold_3727_27
Massilia sp. JS1662, Massilia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20099..21235
DNA (1137bp) protein (379aa)
hypothetical protein n=1 Tax=Arhodomonas aquaeolei RepID=UPI000379B90F
Acyl-CoA dehydrogenase {ECO:0000313|EMBL:KGF82116.1}; TaxID=1519190 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Oxalobacteraceae; Massilia.;" source="Massilia sp. JS1662.;"
acyl-CoA dehydrogenase-like protein
13_1_40cm_4_scaffold_3727_28
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

21232..22512
DNA (1281bp) protein (427aa)
oxidoreductase (EC:1.-.-.-); K09461 anthraniloyl-CoA monooxygenase [EC:1.14.13.40] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
oxidoreductase (EC:1.-.-.-)
Probable oxidoreductase n=1 Tax=Sorangium cellulosum (strain So ce56) RepID=A9G078_SORC5
Displaying 30 items

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