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13_1_40cm_4_scaffold_3759

Search features with annotation key words

Displaying items 1-30 of 33 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_40cm_4_scaffold_3759_1
R_Rokubacteria_71_18, Rokubacteria, Bacteria

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3..560
DNA (558bp) protein (186aa)
cytochrome c oxidase subunit I (EC:1.9.3.1); K02274 cytochrome c oxidase subunit I [EC:1.9.3.1] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
cytochrome c oxidase subunit I (EC:1.9.3.1); K02274 cytochrome c oxidase subunit I [EC:1.9.3.1] id=14627498 bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Poribacteria tax=bin7_NC10_sister organism_group=NC10
cytochrome c oxidase, subunit I (EC:1.9.3.1)
13_1_40cm_4_scaffold_3759_2
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists

578..1609
DNA (1032bp) protein (344aa)
Cytochrome oxidase assembly Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
Putative Cytochrome oxidase assembly id=4083676 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
Cytochrome oxidase assembly
13_1_40cm_4_scaffold_3759_3
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

1606..2532
DNA (927bp) protein (309aa)
ctaB; protoheme IX farnesyltransferase (Heme O synthase) (Heme B farnesyltransferase) (EC:2.5.1.-) Tax=GWA2_Rokubacteria_73_35_curated
ctaB; protoheme IX farnesyltransferase (Heme O synthase) (Heme B farnesyltransferase) (EC:2.5.1.-)
Protoheme IX farnesyltransferase id=4083674 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_40cm_4_scaffold_3759_4
unknown

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2529..2627
DNA (99bp) protein (33aa)

This feature has no annotations

13_1_40cm_4_scaffold_3759_5
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

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2624..3292
DNA (669bp) protein (223aa)
Cytochrome c oxidase subunit III subfamily id=4083670 bin=GWA2_Methylomirabilis_73_35 species=Verrucomicrobiae bacterium DG1235 genus=unknown taxon_order=Verrucomicrobiales taxon_class=Verrucomicrobiae phylum=Verrucomicrobia tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
heme/copper-type cytochrome/quinol oxidase, subunit 3 Tax=GWA2_Rokubacteria_73_35_curated
cytochrome c oxidase subunit III
13_1_40cm_4_scaffold_3759_6
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

3289..3555
DNA (267bp) protein (89aa)
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
hypothetical protein id=4083667 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_40cm_4_scaffold_3759_7
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

3552..4169
DNA (618bp) protein (206aa)
cytochrome c oxidase subunit III; K02276 cytochrome c oxidase subunit III [EC:1.9.3.1] Tax=GWA2_Rokubacteria_73_35_curated
Cytochrome c oxidase subunit III id=1881833 bin=GWD2_Deltaproteobacteria_55_8 species=unknown genus=Thermaerobacter taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
cytochrome C oxidase subunit III
13_1_40cm_4_scaffold_3759_8
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

4182..4511
DNA (330bp) protein (110aa)
Caa(3)-type oxidase, subunit IV Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Caa(3)-type oxidase, subunit IV id=4083662 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=Anaeromyxobacter taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
caa(3)-type oxidase, subunit IV
13_1_40cm_4_scaffold_3759_9
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

4651..4911
DNA (261bp) protein (87aa)
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
hypothetical protein id=14429807 bin=bin3_NC10 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Poribacteria tax=bin3_NC10 organism_group=NC10
hypothetical protein
13_1_40cm_4_scaffold_3759_10
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

4923..5669
DNA (747bp) protein (249aa)
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Uncharacterized protein id=3202774 bin=GWC2_Methylomirabilis_70_16 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
putative lipoprotein
13_1_40cm_4_scaffold_3759_11
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

5682..7589
DNA (1908bp) protein (636aa)
putative universal stress protein UspA Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
putative universal stress protein UspA id=14626558 bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Poribacteria tax=bin7_NC10_sister organism_group=NC10
putative universal stress protein UspA
13_1_40cm_4_scaffold_3759_12
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

7949..8983
DNA (1035bp) protein (345aa)
putative heme d1 biosynthesis radical SAM protein NirJ2 Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
radical SAM protein id=14626559 bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Poribacteria tax=bin7_NC10_sister organism_group=NC10
radical SAM domain-containing protein
13_1_40cm_4_scaffold_3759_13
R_Rokubacteria_68_19, Rokubacteria, Bacteria

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9156..9611
DNA (456bp) protein (152aa)
id=14626560 Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_68_19_curated
id=14626560 bin=bin7_NC10_sister tax=bin7_NC10_sister organism_group=NC10
13_1_40cm_4_scaffold_3759_14
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

9608..10492
DNA (885bp) protein (295aa)
Putative ATPase, Mrp homolog id=4388291 bin=GWA2_Methylomirabilis_73_35 species=Nitrospina gracilis genus=Nitrospina taxon_order=Nitrospinales taxon_class=Nitrospinia phylum=Nitrospinae tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
mrp; putative ATPase; K03593 ATP-binding protein involved in chromosome partitioning Tax=GWA2_Rokubacteria_73_35_curated
ParA/MinD ATPase-like protein
13_1_40cm_4_scaffold_3759_15
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(10531..11247)
DNA (717bp) protein (239aa)
hypothetical protein Tax=GWA2_Rokubacteria_73_35_curated
hypothetical protein id=4388236 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_40cm_4_scaffold_3759_16
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(11386..11634)
DNA (249bp) protein (83aa)
id=3659327 Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
id=4123400 bin=GWC2_Methylomirabilis_70_24 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
13_1_40cm_4_scaffold_3759_17
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

12462..12659
DNA (198bp) protein (66aa)
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Putative uncharacterized protein id=4388235 bin=GWA2_Methylomirabilis_73_35 species=Conexibacter woesei genus=Conexibacter taxon_order=Solirubrobacterales taxon_class=Actinobacteria phylum=Actinobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_40cm_4_scaffold_3759_18
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

12656..13528
DNA (873bp) protein (291aa)
Peptidase, M23/M37 family id=4388234 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Poribacteria sp. WGA-A3 genus=unknown taxon_order=unknown taxon_class=unknown phylum=Poribacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein Tax=GWA2_Rokubacteria_73_35_curated
hypothetical protein
13_1_40cm_4_scaffold_3759_19
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(13525..13761)
DNA (237bp) protein (79aa)
Uncharacterized protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Uncharacterized protein id=4388233 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
uncharacterized LOC583265
13_1_40cm_4_scaffold_3759_20
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(13839..14855)
DNA (1017bp) protein (339aa)
Farnesyl-diphosphate farnesyltransferase (EC:2.5.1.21) Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
Farnesyl-diphosphate farnesyltransferase (EC:2.5.1.21)
Farnesyl-diphosphate farnesyltransferase id=3659323 bin=GWC2_Methylomirabilis_70_16 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
13_1_40cm_4_scaffold_3759_21
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(14857..15153)
DNA (297bp) protein (99aa)
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
Uncharacterized protein id=4388230 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein
13_1_40cm_4_scaffold_3759_22
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

15200..16123
DNA (924bp) protein (308aa)
hypothetical protein Tax=GWA2_Rokubacteria_73_35_curated
Putative uncharacterized protein id=3784125 bin=GWC2_Methylomirabilis_70_16 species=unknown genus=Anaeromyxobacter taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
hypothetical protein
13_1_40cm_4_scaffold_3759_23
GWC2_Rokubacteria_70_16_curated, Rokubacteria, Bacteria

Not on your lists

16227..17018
DNA (792bp) protein (264aa)
2-dehydro-3-deoxyglucarate aldolase (EC:4.1.2.-); K02510 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase [EC:4.1.2.-] Tax=GWC2_Rokubacteria_70_16_curated
2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase (EC:4.1.2.-)
Oxidoreductase family protein id=4638236 bin=GWC2_Methylomirabilis_70_16 species=endosymbiont of Riftia pachyptila genus=unknown taxon_order=unknown taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
13_1_40cm_4_scaffold_3759_24
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

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17021..17434
DNA (414bp) protein (138aa)
2SCG61.39; hypothetical protein Tax=GWA2_Rokubacteria_70_23_curated
Pyridoxamine 5'-phosphate oxidase-related FMN-binding protein id=4189583 bin=GWF2_Methylomirabilis_70_14 species=Frankia sp. EUN1f genus=Frankia taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
PPOX class F420-dependent enzyme
13_1_40cm_4_scaffold_3759_25
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

17700..18047
DNA (348bp) protein (116aa)
MutT/nudix family protein Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
MutT/nudix family protein id=4388224 bin=GWA2_Methylomirabilis_73_35 species=Frankia alni genus=Frankia taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
NUDIX hydrolase
13_1_40cm_4_scaffold_3759_26
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

18158..18442
DNA (285bp) protein (95aa)
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
Peroxiredoxin id=4388219 bin=GWA2_Methylomirabilis_73_35 species=Ilumatobacter coccineus genus=Ilumatobacter taxon_order=Acidimicrobiales taxon_class=Actinobacteria phylum=Actinobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
redoxin domain-containing protein
13_1_40cm_4_scaffold_3759_27
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

18476..19069
DNA (594bp) protein (198aa)
redoxin domain-containing protein Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
Redoxin domain protein id=3951920 bin=GWF2_Methylomirabilis_70_14 species=Catenulispora acidiphila genus=Catenulispora taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
redoxin domain-containing protein
13_1_40cm_4_scaffold_3759_28
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

Not on your lists

19122..19988
DNA (867bp) protein (289aa)
Short-chain dehydrogenase/reductase SDR id=4887998 bin=GWC2_Methylomirabilis_70_24 species=Sphaerobacter thermophilus genus=Sphaerobacter taxon_order=Sphaerobacterales taxon_class=Thermomicrobia phylum=Chloroflexi tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
short-chain dehydrogenase/reductase SDR Tax=GWA2_Rokubacteria_70_23_curated
short-chain dehydrogenase/reductase SDR
13_1_40cm_4_scaffold_3759_29
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

Not on your lists

19985..20467
DNA (483bp) protein (161aa)
protein tyrosine phosphatase; K01104 protein-tyrosine phosphatase [EC:3.1.3.48] Tax=GWA2_Rokubacteria_70_23_curated
Protein tyrosine phosphatase id=4887997 bin=GWC2_Methylomirabilis_70_24 species=Desulfotomaculum reducens genus=Desulfotomaculum taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
protein tyrosine phosphatase
13_1_40cm_4_scaffold_3759_30
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

20524..23406
DNA (2883bp) protein (961aa)
Two-component hybrid sensor and regulator n=1 Tax=Bradyrhizobium diazoefficiens (strain JCM 10833 / IAM 13628 / NBRC 14792 / USDA 110) RepID=Q89RB0_BRADU
two-component hybrid sensor and regulator Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
two-component hybrid sensor and regulator
Displaying items 1-30 of 33 in total

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