ggKbase home page

13_1_40cm_4_scaffold_3813

Search features with annotation key words

Displaying items 1-30 of 36 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_40cm_4_scaffold_3813_1
unknown

Not on your lists

217..483
DNA (267bp) protein (89aa)

This feature has no annotations

13_1_40cm_4_scaffold_3813_2
unknown

Not on your lists

comp(707..1027)
DNA (321bp) protein (107aa)

This feature has no annotations

13_1_40cm_4_scaffold_3813_3
R_Rokubacteria_68_19, Rokubacteria, Bacteria

Not on your lists

2164..2691
DNA (528bp) protein (176aa)
Uncharacterized protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_68_19_curated
13_1_40cm_4_scaffold_3813_4
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(2571..3326)
DNA (756bp) protein (252aa)
Branched-chain amino acid ABC transporter ATP-binding protein id=5022300 bin=GWA2_Methylomirabilis_73_35 species=Haloferax denitrificans genus=Haloferax taxon_order=Halobacteriales taxon_class=Halobacteria phylum=Euryarchaeota tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
livG3; branched-chain amino acid ABC transporter ATP-binding protein; K01995 branched-chain amino acid transport system ATP-binding protein Tax=GWA2_Rokubacteria_73_35_curated
livG-3; branched-chain amino acid ABC transporter ATP-binding protein
13_1_40cm_4_scaffold_3813_5
R_NC10_66_22, NC10, Bacteria

Not on your lists

comp(3329..4327)
DNA (999bp) protein (333aa)
Inner-membrane translocator id=5022301 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=unknown taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
branched-chain amino acid ABC transporter permease; K01998 branched-chain amino acid transport system permease protein Tax=RIFCSPLOWO2_02_FULL_NC10_66_22_curated
branched-chain amino acid ABC transporter permease
13_1_40cm_4_scaffold_3813_6
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(4347..5222)
DNA (876bp) protein (292aa)
Inner-membrane translocator id=5022302 bin=GWA2_Methylomirabilis_73_35 species=Thermus sp. CCB_US3_UF1 genus=Thermus taxon_order=Thermales taxon_class=Deinococci phylum=Deinococcus-Thermus tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
ABC transporter permease; K01997 branched-chain amino acid transport system permease protein Tax=GWA2_Rokubacteria_73_35_curated
inner-membrane translocator
13_1_40cm_4_scaffold_3813_7
R_Rokubacteria_68_19, Rokubacteria, Bacteria

Not on your lists

comp(5237..5644)
DNA (408bp) protein (136aa)
Putative uncharacterized protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_68_19_curated
Putative uncharacterized protein id=14625570 bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Bacillariophyta tax=bin7_NC10_sister organism_group=NC10
13_1_40cm_4_scaffold_3813_8
R_NC10_66_22, NC10, Bacteria

Not on your lists

comp(5660..7432)
DNA (1773bp) protein (591aa)
solute binding protein Tax=RIFCSPLOWO2_02_FULL_NC10_66_22_curated
Putative uncharacterized protein id=14625570 bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Bacillariophyta tax=bin7_NC10_sister organism_group=NC10
13_1_40cm_4_scaffold_3813_9
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(7554..8921)
DNA (1368bp) protein (456aa)
Extracellular ligand-binding receptor id=5022303 bin=GWA2_Methylomirabilis_73_35 species=Haloferax denitrificans genus=Haloferax taxon_order=Halobacteriales taxon_class=Halobacteria phylum=Euryarchaeota tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
branched chain amino acid ABC transporter substrate-binding protein Tax=GWA2_Rokubacteria_73_35_curated
branched chain amino acid ABC transporter substrate-binding protein
13_1_40cm_4_scaffold_3813_10
R_NC10_66_22, NC10, Bacteria

Not on your lists

9075..9791
DNA (717bp) protein (239aa)
id=14625572 Tax=RIFCSPLOWO2_02_FULL_NC10_66_22_curated
id=14625572 bin=bin7_NC10_sister tax=bin7_NC10_sister organism_group=NC10
13_1_40cm_4_scaffold_3813_11
unknown

Not on your lists

comp(9745..9861)
DNA (117bp) protein (39aa)

This feature has no annotations

13_1_40cm_4_scaffold_3813_12
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

10059..10562
DNA (504bp) protein (168aa)
Polysaccharide deacetylase id=3955121 bin=GWA2_Methylomirabilis_73_35 species=Desulfotomaculum kuznetsovii genus=Desulfotomaculum taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
polysaccharide deacetylase Tax=GWA2_Rokubacteria_73_35_curated
polysaccharide deacetylase
13_1_40cm_4_scaffold_3813_13
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(10563..10934)
DNA (372bp) protein (124aa)
hypothetical protein Tax=GWA2_Rokubacteria_73_35_curated
Membrane protein, putative id=3955119 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein
13_1_40cm_4_scaffold_3813_14
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(10934..11359)
DNA (426bp) protein (142aa)
id=3870377 Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
id=2980061 bin=GWC2_Methylomirabilis_70_16 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
13_1_40cm_4_scaffold_3813_15
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(11356..11733)
DNA (378bp) protein (126aa)
id=3870377 Tax=GWA2_Rokubacteria_73_35_curated
id=3870377 bin=GWF2_Methylomirabilis_70_14 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_40cm_4_scaffold_3813_16
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(12428..13594)
DNA (1167bp) protein (389aa)
ABC transporter permease; K02004 putative ABC transport system permease protein Tax=GWA2_Rokubacteria_73_35_curated
Putative ABC transporter permease protein id=3955116 bin=GWA2_Methylomirabilis_73_35 species=ACD58_39_12 genus=ACD58_39_12 taxon_order=ACD58_39_12 taxon_class=ACD58_39_12 phylum=ACD58 tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
ABC transporter permease
13_1_40cm_4_scaffold_3813_17
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(13715..16024)
DNA (2310bp) protein (770aa)
monooxygenase FAD-binding protein Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
Flavin-dependent dehydrogenase id=2980067 bin=GWC2_Methylomirabilis_70_16 species=Xanthomonas gardneri genus=Xanthomonas taxon_order=Xanthomonadales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
monooxygenase FAD-binding protein
13_1_40cm_4_scaffold_3813_18
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(16021..17037)
DNA (1017bp) protein (339aa)
beta-ketoacyl-acyl-carrier-protein synthase II (EC:2.3.1.179); K09458 3-oxoacyl-[acyl-carrier-protein] synthase II [EC:2.3.1.179] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Beta-ketoacyl synthase id=3870372 bin=GWF2_Methylomirabilis_70_14 species=Thermomonospora curvata genus=Thermomonospora taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
AuaD protein
13_1_40cm_4_scaffold_3813_19
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

Not on your lists

comp(17034..18212)
DNA (1179bp) protein (393aa)
Beta-ketoacyl synthase; K09458 3-oxoacyl-[acyl-carrier-protein] synthase II [EC:2.3.1.179] Tax=GWA2_Rokubacteria_70_23_curated
fabF; 3-oxoacyl-ACP synthase (EC:2.3.1.41)
Beta-ketoacyl synthase id=3713926 bin=GWC2_Methylomirabilis_70_16 species=Geobacter lovleyi genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
13_1_40cm_4_scaffold_3813_20
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(18209..18484)
DNA (276bp) protein (92aa)
hypothetical protein; K02078 acyl carrier protein Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
hypothetical protein; K02078 acyl carrier protein id=14627962 bin=bin7_NC10_sister species=Sorangium cellulosum genus=Sorangium taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=bin7_NC10_sister organism_group=NC10
13_1_40cm_4_scaffold_3813_21
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(18492..20435)
DNA (1944bp) protein (648aa)
Beta-ketoacyl synthase; K09458 3-oxoacyl-[acyl-carrier-protein] synthase II [EC:2.3.1.179] Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
3-oxoacyl-[acyl-carrier-protein] synthase 2 id=3713931 bin=GWC2_Methylomirabilis_70_16 species=Thermomicrobium roseum genus=Thermomicrobium taxon_order=Thermomicrobiales taxon_class=Thermomicrobia phylum=Chloroflexi tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
hypothetical protein
13_1_40cm_4_scaffold_3813_22
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(20407..20997)
DNA (591bp) protein (197aa)
Lauroyl/myristoyl acyltransferase (EC:2.3.1.-) Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
Lipid A biosynthesis acyltransferase id=4785123 bin=GWC2_Methylomirabilis_70_24 species=Geobacter lovleyi genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
lipid A biosynthesis acyltransferase
13_1_40cm_4_scaffold_3813_23
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(21320..22105)
DNA (786bp) protein (262aa)
Uncharacterized protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Uncharacterized protein id=14627958 bin=bin7_NC10_sister species=Pedosphaera parvula genus=Pedosphaera taxon_order=Verrucomicrobiales taxon_class=Verrucomicrobiae phylum=Verrucomicrobia tax=bin7_NC10_sister organism_group=NC10
13_1_40cm_4_scaffold_3813_24
R_Rokubacteria_69_13, Rokubacteria, Bacteria

Not on your lists

22121..23149
DNA (1029bp) protein (343aa)
dihydroorotate dehydrogenase (EC:1.3.98.1); K00226 dihydroorotate dehydrogenase (fumarate) [EC:1.3.98.1] Tax=RIFCSPHIGHO2_02_FULL_Rokubacteria_69_13_curated
pyrD; Dihydroorotate dehydrogenase (quinone) (EC:1.3.5.2)
Dihydroorotate dehydrogenase (quinone) id=4430352 bin=GWC2_Methylomirabilis_70_24 species=Haliangium ochraceum genus=Haliangium taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
13_1_40cm_4_scaffold_3813_25
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

23553..23795
DNA (243bp) protein (81aa)
id=4430353 Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
id=4430353 bin=GWC2_Methylomirabilis_70_24 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
13_1_40cm_4_scaffold_3813_26
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(23802..24254)
DNA (453bp) protein (151aa)
putative glyoxalase; K07104 Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
putative glyoxalase; K07104 id=14627931 bin=bin7_NC10_sister species=Candidatus Nitrospira defluvii genus=Nitrospira taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=bin7_NC10_sister organism_group=NC10
putative glyoxalase
13_1_40cm_4_scaffold_3813_27
R_Rokubacteria_69_13, Rokubacteria, Bacteria

Not on your lists

comp(24293..24934)
DNA (642bp) protein (214aa)
DNA repair protein RadC; K03630 DNA repair protein RadC Tax=RIFCSPHIGHO2_02_FULL_Rokubacteria_69_13_curated
DNA repair protein RadC; K03630 DNA repair protein RadC id=14627930 bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Bacteroidetes tax=bin7_NC10_sister organism_group=NC10
DNA repair protein RadC
13_1_40cm_4_scaffold_3813_28
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(24968..25429)
DNA (462bp) protein (154aa)
hypothetical protein; K06925 UPF0079 ATP-binding protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Uncharacterized protein family UPF0079, ATPase id=4773673 bin=GWC2_Methylomirabilis_70_16 species=Rhodothermus marinus genus=Rhodothermus taxon_order=Bacteroidetes Order II. Incertae sedis taxon_class=unknown phylum=Bacteroidetes tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
hypothetical protein
13_1_40cm_4_scaffold_3813_29
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(25426..26979)
DNA (1554bp) protein (518aa)
yjeF; carbohydrate kinase Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Putative uncharacterized protein yjeF id=3047191 bin=GWF2_Methylomirabilis_70_14 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
yjeF; carbohydrate kinase
13_1_40cm_4_scaffold_3813_30
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(26982..27734)
DNA (753bp) protein (251aa)
id=4870785 Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
id=4870785 bin=GWC2_Methylomirabilis_70_24 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
Displaying items 1-30 of 36 in total

View Taxonomy