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13_1_40cm_4_scaffold_401

Search features with annotation key words

Displaying 27 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_40cm_4_scaffold_401_1
Mesorhizobium sp. LNHC232B00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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3..200
DNA (198bp) protein (66aa)
UPI0003CF45CF related cluster n=1 Tax=unknown RepID=UPI0003CF45CF
Peroxidase {ECO:0000313|EMBL:ESY65217.1}; TaxID=1287243 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LNHC232B00.;
iron-dependent peroxidase
13_1_40cm_4_scaffold_401_2
Candidatus Nitrososphaera gargensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

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285..821
DNA (537bp) protein (179aa)
Putative universal stress protein n=1 Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0IH54_NITGG
universal stress protein
Putative universal stress protein {ECO:0000313|EMBL:AFU58163.1}; TaxID=1237085 species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Nitro
13_1_40cm_4_scaffold_401_3
unknown

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841..1218
DNA (378bp) protein (126aa)

This feature has no annotations

13_1_40cm_4_scaffold_401_4
RBG_16_Euryarchaeota_41_19_curated, Euryarchaeota, Archaea

Not on your lists

comp(1239..1463)
DNA (225bp) protein (75aa)
Hypothetical membrane protein Tax=RBG_16_Euryarchaeota_41_19_curated
13_1_40cm_4_scaffold_401_5
unknown

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1673..1897
DNA (225bp) protein (75aa)

This feature has no annotations

13_1_40cm_4_scaffold_401_6
unknown

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comp(2390..2554)
DNA (165bp) protein (55aa)

This feature has no annotations

13_1_40cm_4_scaffold_401_7
RBG_16_Archaea_50_20_curated, Archaea

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2726..3880
DNA (1155bp) protein (385aa)
Uncharacterized protein n=1 Tax=Pseudomonas sp. (strain M1) RepID=L1HXK3_PSEUO
Uncharacterized protein Tax=RBG_16_Archaea_50_20_curated
hypothetical protein
13_1_40cm_4_scaffold_401_8
unknown

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4014..4205
DNA (192bp) protein (64aa)

This feature has no annotations

13_1_40cm_4_scaffold_401_9
unknown

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comp(4467..4829)
DNA (363bp) protein (121aa)

This feature has no annotations

13_1_40cm_4_scaffold_401_10
unknown

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5053..5514
DNA (462bp) protein (154aa)

This feature has no annotations

13_1_40cm_4_scaffold_401_11
unknown

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comp(5764..5955)
DNA (192bp) protein (64aa)

This feature has no annotations

13_1_40cm_4_scaffold_401_12
Candidatus Nitrososphaera gargensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

Not on your lists

6650..7384
DNA (735bp) protein (245aa)
Putative transposase, IS605 OrfB family n=1 Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0IFZ7_NITGG
transposase, IS605 OrfB family
Putative transposase, IS605 OrfB family {ECO:0000313|EMBL:AFU60326.1}; TaxID=1237085 species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source=
13_1_40cm_4_scaffold_401_13
unknown

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7527..7796
DNA (270bp) protein (90aa)

This feature has no annotations

13_1_40cm_4_scaffold_401_14
unknown

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7826..8332
DNA (507bp) protein (169aa)

This feature has no annotations

13_1_40cm_4_scaffold_401_15
RBG_16_Archaea_50_20_curated, Archaea

Not on your lists

8359..10419
DNA (2061bp) protein (687aa)
copA; copper-exporting P-type ATPase A (EC:3.6.3.-) Tax=RBG_16_Archaea_50_20_curated
copA; copper-exporting P-type ATPase A (EC:3.6.3.-)
Copper-exporting P-type ATPase A n=1 Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0IJ63_NITGG
13_1_40cm_4_scaffold_401_16
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

Not on your lists


10432..10584
DNA (153bp) protein (51aa)
YHS domain-containing protein id=4578347 bin=GWF2_Methylomirabilis_70_14 species=RBG9 genus=RBG9 taxon_order=RBG9 taxon_class=RBG9 phylum=Chloroflexi tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein Tax=GWA2_Rokubacteria_70_23_curated
50S ribosomal protein L24
13_1_40cm_4_scaffold_401_17
GWF2_CPR3_35_18, CPR3, Bacteria

Not on your lists

10683..11078
DNA (396bp) protein (132aa)
id=1903127 bin=GWE2_CPR3_35_7 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWE2_CPR3_35_7 organism_group=CPR3 organism_desc=Good
Tax=GWF2_CPR3_35_18
13_1_40cm_4_scaffold_401_18
unknown

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comp(11131..11460)
DNA (330bp) protein (110aa)

This feature has no annotations

13_1_40cm_4_scaffold_401_19
RBG_16_Archaea_50_20_curated, Archaea

Not on your lists

comp(11600..12721)
DNA (1122bp) protein (374aa)
zinc metalloprotease Tax=RBG_16_Archaea_50_20_curated
protease id=14631826 bin=bin9_gal15 species=Dehalococcoides mccartyi genus=Dehalococcoides taxon_order=Dehalococcoidales taxon_class=Dehalococcoidia phylum=Chloroflexi tax=bin9_gal15 organism_group=GAL15
Zn-dependent protease
13_1_40cm_4_scaffold_401_20
Methanolacinia petrolearia, Methanolacinia, Methanomicrobiales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

comp(12776..13420)
DNA (645bp) protein (215aa)
Transcriptional regulator, TetR family n=1 Tax=Methanoplanus petrolearius (strain DSM 11571 / OCM 486 / SEBR 4847) RepID=E1RKK4_METP4
TetR family transcriptional regulator
Transcriptional regulator, TetR family {ECO:0000313|EMBL:ADN35857.1}; TaxID=679926 species="Archaea; Euryarchaeota; Methanomicrobia; Methanomicrobiales; Methanomicrobiaceae; Methanolacinia.;" source="
13_1_40cm_4_scaffold_401_21
Ktedonobacter racemifer, Ktedonobacter, Ktedonobacterales, Ktedonobacteria, Chloroflexi, Bacteria

Not on your lists

13514..14425
DNA (912bp) protein (304aa)
sdr-2; glucose/ribitol dehydrogenase family protein (EC:1.1.1.-)
Short-chain dehydrogenase/reductase SDR n=1 Tax=Ktedonobacter racemifer DSM 44963 RepID=D6U7A9_9CHLR
Short-chain dehydrogenase/reductase SDR {ECO:0000313|EMBL:EFH79770.1}; TaxID=485913 species="Bacteria; Chloroflexi; Ktedonobacteria; Ktedonobacterales; Ktedonobacteraceae; Ktedonobacter.;" source="Kte
13_1_40cm_4_scaffold_401_22
Methanobacterium formicicum, Methanobacterium, Methanobacteriales, Methanobacteria, Euryarchaeota, Archaea

Not on your lists

14661..15620
DNA (960bp) protein (320aa)
ABC transporter ATP-binding protein n=1 Tax=Methanobacterium formicicum DSM 3637 RepID=K2R2X9_METFO
ABC transporter ATP-binding protein {ECO:0000313|EMBL:EKF85592.1}; TaxID=1204725 species="Archaea; Euryarchaeota; Methanobacteria; Methanobacteriales; Methanobacteriaceae; Methanobacterium.;" source="
ABC transporter ATP-binding protein
13_1_40cm_4_scaffold_401_23
RBG_13_Bathyarchaeota_46_16b_curated, Bathyarchaeota, Archaea

Not on your lists

15623..16741
DNA (1119bp) protein (373aa)
hypothetical protein n=1 Tax=Methanomassiliicoccus luminyensis RepID=UPI00037C6B38
ABC-2 type transporter; K09686 antibiotic transport system permease protein Tax=RBG_13_Bathyarchaeota_46_16b_curated
ABC-2 type transporter
13_1_40cm_4_scaffold_401_24
R_Deltaproteobacteria_43_33, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16858..18222
DNA (1365bp) protein (455aa)
prpD; 2-methylcitrate dehydratase (EC:4.2.1.79); K01720 2-methylcitrate dehydratase [EC:4.2.1.79] Tax=RIFCSPHIGHO2_02_FULL_Deltaproteobacteria_43_33_curated
prpD; 2-methylcitrate dehydratase (EC:4.2.1.79)
2-methylcitrate dehydratase n=1 Tax=Candidatus Nitrospira defluvii RepID=D8PHT2_9BACT
13_1_40cm_4_scaffold_401_25
GWC2_Deltaproteobacteria_65_14_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18234..19073)
DNA (840bp) protein (280aa)
(2R)-phospho-3-sulfolactate synthase (EC:4.4.-.-)
hypothetical protein n=1 Tax=unclassified Crenarchaeota (miscellaneous) RepID=UPI0003611442
hypothetical protein Tax=GWC2_Deltaproteobacteria_65_14_curated
13_1_40cm_4_scaffold_401_26
unknown

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comp(19214..19492)
DNA (279bp) protein (93aa)

This feature has no annotations

13_1_40cm_4_scaffold_401_27
RBG_16_Euryarchaeota_68_13_curated, Euryarchaeota, Archaea

Not on your lists

19891..20613
DNA (723bp) protein (241aa)
Uncharacterized protein n=1 Tax=Thermoplasmatales archaeon I-plasma RepID=T0LP14_9EURY
hypothetical protein Tax=RBG_16_Euryarchaeota_68_13_curated
hypothetical protein
Displaying 27 items

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