ggKbase home page

13_1_40cm_4_scaffold_3947

Search features with annotation key words

Displaying 26 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_40cm_4_scaffold_3947_1
R_Gemmatimonadetes_71_11, Gemmatimonadetes, Bacteria

Not on your lists

comp(770..1609)
DNA (840bp) protein (280aa)
phosphomethylpyrimidine kinase n=1 Tax=Thermus islandicus RepID=UPI0003B71286
phosphomethylpyrimidine kinase Tax=RIFCSPLOWO2_02_FULL_Gemmatimonadetes_71_11_curated
phosphomethylpyrimidine kinase ThiD
13_1_40cm_4_scaffold_3947_2
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

1772..2461
DNA (690bp) protein (230aa)
tRNA/rRNA methyltransferase (SpoU) n=1 Tax=Desulfotomaculum carboxydivorans (strain DSM 14880 / VKM B-2319 / CO-1-SRB) RepID=F6B408_DESCC
rRNA methyltransferase; K03437 RNA methyltransferase, TrmH family Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
tRNA/rRNA methyltransferase SpoU
13_1_40cm_4_scaffold_3947_3
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

2451..3239
DNA (789bp) protein (263aa)
pilD; leader peptidase/N-methyltransferase (EC:2.1.1.- 3.4.23.43); K02654 leader peptidase (prepilin peptidase) / N-methyltransferase [EC:3.4.23.43 2.1.1.-] Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68
pilD; leader peptidase/N-methyltransferase (EC:2.1.1.- 3.4.23.43)
Type 4 prepilin-like proteins leader peptide-processing enzyme n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1AAY7_GEMAT
13_1_40cm_4_scaffold_3947_4
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

Not on your lists

3245..4423
DNA (1179bp) protein (393aa)
ATPase AAA-2 domain protein n=1 Tax=Thermovibrio ammonificans (strain DSM 15698 / JCM 12110 / HB-1) RepID=E8T2E3_THEA1
AAA ATPase central domain protein
AAA ATPase central domain protein {ECO:0000313|EMBL:AHG91368.1}; TaxID=861299 species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.;"
13_1_40cm_4_scaffold_3947_5
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

4420..5676
DNA (1257bp) protein (419aa)
Uncharacterized protein n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1AAY6_GEMAT
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
hypothetical protein
13_1_40cm_4_scaffold_3947_6
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

Not on your lists


5723..7072
DNA (1350bp) protein (450aa)
Signal recognition particle protein n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1AAY3_GEMAT
ffh; signal recognition particle protein; K03106 signal recognition particle subunit SRP54 Tax=RBG_16_Gemmatimonadetes_66_8_curated
Signal recognition 54 kDa protein
13_1_40cm_4_scaffold_3947_7
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

Not on your lists


7080..7337
DNA (258bp) protein (86aa)
30S ribosomal protein S16 n=1 Tax=Ruminococcus sp. CAG:724 RepID=R5QIA7_9FIRM
30S ribosomal protein S16; K02959 small subunit ribosomal protein S16 Tax=RBG_16_Gemmatimonadetes_66_8_curated
rpsP; 30S ribosomal protein S16
13_1_40cm_4_scaffold_3947_8
unknown

Not on your lists

7382..7606
DNA (225bp) protein (75aa)

This feature has no annotations

13_1_40cm_4_scaffold_3947_9
R_Gemmatimonadetes_71_11, Gemmatimonadetes, Bacteria

Not on your lists

7593..8276
DNA (684bp) protein (228aa)
trmD; tRNA (guanine-N(1)-)-methyltransferase (EC:2.1.1.31); K00554 tRNA (guanine37-N1)-methyltransferase [EC:2.1.1.228] Tax=RIFCSPLOWO2_02_FULL_Gemmatimonadetes_71_11_curated
tRNA (guanine-N(1)-)-methyltransferase n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1AAW8_GEMAT
tRNA (guanine-N(1)-)-methyltransferase
13_1_40cm_4_scaffold_3947_10
R_Gemmatimonadetes_71_11, Gemmatimonadetes, Bacteria

Not on your lists


8320..8700
DNA (381bp) protein (127aa)
50S ribosomal protein L19 n=1 Tax=Kyrpidia tusciae (strain DSM 2912 / NBRC 15312 / T2) RepID=D5WPA9_KYRT2
rplS; 50S ribosomal protein L19; K02884 large subunit ribosomal protein L19 Tax=RIFCSPLOWO2_02_FULL_Gemmatimonadetes_71_11_curated
50S ribosomal protein L19
13_1_40cm_4_scaffold_3947_11
Nitrolancea hollandica, Nitrolancea, Sphaerobacterales, Sphaerobacteridae, Chloroflexi, Bacteria

Not on your lists

8697..9344
DNA (648bp) protein (216aa)
Ribonuclease HII {ECO:0000256|HAMAP-Rule:MF_00052, ECO:0000256|SAAS:SAAS00016879}; Short=RNase HII {ECO:0000256|HAMAP-Rule:MF_00052};; EC=3.1.26.4 {ECO:0000256|HAMAP-Rule:MF_00052, ECO:0000256|SAAS:SA
Ribonuclease H (EC:3.1.26.4)
Ribonuclease HII n=1 Tax=Nitrolancetus hollandicus Lb RepID=I4EGJ7_9CHLR
13_1_40cm_4_scaffold_3947_12
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

Not on your lists

comp(9372..10796)
DNA (1425bp) protein (475aa)
DNA Polymerase X family (EC:2.7.7.7)
DNA polymerase III n=1 Tax=Methylohalobius crimeensis RepID=UPI0003B62325
PHP domain-containing protein; K02347 DNA polymerase (family X) Tax=RBG_16_Gemmatimonadetes_66_8_curated
13_1_40cm_4_scaffold_3947_13
unknown

Not on your lists

10819..11106
DNA (288bp) protein (96aa)

This feature has no annotations

13_1_40cm_4_scaffold_3947_14

Not on your lists

11283..14147
DNA (2865bp) protein (955aa)
TonB-dependent receptor n=1 Tax=bacterium symbiont of Plakortis simplex pPS11G3 RepID=V5JB93_9BACT
TonB-dependent receptor {ECO:0000313|EMBL:AGH13559.1}; TaxID=1256902 species="Bacteria.;" source="bacterium symbiont of Plakortis simplex pPS11G3.;"
hypothetical protein
13_1_40cm_4_scaffold_3947_15

Not on your lists

14095..14358
DNA (264bp) protein (88aa)
TonB-dependent receptor n=1 Tax=bacterium symbiont of Plakortis simplex pPS11G3 RepID=V5JB93_9BACT
TonB-dependent receptor {ECO:0000313|EMBL:AGH13559.1}; TaxID=1256902 species="Bacteria.;" source="bacterium symbiont of Plakortis simplex pPS11G3.;"
hypothetical protein
13_1_40cm_4_scaffold_3947_16
Nitrolancea hollandica, Nitrolancea, Sphaerobacterales, Sphaerobacteridae, Chloroflexi, Bacteria

Not on your lists

comp(14451..15287)
DNA (837bp) protein (279aa)
Uncharacterized protein n=1 Tax=Nitrolancetus hollandicus Lb RepID=I4EJW3_9CHLR
Uncharacterized protein {ECO:0000313|EMBL:CCF84975.1}; TaxID=1129897 species="Bacteria; Chloroflexi; Sphaerobacteridae; Sphaerobacterales; Sphaerobacterineae; Sphaerobacteraceae; Nitrolancea.;" source
hypothetical protein
13_1_40cm_4_scaffold_3947_17
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

Not on your lists

comp(15307..16173)
DNA (867bp) protein (289aa)
hypothetical protein n=1 Tax=Rudaea cellulosilytica RepID=UPI00035D2514
methyltransferase Tax=RBG_16_Gemmatimonadetes_66_8_curated
methyltransferase
13_1_40cm_4_scaffold_3947_18
unknown

Not on your lists

comp(16262..16501)
DNA (240bp) protein (80aa)
ECF subfamily RNA polymerase sigma-24 subunit; K03088 RNA polymerase sigma-70 factor, ECF subfamily
13_1_40cm_4_scaffold_3947_trna_1
unknown

Not on your lists

16655..16727
DNA (73bp)
transferRNA
13_1_40cm_4_scaffold_3947_19
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

comp(16754..17140)
DNA (387bp) protein (129aa)
Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
13_1_40cm_4_scaffold_3947_20
unknown

Not on your lists

17290..17703
DNA (414bp) protein (138aa)

This feature has no annotations

13_1_40cm_4_scaffold_3947_21
GWC2_Gemmatimonadetes_71_10_curated, Gemmatimonadetes, Bacteria

Not on your lists

17711..18574
DNA (864bp) protein (288aa)
branched-chain amino acid aminotransferase (EC:2.6.1.42); K00826 branched-chain amino acid aminotransferase [EC:2.6.1.42] Tax=GWC2_Gemmatimonadetes_71_10_curated
branched-chain amino acid aminotransferase (EC:2.6.1.42)
Branched-chain-amino-acid transaminase n=1 Tax=Anaerobaculum hydrogeniformans ATCC BAA-1850 RepID=D3L4P6_9BACT
13_1_40cm_4_scaffold_3947_22
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

Not on your lists

18646..18888
DNA (243bp) protein (81aa)
Tax=RBG_16_Gemmatimonadetes_66_8_curated
13_1_40cm_4_scaffold_3947_23
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

18885..19292
DNA (408bp) protein (136aa)
Uncharacterized protein n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A9U4_GEMAT
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
hypothetical protein
13_1_40cm_4_scaffold_3947_24
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

19289..20866
DNA (1578bp) protein (526aa)
transglycosylase, slt family; K08307 membrane-bound lytic murein transglycosylase D [EC:3.2.1.-] Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
Putative transglycosylase n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A9U3_GEMAT
putative transglycosylase
13_1_40cm_4_scaffold_3947_25
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

comp(21027..21638)
DNA (612bp) protein (204aa)
Uncharacterized protein n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A9U2_GEMAT
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
Lytic transglycosylase catalytic
Displaying 26 items

View Taxonomy