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13_1_40cm_4_scaffold_3884

Search features with annotation key words

Displaying items 1-30 of 32 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_40cm_4_scaffold_3884_1
unknown

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1..81
DNA (81bp) protein (27aa)

This feature has no annotations

13_1_40cm_4_scaffold_3884_2
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(52..948)
DNA (897bp) protein (299aa)
LysR family transcriptional regulator Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Transcriptional regulator, LysR family id=4930078 bin=GWA2_Methylomirabilis_73_35 species=Azospirillum lipoferum genus=Azospirillum taxon_order=Rhodospirillales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
transcriptional regulator
13_1_40cm_4_scaffold_3884_3
unknown

Not on your lists

comp(1142..1510)
DNA (369bp) protein (123aa)

This feature has no annotations

13_1_40cm_4_scaffold_3884_4
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

Not on your lists

1743..2903
DNA (1161bp) protein (387aa)
rocD; Ornithine aminotransferase; K00821 acetylornithine/N-succinyldiaminopimelate aminotransferase [EC:2.6.1.11 2.6.1.17] Tax=GWA2_Rokubacteria_70_23_curated
Acetylornithine aminotransferase id=4400740 bin=GWF2_Methylomirabilis_70_14 species=alpha proteobacterium BAL199 genus=unknown taxon_order=unknown taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
rocD; Ornithine aminotransferase
13_1_40cm_4_scaffold_3884_5
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(2900..3826)
DNA (927bp) protein (309aa)
DNA ligase D; K01971 DNA ligase (ATP) [EC:6.5.1.1] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
DNA ligase D; K01971 DNA ligase (ATP) [EC:6.5.1.1] id=14626956 bin=bin7_NC10_sister species=unknown genus=Anaeromyxobacter taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=bin7_NC10_sister organism_group=NC10
DNA ligase D
13_1_40cm_4_scaffold_3884_6
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(3819..5585)
DNA (1767bp) protein (589aa)
DNA ligase D; K01971 DNA ligase (ATP) [EC:6.5.1.1] Tax=GWA2_Rokubacteria_73_35_curated
DNA ligase D id=4930074 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=Anaeromyxobacter taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
DNA ligase D
13_1_40cm_4_scaffold_3884_7
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(5578..7044)
DNA (1467bp) protein (489aa)
Uncharacterized protein n=1 Tax=Candidatus Nitrospira defluvii RepID=D8PCF9_9BACT
hypothetical protein; K07052 Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
hypothetical protein
13_1_40cm_4_scaffold_3884_8
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

7072..7935
DNA (864bp) protein (288aa)
Probable DNA repair protein Anae109_0938 id=4930072 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=Anaeromyxobacter taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
Ku family containing protein; K10979 DNA end-binding protein Ku Tax=GWA2_Rokubacteria_73_35_curated
Ku family containing protein
13_1_40cm_4_scaffold_3884_9
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

7976..9118
DNA (1143bp) protein (381aa)
pyruvate dehydrogenase; K00161 pyruvate dehydrogenase E1 component subunit alpha [EC:1.2.4.1] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Pyruvate dehydrogenase (Acetyl-transferring) id=4930070 bin=GWA2_Methylomirabilis_73_35 species=Syntrophobacter fumaroxidans genus=Syntrophobacter taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
pyruvate dehydrogenase
13_1_40cm_4_scaffold_3884_10
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

9412..10056
DNA (645bp) protein (215aa)
transketolase, central region; K00162 pyruvate dehydrogenase E1 component subunit beta [EC:1.2.4.1] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Pyruvate dehydrogenase E1 component subunit beta id=4930068 bin=GWA2_Methylomirabilis_73_35 species=delta proteobacterium NaphS2 genus=unknown taxon_order=unknown taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
transketolase, central region
13_1_40cm_4_scaffold_3884_11
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

Not on your lists

10102..10431
DNA (330bp) protein (110aa)
hypothetical protein; K00627 pyruvate dehydrogenase E2 component (dihydrolipoamide acetyltransferase) [EC:2.3.1.12] Tax=GWA2_Rokubacteria_70_23_curated
Pyruvate dehydrogenase E2 component (Dihydrolipoamide acetyltransferase) id=4005294 bin=GWC2_Methylomirabilis_70_24 species=Natronomonas moolapensis genus=Natronomonas taxon_order=Halobacteriales taxon_class=Halobacteria phylum=Euryarchaeota tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
bkdF; branched-chain alpha-keto acid dehydrogenase subunit E2
13_1_40cm_4_scaffold_3884_12
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

10428..11549
DNA (1122bp) protein (374aa)
dehydrogenase catalytic domain-containing protein; K00627 pyruvate dehydrogenase E2 component (dihydrolipoamide acetyltransferase) [EC:2.3.1.12] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Putative Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex id=4930066 bin=GWA2_Methylomirabilis_73_35 species=delta proteobacterium NaphS2 genus=unknown taxon_order=unknown taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
dehydrogenase catalytic domain-containing protein
13_1_40cm_4_scaffold_3884_13
CSP1_6_Rokubacteria, Rokubacteria, Bacteria

Not on your lists

11557..12543
DNA (987bp) protein (329aa)
hypothetical protein; K01989 putative ABC transport system substrate-binding protein id=14627983 bin=bin7_NC10_sister species=Bradyrhizobium japonicum genus=Bradyrhizobium taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=bin7_NC10_sister organism_group=NC10
hypothetical protein; K01989 putative ABC transport system substrate-binding protein Tax=CSP1_6_Rokubacteria
hypothetical protein
13_1_40cm_4_scaffold_3884_14
RBG_16_Acidobacteria_64_8_curated, Acidobacteria, Bacteria

Not on your lists

12557..13360
DNA (804bp) protein (268aa)
Uncharacterized protein n=1 Tax=Actinomadura madurae LIID-AJ290 RepID=U2NGU5_9ACTO
type 11 methyltransferase Tax=RBG_16_Acidobacteria_64_8_curated
methyltransferase
13_1_40cm_4_scaffold_3884_15
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

13382..14770
DNA (1389bp) protein (463aa)
dihydrolipoamide dehydrogenase; K00382 dihydrolipoamide dehydrogenase [EC:1.8.1.4] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Dihydrolipoyl dehydrogenase id=4930064 bin=GWA2_Methylomirabilis_73_35 species=Nitrosococcus halophilus genus=Nitrosococcus taxon_order=Chromatiales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
dihydrolipoamide dehydrogenase
13_1_40cm_4_scaffold_3884_16
Azospirillum thiophilum, Azospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14777..15100)
DNA (324bp) protein (108aa)
3',5'-cyclic adenosine monophosphate phosphodiesterase CpdA n=1 Tax=Azospirillum sp. (strain B510) RepID=D3P0Y7_AZOS1
metallophosphoesterase
3',5'-cyclic adenosine monophosphate phosphodiesterase CpdA {ECO:0000256|HAMAP-Rule:MF_00905}; Short=3',5'-cyclic AMP phosphodiesterase {ECO:0000256|HAMAP-Rule:MF_00905};; Short=cAMP phosphodiesterase
13_1_40cm_4_scaffold_3884_17
RLO_Rhodospirillales_67_15, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15115..15558)
DNA (444bp) protein (148aa)
3',5'-cyclic adenosine monophosphate phosphodiesterase CpdA n=1 Tax=Azospirillum sp. (strain B510) RepID=D3P0Y7_AZOS1
putative metallophosphodiesterase Tax=RIFCSPLOWO2_12_FULL_Rhodospirillales_67_15_curated
metallophosphoesterase
13_1_40cm_4_scaffold_3884_18
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

15609..16772
DNA (1164bp) protein (388aa)
Major facilitator superfamily MFS_1 transporter id=4930061 bin=GWA2_Methylomirabilis_73_35 species=Sporosarcina newyorkensis genus=Sporosarcina taxon_order=Bacillales taxon_class=Bacilli phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
major facilitator superfamily protein Tax=GWA2_Rokubacteria_73_35_curated
major facilitator superfamily protein
13_1_40cm_4_scaffold_3884_19
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

16811..17455
DNA (645bp) protein (215aa)
pyrrolidone-carboxylate peptidase (EC:3.4.19.3); K01304 pyroglutamyl-peptidase [EC:3.4.19.3] Tax=GWA2_Rokubacteria_73_35_curated
pyrrolidone-carboxylate peptidase (EC:3.4.19.3)
Pyrrolidone-carboxylate peptidase id=4930056 bin=GWA2_Methylomirabilis_73_35 species=Pyrococcus furiosus genus=Pyrococcus taxon_order=Thermococcales taxon_class=Thermococci phylum=Euryarchaeota tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_40cm_4_scaffold_3884_20
R_NC10_66_22, NC10, Bacteria

Not on your lists

17433..17792
DNA (360bp) protein (120aa)
Uncharacterized protein n=1 Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0IP06_NITGG
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_NC10_66_22_curated
hypothetical protein
13_1_40cm_4_scaffold_3884_21
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

17789..18496
DNA (708bp) protein (236aa)
phosphoglycolate phosphatase (EC:3.1.3.18); K07025 putative hydrolase of the HAD superfamily Tax=GWA2_Rokubacteria_73_35_curated
Putative Phosphoglycolate phosphatase id=4930053 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=Bradyrhizobium taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
putative hydrolase
13_1_40cm_4_scaffold_3884_22
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

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comp(18506..18649)
DNA (144bp) protein (48aa)
Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
13_1_40cm_4_scaffold_3884_23
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

Not on your lists

19074..20369
DNA (1296bp) protein (432aa)
UDP-N-acetylglucosamine 1-carboxyvinyltransferase {ECO:0000256|HAMAP-Rule:MF_00111, ECO:0000256|SAAS:SAAS00085344}; EC=2.5.1.7 {ECO:0000256|HAMAP-Rule:MF_00111, ECO:0000256|SAAS:SAAS00085344};; Enoylp
UDP-N-acetylglucosamine 1-carboxyvinyltransferase n=1 Tax=Leptospira weilii serovar Ranarum str. ICFT RepID=N1WI19_9LEPT
UDP-N-acetylglucosamine 1-carboxyvinyltransferase
13_1_40cm_4_scaffold_3884_24
Burkholderiales bacterium JOSHI_001, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20398..21720
DNA (1323bp) protein (441aa)
56kDa selenium binding protein (SBP56) n=1 Tax=Burkholderiales bacterium JOSHI_001 RepID=H5WT91_9BURK
56kDa selenium binding protein (SBP56) {ECO:0000313|EMBL:EHR68964.1}; Flags: Precursor;; TaxID=864051 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales.;" source="Burkholderiales
Selenium-binding protein, putative
13_1_40cm_4_scaffold_3884_25
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

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21689..22432
DNA (744bp) protein (248aa)
SCO1/SenC family protein/methylamine utilization protein MauG Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
SCO1/SenC family protein/methylamine utilization protein MauG id=12498377 bin=THIO_MID species=Methylobacter marinus genus=Methylobacter taxon_order=Methylococcales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=THIO_MID organism_group=Betaproteobacteria
SCO1/SenC family protein/methylamine utilization protein MauG
13_1_40cm_4_scaffold_3884_26
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

22429..23289
DNA (861bp) protein (287aa)
rhodanese domain-containing protein; K01011 thiosulfate/3-mercaptopyruvate sulfurtransferase [EC:2.8.1.1 2.8.1.2] Tax=GWA2_Rokubacteria_73_35_curated
Sulfurtransferase id=2213480 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=Caulobacter taxon_order=Caulobacterales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
rhodanese domain-containing protein
13_1_40cm_4_scaffold_3884_27
Streptomyces sp. Tu6071, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(23232..24116)
DNA (885bp) protein (295aa)
Putative cytochrome P-450 hydroxylase n=1 Tax=Streptomyces sp. Tu6071 RepID=F3Z7V2_9ACTO
Putative cytochrome P-450 hydroxylase {ECO:0000313|EMBL:EGJ73539.1}; TaxID=355249 species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces sp. Tu607
13_1_40cm_4_scaffold_3884_28
Streptomyces sp. CNQ-509, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

24169..24429
DNA (261bp) protein (87aa)
cytochrome P450 n=1 Tax=Streptomyces RepID=UPI000378F937
cytochrome P450
Cytochrome P450 {ECO:0000313|EMBL:AKH82795.1}; TaxID=444103 species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces sp. CNQ-509.;"
13_1_40cm_4_scaffold_3884_29
Mycobacterium kansasii, Mycobacterium, Corynebacteriales, Actinobacteria, Actinobacteria, Bacteria

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24449..24868
DNA (420bp) protein (140aa)
Pyridoxamine 5'-phosphate oxidase n=1 Tax=Mycobacterium kansasii ATCC 12478 RepID=U5WZP0_MYCKA
pyridoxamine 5'-phosphate oxidase
Pyridoxamine 5'-phosphate oxidase {ECO:0000313|EMBL:AGZ54584.1}; TaxID=557599 species="Bacteria; Actinobacteria; Corynebacteriales; Mycobacteriaceae; Mycobacterium.;" source="Mycobacterium kansasii AT
13_1_40cm_4_scaffold_3884_30
Mastigocladus laminosus, Mastigocladus, Stigonematales, Cyanobacteria, Bacteria

Not on your lists

comp(24885..25577)
DNA (693bp) protein (231aa)
hypothetical protein n=1 Tax=Chlorogloeopsis RepID=UPI0003190A51
Uncharacterized protein {ECO:0000313|EMBL:KIY13339.1}; TaxID=1594576 species="Bacteria; Cyanobacteria; Stigonematales; Mastigocladus.;" source="Mastigocladus laminosus UU774.;"
hypothetical protein
Displaying items 1-30 of 32 in total

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