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13_1_40cm_4_scaffold_4049

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Displaying 26 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_40cm_4_scaffold_4049_trna_1
unknown

Not on your lists

104..187
DNA (84bp)
transferRNA
13_1_40cm_4_scaffold_4049_1
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

comp(209..1351)
DNA (1143bp) protein (381aa)
Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 2 n=1 Tax=Chloracidobacterium thermophilum (strain B) RepID=G2LK99_CHLTF id=5224911 bin=16ft_combo_ws3_JS1 species=Candidatus Chloracidobacterium thermophilum genus=Candidatus Chloracidobacterium taxon_order=unknown taxon_class=unknown phylum=Acidobacteria tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 2 Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
UBA/THIF-type NAD/FAD binding domain-containing protein
13_1_40cm_4_scaffold_4049_2
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

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comp(1348..1800)
DNA (453bp) protein (151aa)
Rrf2 family DNA-binding protein n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A4K0_GEMAT
transcriptional regulator, Rrf2 family
Transcriptional regulator, Rrf2 family {ECO:0000313|EMBL:AHG91123.1}; TaxID=861299 species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.;"
13_1_40cm_4_scaffold_4049_3
unknown

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comp(1832..2863)
DNA (1032bp) protein (344aa)

This feature has no annotations

13_1_40cm_4_scaffold_4049_4
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

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comp(2909..3325)
DNA (417bp) protein (139aa)
Tax=RBG_16_Gemmatimonadetes_66_8_curated
13_1_40cm_4_scaffold_4049_5
GWC2_Gemmatimonadetes_71_10_curated, Gemmatimonadetes, Bacteria

Not on your lists

comp(3348..4763)
DNA (1416bp) protein (472aa)
aspA; aspartate ammonia-lyase (EC:4.3.1.1); K01744 aspartate ammonia-lyase [EC:4.3.1.1] Tax=GWC2_Gemmatimonadetes_71_10_curated
aspA; aspartate ammonia-lyase (EC:4.3.1.1)
Aspartate ammonia-lyase n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A4K1_GEMAT
13_1_40cm_4_scaffold_4049_6
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

Not on your lists

comp(4829..5503)
DNA (675bp) protein (225aa)
Lysylphosphatidylglycerol synthetase/glycosyltransferase AglD Tax=RBG_16_Gemmatimonadetes_66_8_curated
13_1_40cm_4_scaffold_4049_7
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

comp(5746..6387)
DNA (642bp) protein (214aa)
hypothetical protein n=1 Tax=Streptomyces somaliensis RepID=UPI00029AF7BB
beta-lactamase-like protein Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
beta-lactamase domain protein
13_1_40cm_4_scaffold_4049_8
GWC2_Gemmatimonadetes_71_10_curated, Gemmatimonadetes, Bacteria

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comp(6384..7349)
DNA (966bp) protein (322aa)
trxB1; thioredoxin-disulfide reductase (EC:1.8.1.9); K00384 thioredoxin reductase (NADPH) [EC:1.8.1.9] Tax=GWC2_Gemmatimonadetes_71_10_curated
thioredoxin reductase n=1 Tax=Sporolactobacillus vineae RepID=UPI000287D224
TrxB; thioredoxin reductase
13_1_40cm_4_scaffold_4049_9
Gemmatimonas aurantiaca, Gemmatimonas, Gemmatimonadales, Gemmatimonadetes, Gemmatimonadetes, Bacteria

Not on your lists

comp(7342..8151)
DNA (810bp) protein (270aa)
Uncharacterized protein n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A4K5_GEMAT
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:BAH39030.1}; TaxID=379066 species="Bacteria; Gemmatimonadetes; Gemmatimonadales; Gemmatimonadaceae; Gemmatimonas.;" source="Gemmatimonas aurantiaca (strain T-
13_1_40cm_4_scaffold_4049_10
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

Not on your lists

comp(8424..9155)
DNA (732bp) protein (244aa)
short-chain dehydrogenase/reductase SDR
Short-chain dehydrogenase/reductase SDR {ECO:0000313|EMBL:AHG91128.1}; TaxID=861299 species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.;"
Short-chain dehydrogenase/reductase SDR id=4165955 bin=GWF2_Methylomirabilis_70_14 species=unknown genus=Roseiflexus taxon_order=Chloroflexales taxon_class=Chloroflexi phylum=Chloroflexi tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_40cm_4_scaffold_4049_11
R_Gemmatimonadetes_71_11, Gemmatimonadetes, Bacteria

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comp(9155..9877)
DNA (723bp) protein (241aa)
Short-chain dehydrogenase/reductase n=1 Tax=uncultured gamma proteobacterium RepID=H5SE57_9GAMM
fabG10; 3-oxoacyl-ACP reductase Tax=RIFCSPLOWO2_02_FULL_Gemmatimonadetes_71_11_curated
short-chain dehydrogenase/reductase SDR
13_1_40cm_4_scaffold_4049_12
R_Gemmatimonadetes_71_11, Gemmatimonadetes, Bacteria

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comp(9867..10130)
DNA (264bp) protein (88aa)
peroxiredoxin (EC:1.11.1.15); K03564 peroxiredoxin Q/BCP [EC:1.11.1.15] Tax=RIFCSPLOWO2_02_FULL_Gemmatimonadetes_71_11_curated
Peroxiredoxin n=1 Tax=Leptospirillum ferrooxidans (strain C2-3) RepID=I0ILK4_LEPFC
peroxiredoxin
13_1_40cm_4_scaffold_4049_13
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

comp(10161..10304)
DNA (144bp) protein (48aa)
Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
13_1_40cm_4_scaffold_4049_14
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

Not on your lists

comp(10297..11091)
DNA (795bp) protein (265aa)
Uncharacterized protein n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A4K7_GEMAT
hypothetical protein; K07053 Tax=RBG_16_Gemmatimonadetes_66_8_curated
PHP domain protein
13_1_40cm_4_scaffold_4049_15
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

comp(11141..11410)
DNA (270bp) protein (90aa)
Uncharacterized protein n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A956_GEMAT
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
hypothetical protein
13_1_40cm_4_scaffold_4049_16
RBG_16_Actinobacteria_67_10_curated, Acidimicrobiia, Actinobacteria, Bacteria

Not on your lists

comp(11417..11731)
DNA (315bp) protein (105aa)
Tax=RBG_16_Actinobacteria_67_10_curated
13_1_40cm_4_scaffold_4049_17
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

comp(11734..13038)
DNA (1305bp) protein (435aa)
dihydrolipoamide acyltransferase (EC:2.3.1.-); K00658 2-oxoglutarate dehydrogenase E2 component (dihydrolipoamide succinyltransferase) [EC:2.3.1.61] Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curat
Dihydrolipoamide acyltransferase n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A958_GEMAT
2-oxoglutarate dehydrogenase, E2 component, dihydrolipoamide succinyltransferase
13_1_40cm_4_scaffold_4049_18
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

Not on your lists

comp(13069..14055)
DNA (987bp) protein (329aa)
branched-chain alpha-keto acid dehydrogenase E1 component (EC:1.2.4.1); K00167 2-oxoisovalerate dehydrogenase E1 component, beta subunit [EC:1.2.4.4] Tax=RBG_16_Gemmatimonadetes_66_8_curated
Branched-chain alpha-keto acid dehydrogenase E1 component n=1 Tax=Solibacter usitatus (strain Ellin6076) RepID=Q02C51_SOLUE
Transketolase central region
13_1_40cm_4_scaffold_4049_19
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

comp(14055..15116)
DNA (1062bp) protein (354aa)
pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type subunit alpha (EC:1.2.4.1); K00166 2-oxoisovalerate dehydrogenase E1 component, alpha subunit [EC:1.2.4.4]
Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, alpha subunit n=1 Tax=Chloracidobacterium thermophilum (strain B) RepID=G2LHD8_CHLTF
dehydrogenase E1 component
13_1_40cm_4_scaffold_4049_20
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

15148..15363
DNA (216bp) protein (72aa)
Conserved domain protein n=4 Tax=Listeria innocua RepID=E3Z0C8_LISIO
putative mercuric ion binding protein; K07213 copper chaperone Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
hypothetical protein
13_1_40cm_4_scaffold_4049_21
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

Not on your lists

comp(15360..15650)
DNA (291bp) protein (97aa)
Uncharacterized protein n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A960_GEMAT
hypothetical protein
Tax=RBG_16_Gemmatimonadetes_66_8_curated
13_1_40cm_4_scaffold_4049_22
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

Not on your lists

comp(15628..16440)
DNA (813bp) protein (271aa)
cation-transporting ATPase; K01533 Cu2+-exporting ATPase [EC:3.6.3.4] Tax=RBG_16_Gemmatimonadetes_66_8_curated
actP; copper-transporting P-type ATPase (EC:3.6.3.4) id=14429289 bin=bin3_NC10 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin3_NC10 organism_group=NC10
actP; copper-transporting P-type ATPase (EC:3.6.3.4)
13_1_40cm_4_scaffold_4049_23
unknown

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17179..18348
DNA (1170bp) protein (390aa)

This feature has no annotations

13_1_40cm_4_scaffold_4049_24
Pyrinomonas methylaliphatogenes, Pyrinomonas, Acidobacteria, Bacteria

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comp(18189..18629)
DNA (441bp) protein (147aa)
hypothetical protein n=1 Tax=Hymenobacter aerophilus RepID=UPI00037D8AF9
Cupredoxin-like domain {ECO:0000313|EMBL:CDM64284.1}; TaxID=454194 species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Pyrinomonas.;" source="Pyrinomonas methylaliphatogenes.;"
copper-exporting ATPase
13_1_40cm_4_scaffold_4049_25
unknown

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comp(18640..18783)
DNA (144bp) protein (48aa)

This feature has no annotations

Displaying 26 items

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