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13_1_40cm_4_scaffold_410

Search features with annotation key words

Displaying 28 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_40cm_4_scaffold_410_1
R_Rokubacteria_68_19, Rokubacteria, Bacteria

Not on your lists

1..243
DNA (243bp) protein (81aa)
periplasmic binding protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_68_19_curated
Periplasmic binding protein id=4426895 bin=GWC2_Methylomirabilis_70_16 species=Rubrobacter xylanophilus genus=Rubrobacter taxon_order=Rubrobacterales taxon_class=Actinobacteria phylum=Actinobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
ABC-type hemin transport system periplasmic component
13_1_40cm_4_scaffold_410_2
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(230..379)
DNA (150bp) protein (50aa)
hypothetical protein id=4379973 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
13_1_40cm_4_scaffold_410_3
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(394..855)
DNA (462bp) protein (154aa)
transcription regulator Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
Endoribonuclease L-PSP id=4379943 bin=GWA2_Methylomirabilis_73_35 species=Flavobacteria bacterium MS024-2A genus=unknown taxon_order=unknown taxon_class=Flavobacteriia phylum=Bacteroidetes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
endoribonuclease L-PSP
13_1_40cm_4_scaffold_410_4
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

900..1625
DNA (726bp) protein (242aa)
NUDIX hydrolase Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
NTP pyrophosphohydrolases including oxidative damage repair enzymes id=4379942 bin=GWA2_Methylomirabilis_73_35 species=uncultured gamma proteobacterium HF4000_19M20 genus=unknown taxon_order=unknown taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
NUDIX hydrolase
13_1_40cm_4_scaffold_410_5
Pseudomonas viridiflava, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1688..2182)
DNA (495bp) protein (165aa)
Uncharacterized protein n=1 Tax=Pseudomonas sp. GM102 RepID=J3E8P2_9PSED
Strain LMCA8 contig_63, whole genome shotgun sequence {ECO:0000313|EMBL:KIQ27440.1}; TaxID=33069 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.
hypothetical protein
13_1_40cm_4_scaffold_410_6
RIFCSPLOWO2_12_FULL_Betaproteobacteria_65_14_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2179..2529)
DNA (351bp) protein (117aa)
hypothetical protein n=1 Tax=Pseudomonas mandelii RepID=UPI00029A5C28
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_65_14_curated
hypothetical protein
13_1_40cm_4_scaffold_410_7
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(2543..3784)
DNA (1242bp) protein (414aa)
crotonyl-CoA reductase; K14446 crotonyl-CoA carboxylase/reductase [EC:1.3.1.85] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
alcohol dehydrogenase (EC:1.6.5.5)
Crotonyl-CoA reductase id=4426885 bin=GWC2_Methylomirabilis_70_16 species=Candidatus Accumulibacter phosphatis genus=Candidatus Accumulibacter taxon_order=unknown taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
13_1_40cm_4_scaffold_410_8
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(3781..4806)
DNA (1026bp) protein (342aa)
luciferase family protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Luciferase family protein id=3646803 bin=GWC2_Methylomirabilis_70_16 species=unknown genus=Roseiflexus taxon_order=Chloroflexales taxon_class=Chloroflexi phylum=Chloroflexi tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
luciferase family protein
13_1_40cm_4_scaffold_410_9
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists

comp(5008..6126)
DNA (1119bp) protein (373aa)
2-nitropropane dioxygenase; K00459 nitronate monooxygenase [EC:1.13.12.16] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
2-nitropropane dioxygenase NPD n=1 Tax=Paenibacillus sp. (strain JDR-2) RepID=C6D0Y5_PAESJ
2-nitropropane dioxygenase NPD
13_1_40cm_4_scaffold_410_10
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists

comp(6123..6425)
DNA (303bp) protein (101aa)
Long-chain-fatty-acid--CoA ligase (EC:6.2.1.3) Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
AMP-forming acyl-CoA synthetase; K00666 fatty-acyl-CoA synthase [EC:6.2.1.-] id=14627972 bin=bin7_NC10_sister species=Geobacter sulfurreducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=bin7_NC10_sister organism_group=NC10
AMP-binding domain-containing protein
13_1_40cm_4_scaffold_410_11
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(7382..8704)
DNA (1323bp) protein (441aa)
coA-transferase III family protein Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
L-carnitine dehydratase/bile acid-inducible protein F id=4426882 bin=GWC2_Methylomirabilis_70_16 species=Rubrobacter xylanophilus genus=Rubrobacter taxon_order=Rubrobacterales taxon_class=Actinobacteria phylum=Actinobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
coA-transferase III family protein
13_1_40cm_4_scaffold_410_12
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(8701..8859)
DNA (159bp) protein (53aa)
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
13_1_40cm_4_scaffold_410_13
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists

comp(8940..9362)
DNA (423bp) protein (141aa)
hypothetical protein n=1 Tax=Streptomyces scabrisporus RepID=UPI0003670AA4
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
hypothetical protein
13_1_40cm_4_scaffold_410_14
Roseiflexus sp. RS-1, Roseiflexus, Chloroflexales, Chloroflexia, Chloroflexi, Bacteria

Not on your lists

comp(9364..9672)
DNA (309bp) protein (103aa)
Assimilatory nitrite reductase (NAD(P)H) small subunit {ECO:0000313|EMBL:ABQ91575.1}; EC=1.7.1.4 {ECO:0000313|EMBL:ABQ91575.1};; TaxID=357808 species="Bacteria; Chloroflexi; Chloroflexia; Chloroflexal
Rieske (2Fe-2S) domain protein n=2 Tax=Chloroflexus RepID=A9WFK5_CHLAA
Rieske (2Fe-2S) domain-containing protein
13_1_40cm_4_scaffold_410_15
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists

comp(9669..10349)
DNA (681bp) protein (227aa)
TENA/THI-4 family protein n=1 Tax=Aneurinibacillus aneurinilyticus ATCC 12856 RepID=U1Y0Z8_ANEAE
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
hypothetical protein
13_1_40cm_4_scaffold_410_16
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(10481..11539)
DNA (1059bp) protein (353aa)
GAF/GGDEF domain-containing protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
GAF/GGDEF domain-containing protein id=4699804 bin=GWA2_Methylomirabilis_73_35 species=Cystobacter fuscus genus=Cystobacter taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
GAF/GGDEF domain-containing protein
13_1_40cm_4_scaffold_410_17
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(11536..12573)
DNA (1038bp) protein (346aa)
GAF sensor-containing diguanylate cyclase Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Diguanylate cyclase with GAF sensor id=4699803 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=TA06 tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
GAF sensor-containing diguanylate cyclase
13_1_40cm_4_scaffold_410_18
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

12947..14566
DNA (1620bp) protein (540aa)
Predicted protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Predicted protein id=4699805 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=Micromonas taxon_order=Mamiellales taxon_class=Mamiellophyceae phylum=Chlorophyta tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_40cm_4_scaffold_410_19
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(14613..15059)
DNA (447bp) protein (149aa)
ppox class F420-dependent protein Tax=GWA2_Rokubacteria_73_35_curated
Pyridoxamine 5'-phosphate oxidase-related, FMN-binding id=4828262 bin=GWC2_Methylomirabilis_70_16 species=unknown genus=Roseiflexus taxon_order=Chloroflexales taxon_class=Chloroflexi phylum=Chloroflexi tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
ppox class F420-dependent protein
13_1_40cm_4_scaffold_410_20
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

Not on your lists

comp(15056..15892)
DNA (837bp) protein (279aa)
Putative N5,N10-methylenetetrahydromethanopterin reductase-related protein id=4935480 bin=GWC2_Methylomirabilis_70_24 species=marine gamma proteobacterium HTCC2143 genus=unknown taxon_order=unknown taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
oxidoreductase Tax=GWA2_Rokubacteria_70_23_curated
oxidoreductase
13_1_40cm_4_scaffold_410_21
GWC2_Rokubacteria_70_16_curated, Rokubacteria, Bacteria

Not on your lists

comp(15935..16921)
DNA (987bp) protein (329aa)
formamidase (EC:3.5.1.49) Tax=GWC2_Rokubacteria_70_16_curated
Formamidase (EC:3.5.1.49)
Formamidase id=4766431 bin=GWC2_Methylomirabilis_70_16 species=Bacillus selenitireducens genus=Bacillus taxon_order=Bacillales taxon_class=Bacilli phylum=Firmicutes tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
13_1_40cm_4_scaffold_410_22
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

17133..18359
DNA (1227bp) protein (409aa)
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
hypothetical protein id=14626658 bin=bin7_NC10_sister species=Pelobacter carbinolicus genus=Pelobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=bin7_NC10_sister organism_group=NC10
hypothetical protein
13_1_40cm_4_scaffold_410_23
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

18361..20703
DNA (2343bp) protein (781aa)
carbon monoxide dehydrogenase large chain (COdehydrogenase subunit L) (CO-DH L) (EC:1.2.99.2) Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
carbon monoxide dehydrogenase large chain (COdehydrogenase subunit L) (CO-DH L) (EC:1.2.99.2)
Aldehyde oxidase and xanthine dehydrogenase molybdopterin binding protein id=4122809 bin=GWC2_Methylomirabilis_70_16 species=Sphaerobacter thermophilus genus=Sphaerobacter taxon_order=Sphaerobacterales taxon_class=Thermomicrobia phylum=Chloroflexi tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
13_1_40cm_4_scaffold_410_24
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

20714..22336
DNA (1623bp) protein (541aa)
formate-tetrahydrofolate ligase; K01938 formate--tetrahydrofolate ligase [EC:6.3.4.3] Tax=GWA2_Rokubacteria_73_35_curated
fhs; formate--tetrahydrofolate ligase (EC:6.3.4.3)
Formate--tetrahydrofolate ligase n=1 Tax=Thermosinus carboxydivorans Nor1 RepID=A1HML2_9FIRM
13_1_40cm_4_scaffold_410_25
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

22480..22860
DNA (381bp) protein (127aa)
multi-sensor hybrid histidine kinase (EC:2.7.13.3) Tax=GWA2_Rokubacteria_73_35_curated
multi-sensor hybrid histidine kinase (EC:2.7.13.3)
Multi-sensor hybrid histidine kinase id=4699813 bin=GWA2_Methylomirabilis_73_35 species=Beijerinckia indica genus=Beijerinckia taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_40cm_4_scaffold_410_26
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

22857..23492
DNA (636bp) protein (212aa)
Response regulator receiver protein n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4D048_9BACT id=126151 bin=ACD79 species=Chthoniobacter flavus genus=Chthoniobacter taxon_order=unknown taxon_class=Spartobacteria phylum=Verrucomicrobia tax=ACD79 organism_group=Chlamydiae organism_desc=Novel, branching deeply from Chlamydiae
response regulator receiver protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
response regulator receiver protein
13_1_40cm_4_scaffold_410_27
Candidatus Nitrospira defluvii, Nitrospira, Nitrospirales, Nitrospira, Nitrospirae, Bacteria

Not on your lists

comp(23610..24551)
DNA (942bp) protein (314aa)
hypothetical protein n=1 Tax=candidate division NC10 bacterium UW 659-1-D11 RepID=UPI00035D6406
transposase
Transposase {ECO:0000313|EMBL:CBK41563.1}; TaxID=330214 species="Bacteria; Nitrospirae; Nitrospirales; Nitrospiraceae; Nitrospira.;" source="Candidatus Nitrospira defluvii.;"
13_1_40cm_4_scaffold_410_28
unknown

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24919..24981
DNA (63bp) protein (21aa)

This feature has no annotations

Displaying 28 items

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