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13_1_40cm_4_scaffold_428

Search features with annotation key words

Displaying items 1-30 of 36 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_40cm_4_scaffold_428_1
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists

188..976
DNA (789bp) protein (263aa)
enoyl-CoA hydratase Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
Enoyl-CoA hydratase/isomerase id=4534449 bin=GWF2_Methylomirabilis_70_14 species=Mycobacterium tusciae genus=Mycobacterium taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
enoyl-CoA hydratase
13_1_40cm_4_scaffold_428_2
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

988..1584
DNA (597bp) protein (199aa)
group 1 glycosyl transferase Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
Glycosyl transferase, group 1 id=4681940 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=Roseiflexus taxon_order=Chloroflexales taxon_class=Chloroflexi phylum=Chloroflexi tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
group 1 glycosyl transferase
13_1_40cm_4_scaffold_428_3
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

1572..2000
DNA (429bp) protein (143aa)
group 1 glycosyl transferase Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Glycosyl transferase, group 1 id=4534448 bin=GWF2_Methylomirabilis_70_14 species=unknown genus=Roseiflexus taxon_order=Chloroflexales taxon_class=Chloroflexi phylum=Chloroflexi tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
group 1 glycosyl transferase
13_1_40cm_4_scaffold_428_4
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

2734..3138
DNA (405bp) protein (135aa)
pts; 6-pyruvoyl-tetrahydropterin synthase (EC:4.2.3.12); K01737 6-pyruvoyl tetrahydrobiopterin synthase [EC:4.2.3.12] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
6-carboxy-5,6,7,8-tetrahydropterin synthase id=4534446 bin=GWF2_Methylomirabilis_70_14 species=Gracilibacillus halophilus genus=Gracilibacillus taxon_order=Bacillales taxon_class=Bacilli phylum=Firmicutes tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein
13_1_40cm_4_scaffold_428_5
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

3135..3716
DNA (582bp) protein (194aa)
folE; GTP cyclohydrolase I (EC:3.5.4.16) Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
folE; GTP cyclohydrolase I (EC:3.5.4.16) id=14626369 bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin7_NC10_sister organism_group=NC10
GTP cyclohydrolase (EC:3.5.4.16)
13_1_40cm_4_scaffold_428_6
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists

3713..4384
DNA (672bp) protein (224aa)
short chain dehydrogenase Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
GTP cyclohydrolase I id=4681943 bin=GWA2_Methylomirabilis_73_35 species=unidentified genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
short chain dehydrogenase
13_1_40cm_4_scaffold_428_7
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

4425..4751
DNA (327bp) protein (109aa)
Iron-binding protein IscA (Iron-sulfur cluster assembly protein) id=4681944 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
iscA; iron-binding protein IscA (iron-sulfur cluster assembly protein) Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
iscA; iron-binding protein IscA (iron-sulfur cluster assembly protein)
13_1_40cm_4_scaffold_428_8
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

4772..5443
DNA (672bp) protein (224aa)
moaDE; molybdopterin converting factor, subunits 1/2; K03635 molybdopterin synthase catalytic subunit [EC:2.-.-.-] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
molybdopterin converting factor subunit 1; K03635 molybdopterin synthase catalytic subunit [EC:2.-.-.-] id=14626372 bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Acidobacteria tax=bin7_NC10_sister organism_group=NC10
MoaD family protein
13_1_40cm_4_scaffold_428_9
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

5409..6818
DNA (1410bp) protein (470aa)
tRNA(Ile)-lysidine synthetase; K04075 tRNA(Ile)-lysidine synthase [EC:6.3.4.19] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
tRNA(Ile)-lysidine synthase id=4681946 bin=GWA2_Methylomirabilis_73_35 species=Thermosinus carboxydivorans genus=Thermosinus taxon_order=Selenomonadales taxon_class=Negativicutes phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
tRNA(Ile)-lysidine synthetase
13_1_40cm_4_scaffold_428_10
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

6887..8266
DNA (1380bp) protein (460aa)
degQ; protease degQ (EC:3.4.21.-); K04772 serine protease DegQ [EC:3.4.21.-] Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
Protease Do id=4681947 bin=GWA2_Methylomirabilis_73_35 species=Geobacter metallireducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
degQ; periplasmic trypsin-like serine protease lipoprotein DegQ
13_1_40cm_4_scaffold_428_11
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

8263..9213
DNA (951bp) protein (317aa)
two component sigma54 specific Fis family transcriptional regulator Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Response regulator id=4232767 bin=GWC2_Methylomirabilis_70_16 species=Pelotomaculum thermopropionicum genus=Pelotomaculum taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
sigma-54 dependent transcriptional regulator
13_1_40cm_4_scaffold_428_12
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

9165..9695
DNA (531bp) protein (177aa)
two component sigma54 specific Fis family transcriptional regulator Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
AtoC; response regulator; K07714 two-component system, NtrC family, response regulator AtoC id=14626375 bin=bin7_NC10_sister species=Desulfotignum phosphitoxidans genus=Desulfotignum taxon_order=Desulfobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=bin7_NC10_sister organism_group=NC10
Fis family transcriptional regulator
13_1_40cm_4_scaffold_428_13
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

9692..11257
DNA (1566bp) protein (522aa)
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Exported protein id=3824666 bin=GWC2_Methylomirabilis_70_16 species=Candidatus Nitrospira defluvii genus=Nitrospira taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
hypothetical protein
13_1_40cm_4_scaffold_428_14
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(11324..12475)
DNA (1152bp) protein (384aa)
LysM domain-containing protein 2; K08086 pilus assembly protein FimV Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
WGS project CABT00000000 data, contig 2.14 id=3824668 bin=GWC2_Methylomirabilis_70_16 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
13_1_40cm_4_scaffold_428_15
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(12579..13748)
DNA (1170bp) protein (390aa)
LysM domain-containing protein 2; K08086 pilus assembly protein FimV Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
WGS project CABT00000000 data, contig 2.14 id=3824668 bin=GWC2_Methylomirabilis_70_16 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
PEP-CTERM motif protein
13_1_40cm_4_scaffold_428_16
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(13977..14606)
DNA (630bp) protein (210aa)
pmtA; phosphatidylethanolamine N-methyltransferase (EC:2.1.1.17) Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
pmtA; phosphatidylethanolamine N-methyltransferase (EC:2.1.1.17)
Similar to phosphatidylethanolamine N-methyltransferase id=4866643 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_40cm_4_scaffold_428_17
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(14721..16067)
DNA (1347bp) protein (449aa)
Mg/Co/Ni transporter; K06213 magnesium transporter Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
magnesium transporter; K06213 magnesium transporter id=14626380 bin=bin7_NC10_sister species=Herpetosiphon aurantiacus genus=Herpetosiphon taxon_order=Herpetosiphonales taxon_class=Chloroflexi phylum=Chloroflexi tax=bin7_NC10_sister organism_group=NC10
Mg/Co/Ni transporter
13_1_40cm_4_scaffold_428_18
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

Not on your lists

comp(16064..17431)
DNA (1368bp) protein (456aa)
Phosphoesterase, RecJ domain protein id=4139262 bin=GWF2_Methylomirabilis_70_14 species=Syntrophobacter fumaroxidans genus=Syntrophobacter taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
phosphoesterase domain-containing protein Tax=GWA2_Rokubacteria_70_23_curated
hypothetical protein
13_1_40cm_4_scaffold_428_19
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(17478..18926)
DNA (1449bp) protein (483aa)
aspartate ammonia-lyase (EC:4.2.1.2); K01744 aspartate ammonia-lyase [EC:4.3.1.1] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
aspA; aspartate ammonia-lyase (EC:4.3.1.1)
Fumarate hydratase class II id=4866639 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=Anaeromyxobacter taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_40cm_4_scaffold_428_20
unknown

Not on your lists

comp(18942..19178)
DNA (237bp) protein (79aa)

This feature has no annotations

13_1_40cm_4_scaffold_428_21
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists

comp(19334..21574)
DNA (2241bp) protein (747aa)
Alpha,alpha-trehalose-phosphate synthase (EC:2.4.1.15); K00697 trehalose 6-phosphate synthase [EC:2.4.1.15] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
Alpha,alpha-trehalose-phosphate synthase (EC:2.4.1.15)
Alpha,alpha-trehalose-phosphate synthase (UDP-forming) id=4183572 bin=GWF2_Methylomirabilis_70_14 species=RBG1 genus=RBG1 taxon_order=RBG1 taxon_class=RBG1 phylum=Zixibacteria tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_40cm_4_scaffold_428_22
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(21603..22802)
DNA (1200bp) protein (400aa)
apgM; 2,3-bisphosphoglycerate-independent phosphoglycerate mutase (Phosphoglyceromutase) (BPG-independent PGAM) (aPGAM) (EC:5.4.2.1) Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
apgM; 2,3-bisphosphoglycerate-independent phosphoglycerate mutase (Phosphoglyceromutase) (BPG-independent PGAM) (aPGAM) (EC:5.4.2.1)
Putative 2,3-bisphosphoglycerate-independent phosphoglycerate mutase (Phosphoglyceromutase) (BPG-independent PGAM) (APGAM) id=3020272 bin=GWF2_Methylomirabilis_70_14 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_40cm_4_scaffold_428_23
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(22893..23795)
DNA (903bp) protein (301aa)
5-oxopent-3-ene-1,2,5-tricarboxylate decarboxylase id=3020269 bin=GWF2_Methylomirabilis_70_14 species=unknown genus=Verminephrobacter taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
2-hydroxyhepta-2,4-diene-1,7-dioate isomerase Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
2-hydroxyhepta-2,4-diene-1,7-dioate isomerase
13_1_40cm_4_scaffold_428_24
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

23956..24345
DNA (390bp) protein (130aa)
Putative uncharacterized protein id=3020266 bin=GWF2_Methylomirabilis_70_14 species=Pelobacter propionicus genus=Pelobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
Putative uncharacterized protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
13_1_40cm_4_scaffold_428_25
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

24563..24697
DNA (135bp) protein (45aa)
id=3742536 Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
13_1_40cm_4_scaffold_428_26
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(24701..25081)
DNA (381bp) protein (127aa)
id=3020265 Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
id=3020265 bin=GWF2_Methylomirabilis_70_14 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_40cm_4_scaffold_428_27
R_NC10_66_22, NC10, Bacteria

Not on your lists

25126..25581
DNA (456bp) protein (152aa)
hypothetical protein n=1 Tax=Blautia producta RepID=UPI00037888C4
hypothetical protein; K06934 Tax=RIFCSPLOWO2_02_FULL_NC10_66_22_curated
hypothetical protein
13_1_40cm_4_scaffold_428_28
Anaeromyxobacter sp. Fw109-5, Anaeromyxobacter, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25651..26985
DNA (1335bp) protein (445aa)
Extracellular solute-binding protein family 1 n=1 Tax=Anaeromyxobacter sp. (strain Fw109-5) RepID=A7HAW9_ANADF
extracellular solute-binding protein
Extracellular solute-binding protein family 1 {ECO:0000313|EMBL:ABS25865.1}; TaxID=404589 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Cystobacterineae; Anaeromyxobacteraceae;
13_1_40cm_4_scaffold_428_29
Cupriavidus necator, Cupriavidus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26982..27968
DNA (987bp) protein (329aa)
ABC transporter permease n=1 Tax=Cupriavidus sp. UYPR2.512 RepID=UPI0003683B0D
ABC transporter permease
ABC transport system permease protein y4oQ {ECO:0000313|EMBL:AEI75620.1}; TaxID=1042878 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Cupriavidus.;" source=
13_1_40cm_4_scaffold_428_30
CSP1_5_NC10, NC10, Bacteria

Not on your lists

27977..28834
DNA (858bp) protein (286aa)
binding-protein-dependent transport system inner membrane protein; K02026 multiple sugar transport system permease protein id=14430377 bin=bin3_NC10 species=Nitrobacter hamburgensis genus=Nitrobacter taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=bin3_NC10 organism_group=NC10
binding-protein-dependent transport system inner membrane protein; K02026 multiple sugar transport system permease protein Tax=CSP1_5_NC10
Binding-protein-dependent transport systems inner membrane component
Displaying items 1-30 of 36 in total

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