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13_1_40cm_4_scaffold_4388

Search features with annotation key words

Displaying 27 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_40cm_4_scaffold_4388_1
R_Acidobacteria_67_28, Acidobacteria, Bacteria

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comp(2..898)
DNA (897bp) protein (299aa)
gdh1, GDH, legdh1; glutamate dehydrogenase (EC:1.4.1.3) Tax=RIFCSPHIGHO2_01_FULL_Acidobacteria_67_28_curated
glutamate dehydrogenase (EC:1.4.1.3)
Glutamate dehydrogenase n=1 Tax=Thermomicrobium roseum (strain ATCC 27502 / DSM 5159 / P-2) RepID=B9KZK6_THERP
13_1_40cm_4_scaffold_4388_2
GWC2_Gemmatimonadetes_71_10_curated, Gemmatimonadetes, Bacteria

Not on your lists

comp(994..2121)
DNA (1128bp) protein (376aa)
Tetratricopeptide TPR_1 repeat-containing protein n=1 Tax=Oscillatoria nigro-viridis PCC 7112 RepID=K9VQ12_9CYAN
TPR-repeat-containing protein Tax=GWC2_Gemmatimonadetes_71_10_curated
Tetratricopeptide TPR_1 repeat-containing protein
13_1_40cm_4_scaffold_4388_3
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

2191..3528
DNA (1338bp) protein (446aa)
Peptidase M20 n=1 Tax=Solibacter usitatus (strain Ellin6076) RepID=Q02CS1_SOLUE
acetylornithine deacetylase/succinyldiaminopimelate desuccinylase-like deacylase Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
peptidase M20
13_1_40cm_4_scaffold_4388_4
CSP1_3_Armatimonadetes, Armatimonadetes, Bacteria

Not on your lists

comp(4033..4668)
DNA (636bp) protein (212aa)
molybdopterin-binding oxidoreductase; K07147 id=14632273 bin=bin9_gal15 species=unknown genus=Roseiflexus taxon_order=Chloroflexales taxon_class=Chloroflexi phylum=Chloroflexi tax=bin9_gal15 organism_group=GAL15
molybdopterin-binding oxidoreductase; K07147 Tax=CSP1_3_Armatimonadetes
oxidoreductase molybdopterin binding protein
13_1_40cm_4_scaffold_4388_5
GWC2_Gemmatimonadetes_71_10_curated, Gemmatimonadetes, Bacteria

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comp(5105..5347)
DNA (243bp) protein (81aa)
lipB; lipoyltransferase (EC:2.3.1.181); K03801 lipoyl(octanoyl) transferase [EC:2.3.1.181] Tax=GWC2_Gemmatimonadetes_71_10_curated
lipB; lipoate biosynthesis protein B; Lipoate-protein ligase; Octanoyltransferase (EC:2.3.1.181)
Octanoyltransferase n=1 Tax=Gloeobacter violaceus (strain PCC 7421) RepID=LIPB_GLOVI
13_1_40cm_4_scaffold_4388_6
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

comp(5344..5667)
DNA (324bp) protein (108aa)
Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
13_1_40cm_4_scaffold_4388_7
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

comp(5763..7154)
DNA (1392bp) protein (464aa)
dihydrolipoamide dehydrogenase (EC:1.8.1.4); K00382 dihydrolipoamide dehydrogenase [EC:1.8.1.4] Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
Dihydrolipoyl dehydrogenase n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A6C7_GEMAT
dihydrolipoamide dehydrogenase
13_1_40cm_4_scaffold_4388_8
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

comp(7249..8547)
DNA (1299bp) protein (433aa)
pdhC; pyruvate dehydrogenase E2 component (EC:2.3.1.12); K00627 pyruvate dehydrogenase E2 component (dihydrolipoamide acetyltransferase) [EC:2.3.1.12] Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_cur
pdhC; pyruvate dehydrogenase E2 component (EC:2.3.1.12)
Pyruvate dehydrogenase E2 component n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A6D0_GEMAT
13_1_40cm_4_scaffold_4388_9
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

Not on your lists

comp(8553..9533)
DNA (981bp) protein (327aa)
pdhB; pyruvate dehydrogenase E1 component beta subunit (EC:1.2.4.1); K00162 pyruvate dehydrogenase E1 component subunit beta [EC:1.2.4.1] Tax=RBG_16_Gemmatimonadetes_66_8_curated
Pyruvate dehydrogenase E1 component beta subunit n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A6D1_GEMAT
Transketolase central region
13_1_40cm_4_scaffold_4388_10
GWC2_Gemmatimonadetes_71_10_curated, Gemmatimonadetes, Bacteria

Not on your lists

comp(9533..10540)
DNA (1008bp) protein (336aa)
pdhA; pyruvate dehydrogenase E1 component alpha subunit (EC:1.2.4.1); K00161 pyruvate dehydrogenase E1 component subunit alpha [EC:1.2.4.1] Tax=GWC2_Gemmatimonadetes_71_10_curated
pdhA; pyruvate dehydrogenase E1 component alpha subunit (EC:1.2.4.1)
Pyruvate dehydrogenase E1 component alpha subunit n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A6D2_GEMAT
13_1_40cm_4_scaffold_4388_11
R_Gemmatimonadetes_71_11, Gemmatimonadetes, Bacteria

Not on your lists

comp(10537..11445)
DNA (909bp) protein (303aa)
lipA; lipoyl synthase (EC:2.8.1.8); K03644 lipoic acid synthetase [EC:2.8.1.8] Tax=RIFCSPLOWO2_02_FULL_Gemmatimonadetes_71_11_curated
Lipoyl synthase n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A6D3_GEMAT
Lipoyl synthase
13_1_40cm_4_scaffold_4388_12
GWC2_Gemmatimonadetes_71_10_curated, Gemmatimonadetes, Bacteria

Not on your lists

comp(11492..12493)
DNA (1002bp) protein (334aa)
Uncharacterized protein n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A7G4_GEMAT
hypothetical protein Tax=GWC2_Gemmatimonadetes_71_10_curated
hypothetical protein
13_1_40cm_4_scaffold_4388_13
GWC2_Gemmatimonadetes_71_10_curated, Gemmatimonadetes, Bacteria

Not on your lists

comp(12495..13601)
DNA (1107bp) protein (369aa)
Oxidoreductase n=1 Tax=Streptomyces bottropensis ATCC 25435 RepID=M3EGN7_9ACTO
glycine oxidase ThiO Tax=GWC2_Gemmatimonadetes_71_10_curated
glycine oxidase
13_1_40cm_4_scaffold_4388_14
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

Not on your lists

13634..13837
DNA (204bp) protein (68aa)
Tax=RBG_16_Gemmatimonadetes_66_8_curated
13_1_40cm_4_scaffold_4388_15
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

Not on your lists

comp(13834..14799)
DNA (966bp) protein (322aa)
Uncharacterized protein n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4D6D2_9BACT
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AHG90209.1}; TaxID=861299 species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.;"
13_1_40cm_4_scaffold_4388_16
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

Not on your lists

comp(14796..16310)
DNA (1515bp) protein (505aa)
Uncharacterized protein n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A7N9_GEMAT
hypothetical protein Tax=RBG_16_Gemmatimonadetes_66_8_curated
glycosyl transferase family 2
13_1_40cm_4_scaffold_4388_17
RIFCSPLOWO2_12_FULL_Acidobacteria_66_10_curated, Acidobacteria, Bacteria

Not on your lists

comp(16322..17353)
DNA (1032bp) protein (344aa)
glycosyltransferase Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_66_10_curated
group 1 glycosyl transferase id=12556756 bin=CNBR_ACIDO species=16ft_combo_ws3 genus=16ft_combo_ws3 taxon_order=16ft_combo_ws3 taxon_class=16ft_combo_ws3 phylum=WS3 tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
group 1 glycosyl transferase
13_1_40cm_4_scaffold_4388_18
GWC2_Gemmatimonadetes_71_10_curated, Gemmatimonadetes, Bacteria

Not on your lists

comp(17414..19408)
DNA (1995bp) protein (665aa)
multi-sensor hybrid histidine kinase (EC:2.7.13.3); K02482 two-component system, NtrC family, sensor kinase [EC:2.7.13.3] Tax=GWC2_Gemmatimonadetes_71_10_curated
Multi-sensor hybrid histidine kinase n=1 Tax=Herpetosiphon aurantiacus (strain ATCC 23779 / DSM 785) RepID=A9AXH1_HERA2
multi-sensor hybrid histidine kinase
13_1_40cm_4_scaffold_4388_19
RBG_19FT_COMBO_Actinobacteria_70_19_curated, Actinobacteria, Bacteria

Not on your lists

comp(19405..19848)
DNA (444bp) protein (148aa)
Fis family transcriptional regulator n=1 Tax=Calescamantes bacterium SCGC AAA471-M6 RepID=UPI0003B5B0E0
hypothetical protein Tax=RBG_19FT_COMBO_Actinobacteria_70_19_curated
Fis family transcriptional regulator
13_1_40cm_4_scaffold_4388_20
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(19845..20537)
DNA (693bp) protein (231aa)
Peptidase C26 id=2304934 bin=GWA2_Methylomirabilis_73_35 species=Moorella thermoacetica genus=Moorella taxon_order=Thermoanaerobacterales taxon_class=Clostridia phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
Predicted glutamine amidotransferases Tax=GWA2_Rokubacteria_73_35_curated
Predicted glutamine amidotransferases
13_1_40cm_4_scaffold_4388_21
R_Ignavibacteria_55_14, Ignavibacteriales, Ignavibacteria, Ignavibacteriae, Bacteria

Not on your lists

comp(21041..23251)
DNA (2211bp) protein (737aa)
hypothetical protein n=2 Tax=Marinimicrobia bacterium JGI 0000039-D08 RepID=UPI0003A8E3DB
Iron complex outer membrane receptor protein; K02014 iron complex outermembrane recepter protein Tax=RIFCSPLOWO2_02_FULL_Ignavibacteria_55_14_curated
TonB-dependent receptor plug
13_1_40cm_4_scaffold_4388_22
unknown

Not on your lists

comp(23236..23733)
DNA (498bp) protein (166aa)

This feature has no annotations

13_1_40cm_4_scaffold_4388_23
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

Not on your lists

24021..24326
DNA (306bp) protein (102aa)
Uncharacterized protein n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A6D6_GEMAT
hypothetical protein Tax=RBG_16_Gemmatimonadetes_66_8_curated
hypothetical protein
13_1_40cm_4_scaffold_4388_24
R_Ignavibacteria_55_14, Ignavibacteriales, Ignavibacteria, Ignavibacteriae, Bacteria

Not on your lists

24435..25430
DNA (996bp) protein (332aa)
Putative uncharacterized protein id=4691060 bin=GWA2_Ignavibacteria_55_11 species=Rhodothermus marinus genus=Rhodothermus taxon_order=Bacteroidetes Order II. Incertae sedis taxon_class=unknown phylum=Bacteroidetes tax=GWA2_Ignavibacteria_55_11 organism_group=Ignavibacteria organism_desc=Closely related to GWC2 genome
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Ignavibacteria_55_14_curated
hypothetical protein
13_1_40cm_4_scaffold_4388_25
GWC2_Gemmatimonadetes_71_10_curated, Gemmatimonadetes, Bacteria

Not on your lists

25433..25828
DNA (396bp) protein (132aa)
Putative uncharacterized protein n=1 Tax=Rubrobacter xylanophilus (strain DSM 9941 / NBRC 16129) RepID=Q1AWF6_RUBXD
hypothetical protein Tax=GWC2_Gemmatimonadetes_71_10_curated
hypothetical protein
13_1_40cm_4_scaffold_4388_26
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

25828..27132
DNA (1305bp) protein (435aa)
DeoR family transcriptional regulator n=1 Tax=Vibrio breoganii RepID=UPI0003712434
proton/peptide symporter family protein; K03305 proton-dependent oligopeptide transporter, POT family Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
di-/tripeptide transporter
13_1_40cm_4_scaffold_4388_27
Cystobacter fuscus, Cystobacter, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

27133..27456
DNA (324bp) protein (108aa)
Di-/tripeptide transporter n=1 Tax=Cystobacter fuscus DSM 2262 RepID=S9NZ63_9DELT
Di-/tripeptide transporter {ECO:0000313|EMBL:EPX55327.1}; TaxID=1242864 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Cystobacterineae; Cystobacteraceae; Cystobacter.;" source=
amino acid/peptide transporter (peptide:H symporter)
Displaying 27 items

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