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13_1_40cm_4_scaffold_4313

Search features with annotation key words

Displaying 23 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_40cm_4_scaffold_4313_1
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(20..766)
DNA (747bp) protein (249aa)
LmbE family protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
LmbE family protein id=2306569 bin=GWA2_Methylomirabilis_73_35 species=Roseiflexus castenholzii genus=Roseiflexus taxon_order=Chloroflexales taxon_class=Chloroflexi phylum=Chloroflexi tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
LmbE family protein
13_1_40cm_4_scaffold_4313_2
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists

comp(785..2332)
DNA (1548bp) protein (516aa)
propionyl-CoA carboxylase (EC:6.4.1.3)
biotin dependent acyl-CoA carboxylase Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
Propionyl-CoA carboxylase beta chain id=4255771 bin=GWC2_Methylomirabilis_70_16 species=unknown genus=unknown taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
13_1_40cm_4_scaffold_4313_3

Not on your lists

comp(2435..3286)
DNA (852bp) protein (284aa)
Possible 3-oxoacyl-(Acyl-carrier-protein) reductase n=1 Tax=Rhodococcus sp. (strain RHA1) RepID=Q0RVK3_RHOSR
Uncharacterized protein {ECO:0000313|EMBL:KKM13411.1}; Flags: Fragment;; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
3-oxoacyl-(acyl-carrier-protein) reductase
13_1_40cm_4_scaffold_4313_4
unknown

Not on your lists

3480..3668
DNA (189bp) protein (63aa)

This feature has no annotations

13_1_40cm_4_scaffold_4313_5
R_Ignavibacteria_55_14, Ignavibacteriales, Ignavibacteria, Ignavibacteriae, Bacteria

Not on your lists

3822..4724
DNA (903bp) protein (301aa)
Anti-sigma-factor antagonist id=4337253 bin=GWC2_Ignavibacteria_56_12 species=Conexibacter woesei genus=Conexibacter taxon_order=Solirubrobacterales taxon_class=Actinobacteria phylum=Actinobacteria tax=GWC2_Ignavibacteria_56_12 organism_group=Ignavibacteria organism_desc=Larger genome
anti-sigma-factor antagonist Tax=RIFCSPLOWO2_02_FULL_Ignavibacteria_55_14_curated
anti-sigma-factor antagonist
13_1_40cm_4_scaffold_4313_6
R_Ignavibacteria_55_14, Ignavibacteriales, Ignavibacteria, Ignavibacteriae, Bacteria

Not on your lists

4741..5124
DNA (384bp) protein (128aa)
Antagonist protein RsbS id=4337252 bin=GWC2_Ignavibacteria_56_12 species=Mycobacterium xenopi genus=Mycobacterium taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=GWC2_Ignavibacteria_56_12 organism_group=Ignavibacteria organism_desc=Larger genome
anti-sigma-factor antagonist Tax=RIFCSPLOWO2_02_FULL_Ignavibacteria_55_14_curated
rsbS; putative sigma activity regulator RsbS
13_1_40cm_4_scaffold_4313_7
RIFCSPLOWO2_12_FULL_Acidobacteria_54_10_curated, Acidobacteria, Bacteria

Not on your lists

5102..5518
DNA (417bp) protein (139aa)
rsbT; switch protein/serine-threonine kinase; controls the activity of the piezosome (stressosome) (EC:2.7.11.1)
hypothetical protein n=1 Tax=Burkholderia sp. JPY347 RepID=UPI0003707C03
anti-sigma regulatory factor, serine/threonine protein kinase Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_54_10_curated
13_1_40cm_4_scaffold_4313_8
RIFCSPLOWO2_12_FULL_Acidobacteria_54_10_curated, Acidobacteria, Bacteria

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5506..6126
DNA (621bp) protein (207aa)
hypothetical protein n=1 Tax=Methylosarcina fibrata RepID=UPI0003615051
protein serine/threonine phosphatase Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_54_10_curated
rsbX; putative sigma activity regulating serine phosphatase RsbX
13_1_40cm_4_scaffold_4313_9
R_Ignavibacteria_55_14, Ignavibacteriales, Ignavibacteria, Ignavibacteriae, Bacteria

Not on your lists

6123..7457
DNA (1335bp) protein (445aa)
h16_A1985; signal transduction histidine kinase (EC:2.7.3.-)
Multi-sensor signal transduction histidine kinase id=4337249 bin=GWC2_Ignavibacteria_56_12 species=Dehalococcoides mccartyi genus=Dehalococcoides taxon_order=Dehalococcoidales taxon_class=Dehalococcoidia phylum=Chloroflexi tax=GWC2_Ignavibacteria_56_12 organism_group=Ignavibacteria organism_desc=Larger genome
sensory box sensor histidine kinase Tax=RIFCSPLOWO2_02_FULL_Ignavibacteria_55_14_curated
13_1_40cm_4_scaffold_4313_10
CSP1_5_NC10, NC10, Bacteria

Not on your lists

7429..8061
DNA (633bp) protein (211aa)
two component LuxR family transcriptional regulator id=14430684 bin=bin3_NC10 species=Pedosphaera parvula genus=Pedosphaera taxon_order=Verrucomicrobiales taxon_class=Verrucomicrobiae phylum=Verrucomicrobia tax=bin3_NC10 organism_group=NC10
two component LuxR family transcriptional regulator Tax=CSP1_5_NC10
LuxR family transcriptional regulator
13_1_40cm_4_scaffold_4313_11
RBG_16_Acidobacteria_68_9_curated, Acidobacteria, Bacteria

Not on your lists

8194..9105
DNA (912bp) protein (304aa)
Peptidoglycan-binding domain 1 protein n=1 Tax=Geobacter lovleyi (strain ATCC BAA-1151 / DSM 17278 / SZ) RepID=B3E4T0_GEOLS
Peptidoglycan-binding lysin domain-containing protein; K02450 general secretion pathway protein A Tax=RBG_16_Acidobacteria_68_9_curated
peptidoglycan-binding protein
13_1_40cm_4_scaffold_4313_12
Peptococcaceae bacterium BRH_c8a, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

9137..10108
DNA (972bp) protein (324aa)
Putative gluconeogenesis factor n=1 Tax=Desulfotomaculum gibsoniae DSM 7213 RepID=R4KK38_9FIRM
Putative gluconeogenesis factor {ECO:0000256|HAMAP-Rule:MF_00973}; TaxID=1629715 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptococcaceae.;" source="Peptococcaceae bacterium BRH_c8a.;"
hypothetical protein
13_1_40cm_4_scaffold_4313_13
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(10118..10468)
DNA (351bp) protein (117aa)
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
Putative uncharacterized protein id=2476408 bin=GWA2_Methylomirabilis_73_35 species=Treponema caldaria genus=Treponema taxon_order=Spirochaetales taxon_class=Spirochaetia phylum=Spirochaetes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein
13_1_40cm_4_scaffold_4313_14
Candidatus Entotheonella sp. TSY1, Candidatus Entotheonella, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10530..11438
DNA (909bp) protein (303aa)
Putative oxidoreductase n=1 Tax=Ilumatobacter coccineus YM16-304 RepID=M4ZXC1_9ACTN
Uncharacterized protein {ECO:0000313|EMBL:ETW99096.1}; TaxID=1429438 species="Bacteria; Proteobacteria; Deltaproteobacteria; Candidatus Entotheonella.;" source="Candidatus Entotheonella sp. TSY1.;"
putative oxidoreductase
13_1_40cm_4_scaffold_4313_15
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

11590..13620
DNA (2031bp) protein (677aa)
GAF sensor hybrid histidine kinase (EC:2.7.13.3)
GAF sensor hybrid histidine kinase Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
Multi-sensor hybrid histidine kinase id=4736662 bin=GWC2_Methylomirabilis_70_16 species=RBG1 genus=RBG1 taxon_order=RBG1 taxon_class=RBG1 phylum=Zixibacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
13_1_40cm_4_scaffold_4313_16
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

13653..14435
DNA (783bp) protein (261aa)
fabG; 3-ketoacyl-ACP reductase Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Short-chain dehydrogenase/reductase SDR id=3352303 bin=GWA2_Methylomirabilis_73_35 species=Bradyrhizobiaceae bacterium SG-6C genus=unknown taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
short chain dehydrogenase family protein 2
13_1_40cm_4_scaffold_4313_17
unknown

Not on your lists

comp(14436..14831)
DNA (396bp) protein (132aa)

This feature has no annotations

13_1_40cm_4_scaffold_4313_18
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

14966..16600
DNA (1635bp) protein (545aa)
thiamine pyrophosphate protein central region; K01652 acetolactate synthase I/II/III large subunit [EC:2.2.1.6] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Thiamine pyrophosphate protein id=4148695 bin=GWC2_Syntrophobacterales_56_13 species=Bacillus bataviensis genus=Bacillus taxon_order=Bacillales taxon_class=Bacilli phylum=Firmicutes tax=GWC2_Syntrophobacterales_56_13 organism_group=Deltaproteobacteria organism_desc=Good +
thiamine pyrophosphate protein central region
13_1_40cm_4_scaffold_4313_19
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

16889..18085
DNA (1197bp) protein (399aa)
formyl-CoA transferase (EC:2.8.3.16); K07749 formyl-CoA transferase [EC:2.8.3.16] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Formyl-CoA transferase n=1 Tax=Streptomyces turgidiscabies Car8 RepID=L7F1F2_9ACTO
formyl-coenzyme A transferase
13_1_40cm_4_scaffold_4313_20
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

18307..18741
DNA (435bp) protein (145aa)
two-component system sensor protein (EC:2.7.3.-) Tax=GWA2_Rokubacteria_73_35_curated
cetoacetate metabolism regulatory protein atoC id=2772883 bin=GWA2_Methylomirabilis_73_35 species=Gemmata obscuriglobus genus=Gemmata taxon_order=Planctomycetales taxon_class=Planctomycetia phylum=Planctomycetes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
two component sigma54 specific Fis family transcriptional regulator
13_1_40cm_4_scaffold_4313_21
R_Betaproteobacteria_67_26, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18769..19968)
DNA (1200bp) protein (400aa)
hypothetical protein n=1 Tax=Pseudomonas pyrrocinia RepID=UPI00031AB7CB
amidohydrolase 2 Tax=RIFCSPLOWO2_02_FULL_Betaproteobacteria_67_26_curated
amidohydrolase 2
13_1_40cm_4_scaffold_4313_22
Candidatus Entotheonella sp. TSY2, Candidatus Entotheonella, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20064..20828
DNA (765bp) protein (255aa)
hypothetical protein n=1 Tax=Atribacteria bacterium SCGC AAA252-M02 RepID=UPI00037D6885
Uncharacterized protein {ECO:0000313|EMBL:ETX03688.1}; TaxID=1429439 species="Bacteria; Proteobacteria; Deltaproteobacteria; Candidatus Entotheonella.;" source="Candidatus Entotheonella sp. TSY2.;"
short-chain dehydrogenase/reductase SDR
13_1_40cm_4_scaffold_4313_23
Candidatus Nitrospira defluvii, Nitrospira, Nitrospirales, Nitrospira, Nitrospirae, Bacteria

Not on your lists

20978..22003
DNA (1026bp) protein (342aa)
Uncharacterized protein n=1 Tax=Candidatus Nitrospira defluvii RepID=D8PAU2_9BACT
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBK40351.1}; TaxID=330214 species="Bacteria; Nitrospirae; Nitrospirales; Nitrospiraceae; Nitrospira.;" source="Candidatus Nitrospira defluvii.;"
Displaying 23 items

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