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13_1_40cm_4_scaffold_454

Search features with annotation key words

Displaying 28 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_40cm_4_scaffold_454_1
unknown

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2..883
DNA (882bp) protein (294aa)

This feature has no annotations

13_1_40cm_4_scaffold_454_2
RBG_16_Archaea_50_20_curated, Archaea

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937..1344
DNA (408bp) protein (136aa)
Glycine cleavage system H protein n=1 Tax=Chloracidobacterium thermophilum (strain B) RepID=G2LFI9_CHLTF
gcsH4; glycine cleavage system protein H; K02437 glycine cleavage system H protein Tax=RBG_16_Archaea_50_20_curated
glycine cleavage system H protein
13_1_40cm_4_scaffold_454_3
RBG_16_Archaea_50_20_curated, Archaea

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1545..4277
DNA (2733bp) protein (911aa)
putative ATP-dependent helicase; K03724 ATP-dependent helicase Lhr and Lhr-like helicase [EC:3.6.4.-] Tax=RBG_16_Archaea_50_20_curated
Putative ATP-dependent helicase n=1 Tax=Methanocella paludicola (strain DSM 17711 / JCM 13418 / NBRC 101707 / SANAE) RepID=D1YUS9_METPS
putative ATP-dependent helicase
13_1_40cm_4_scaffold_454_4
RBG_16_Euryarchaeota_68_12_curated, Euryarchaeota, Archaea

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4394..5482
DNA (1089bp) protein (363aa)
PKD domain-containing protein id=24547293 bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=unknown genus=unknown taxon_order=unknown taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
wcoG; putative cell surface protein Tax=RBG_16_Euryarchaeota_68_12_curated
hypothetical protein
13_1_40cm_4_scaffold_454_5

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comp(5539..6378)
DNA (840bp) protein (280aa)
putative N-4 cytosine-specific methyltransferase (EC:2.1.1.113)
Putative N4-cytosine methylase n=1 Tax=Sulfolobus virus STSV2 RepID=K9MDN9_9VIRU
Putative N4-cytosine methylase {ECO:0000313|EMBL:AFU92044.1}; TaxID=1123964 species="Viruses; dsDNA viruses, no RNA stage; Bicaudaviridae; unclassified Bicaudaviridae.;" source="Sulfolobus virus STSV2
13_1_40cm_4_scaffold_454_6
Candidatus Nitrososphaera evergladensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

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comp(6607..7245)
DNA (639bp) protein (213aa)
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AIF84733.1}; TaxID=1459636 species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Candidatus Nitr
13_1_40cm_4_scaffold_454_7
Thermaerobacter subterraneus, Thermaerobacter, Clostridiales, Clostridia, Firmicutes, Bacteria

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7517..9802
DNA (2286bp) protein (762aa)
Subtilisin-like serine protease n=1 Tax=Thermaerobacter subterraneus DSM 13965 RepID=K6QCK6_9FIRM
Subtilisin-like serine protease {ECO:0000313|EMBL:EKP94276.1}; TaxID=867903 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiales Family XVII. Incertae Sedis; Thermaerobacter.;" sour
peptidase S8/S53 subtilisin kexin sedolisin
13_1_40cm_4_scaffold_454_8
Candidatus Caldiarchaeum subterraneum, Candidatus Caldiarchaeum, Thaumarchaeota, Archaea

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9972..10607
DNA (636bp) protein (212aa)
Beta-lactamase domain protein n=1 Tax=Candidatus Caldiarchaeum subterraneum RepID=E6N7E4_9ARCH
beta-lactamase domain protein
Beta-lactamase domain protein {ECO:0000313|EMBL:BAJ48213.1}; TaxID=311458 species="Archaea; Thaumarchaeota; unclassified Thaumarchaeota; Candidatus Caldiarchaeum.;" source="Candidatus Caldiarchaeum su
13_1_40cm_4_scaffold_454_9
Streptomyces tsukubaensis, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

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10744..11109
DNA (366bp) protein (122aa)
Pyridoxamine 5'-phosphate oxidase-related fmn-binding protein n=1 Tax=Streptomyces tsukubaensis NRRL18488 RepID=I2MXG2_9ACTO
pyridoxamine 5'-phosphate oxidase
Pyridoxamine 5'-phosphate oxidase-related fmn-binding protein {ECO:0000313|EMBL:EIF89459.1}; TaxID=1114943 species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" sourc
13_1_40cm_4_scaffold_454_10
unknown

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comp(10956..11513)
DNA (558bp) protein (186aa)

This feature has no annotations

13_1_40cm_4_scaffold_454_11
RBG_16_Ignavibacteria_34_14_curated, Ignavibacteriales, Ignavibacteria, Ignavibacteriae, Bacteria

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11684..12082
DNA (399bp) protein (133aa)
Putative oxidoreductase; K07305 peptide-methionine (R)-S-oxide reductase [EC:1.8.4.12] Tax=RBG_16_Ignavibacteria_34_14_curated
methionine-R-sulfoxide reductase (EC:1.8.4.12)
Peptide methionine sulfoxide reductase MsrB n=1 Tax=Methanohalobium evestigatum (strain DSM 3721 / OCM 161 / Z-7303) RepID=D7E729_METEZ
13_1_40cm_4_scaffold_454_12
RBG_13_Bathyarchaeota_46_16b_curated, Bathyarchaeota, Archaea

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12828..13367
DNA (540bp) protein (180aa)
Uncharacterized protein n=1 Tax=Thermofilum sp. 1910b RepID=S5Z8H2_9CREN
hypothetical protein Tax=RBG_13_Bathyarchaeota_46_16b_curated
hypothetical protein
13_1_40cm_4_scaffold_454_13
RBG_13_Bathyarchaeota_46_16b_curated, Bathyarchaeota, Archaea

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13371..14345
DNA (975bp) protein (325aa)
Uncharacterized protein n=1 Tax=Thermofilum pendens (strain Hrk 5) RepID=A1RZ05_THEPD
hypothetical protein Tax=RBG_13_Bathyarchaeota_46_16b_curated
hypothetical protein
13_1_40cm_4_scaffold_454_14
RBG_16_Archaea_50_20_curated, Archaea

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14342..14920
DNA (579bp) protein (193aa)
RNA-binding protein, containing S1 domain n=2 Tax=Methanosarcina mazei RepID=M1QJY3_METMZ
RNA binding protein; K07573 exosome complex component CSL4 Tax=RBG_16_Archaea_50_20_curated
RNA-binding protein, containing S1 domain
13_1_40cm_4_scaffold_454_15
RBG_13_Bathyarchaeota_46_16b_curated, Bathyarchaeota, Archaea

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14917..15204
DNA (288bp) protein (96aa)
DNA-directed RNA polymerase subunit L n=2 Tax=Pyrococcus furiosus RepID=RPOL_PYRFU
DNA-directed RNA polymerase subunit L Tax=RBG_13_Bathyarchaeota_46_16b_curated
DNA-directed RNA polymerase subunit L
13_1_40cm_4_scaffold_454_16
Paenibacillus beijingensis, Paenibacillus, Bacillales, Bacilli, Firmicutes, Bacteria

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15359..15901
DNA (543bp) protein (181aa)
Pyrophosphatase PpaX n=1 Tax=Candidatus Arthromitus sp. SFB-rat-Yit RepID=G2IEK1_9CLOT
pyrophosphatase
Pyrophosphatase {ECO:0000313|EMBL:AJY75017.1}; TaxID=1126833 species="Bacteria; Firmicutes; Bacilli; Bacillales; Paenibacillaceae; Paenibacillus.;" source="Paenibacillus beijingensis.;"
13_1_40cm_4_scaffold_454_17
RBG_16_Archaea_50_20_curated, Archaea

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15936..16313
DNA (378bp) protein (126aa)
Uncharacterized protein n=1 Tax=Pyrococcus abyssi (strain GE5 / Orsay) RepID=Q9UZ44_PYRAB
hypothetical protein Tax=RBG_16_Archaea_50_20_curated
hypothetical protein
13_1_40cm_4_scaffold_454_18
unknown

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16310..16789
DNA (480bp) protein (160aa)

This feature has no annotations

13_1_40cm_4_scaffold_454_19
RBG_16_Archaea_50_20_curated, Archaea

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16897..17157
DNA (261bp) protein (87aa)
DNA-directed RNA polymerase subunit n=1 Tax=Thermococcus litoralis DSM 5473 RepID=H3ZPL5_THELI
DNA-directed RNA polymerase subunit M Tax=RBG_16_Archaea_50_20_curated
DNA-directed RNA polymerase subunit M
13_1_40cm_4_scaffold_454_20
RBG_16_Archaea_50_20_curated, Archaea

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17238..17978
DNA (741bp) protein (247aa)
DNA polymerase sliding clamp n=1 Tax=Pyrobaculum calidifontis (strain JCM 11548 / VA1) RepID=A3MUU8_PYRCJ
proliferating cell nuclear antigen PcnA; K04802 proliferating cell nuclear antigen Tax=RBG_16_Archaea_50_20_curated
pcn; proliferating cell nuclear antigen
13_1_40cm_4_scaffold_454_21
RBG_16_Archaea_50_20_curated, Archaea

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17985..19037
DNA (1053bp) protein (351aa)
priB; DNA primase, large subunit; K02685 DNA primase large subunit [EC:2.7.7.-] Tax=RBG_16_Archaea_50_20_curated
DNA primase large subunit PriL n=1 Tax=Methanocella paludicola (strain DSM 17711 / JCM 13418 / NBRC 101707 / SANAE) RepID=D1Z119_METPS
priB; DNA primase large subunit
13_1_40cm_4_scaffold_454_22
RBG_16_Archaea_50_20_curated, Archaea

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19024..20238
DNA (1215bp) protein (405aa)
putative DNA primase, small subunit; K02683 DNA primase [EC:2.7.7.-] Tax=RBG_16_Archaea_50_20_curated
DNA primase small subunit (EC:2.7.7.-)
DNA primase small subunit PriS n=1 Tax=Candidatus Caldiarchaeum subterraneum RepID=E6N7C9_9ARCH
13_1_40cm_4_scaffold_454_23
RBG_13_Bathyarchaeota_46_16b_curated, Bathyarchaeota, Archaea

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20304..20867
DNA (564bp) protein (188aa)
Uncharacterized protein n=1 Tax=Candidatus Nitrosoarchaeum limnia SFB1 RepID=F3KLY9_9ARCH
hypothetical protein Tax=RBG_13_Bathyarchaeota_46_16b_curated
hypothetical protein
13_1_40cm_4_scaffold_454_24
RBG_16_Archaea_50_20_curated, Archaea

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21400..22191
DNA (792bp) protein (264aa)
Translation initiation factor 2 subunit alpha n=1 Tax=Methanopyrus kandleri (strain AV19 / DSM 6324 / JCM 9639 / NBRC 100938) RepID=IF2A_METKA
translation initiation factor 2, subunit alpha; K03237 translation initiation factor 2 subunit 1 Tax=RBG_16_Archaea_50_20_curated
SUI2; translation initiation factor IF-2 subunit alpha
13_1_40cm_4_scaffold_454_25
RBG_16_Archaea_50_20_curated, Archaea

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comp(22357..24939)
DNA (2583bp) protein (861aa)
Putative uncharacterized protein n=1 Tax=Candidatus Caldiarchaeum subterraneum RepID=E6N5Y4_9ARCH
hypothetical protein Tax=RBG_16_Archaea_50_20_curated
hypothetical protein
13_1_40cm_4_scaffold_454_26
unknown

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comp(25342..25656)
DNA (315bp) protein (105aa)

This feature has no annotations

13_1_40cm_4_scaffold_454_trna_1
unknown

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comp(25755..25862)
DNA (108bp)
transferRNA
13_1_40cm_4_scaffold_454_27
unknown

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26548..26775
DNA (228bp) protein (76aa)

This feature has no annotations

Displaying 28 items

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