ggKbase home page

13_1_40cm_4_scaffold_4437

Search features with annotation key words

Displaying items 1-30 of 32 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_40cm_4_scaffold_4437_1
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(1..489)
DNA (489bp) protein (163aa)
Pm20d; peptidase M20 domain-containing protein 2 (Aminoacylase 1-like protein 2) Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Amidohydrolase id=3861039 bin=GWC2_Methylomirabilis_70_16 species=Sphaerobacter thermophilus genus=Sphaerobacter taxon_order=Sphaerobacterales taxon_class=Thermomicrobia phylum=Chloroflexi tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
hypothetical protein
13_1_40cm_4_scaffold_4437_2
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(494..1657)
DNA (1164bp) protein (388aa)
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Uncharacterized protein id=2773044 bin=GWA2_Methylomirabilis_73_35 species=Paenibacillus mucilaginosus genus=Paenibacillus taxon_order=Bacillales taxon_class=Bacilli phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
amidohydrolase
13_1_40cm_4_scaffold_4437_3
unknown

Not on your lists

comp(1638..1922)
DNA (285bp) protein (95aa)

This feature has no annotations

13_1_40cm_4_scaffold_4437_4
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

2123..2650
DNA (528bp) protein (176aa)
Putative Luciferase-like monooxygenase id=2772886 bin=GWA2_Methylomirabilis_73_35 species=uncultured marine microorganism HF4000_APKG5H11 genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
flavin-dependent oxidoreductase, F420-dependent methylene-tetrahydromethanopterin reductase Tax=GWA2_Rokubacteria_73_35_curated
Luciferase-like, subgroup
13_1_40cm_4_scaffold_4437_5
unknown

Not on your lists

comp(2703..3194)
DNA (492bp) protein (164aa)

This feature has no annotations

13_1_40cm_4_scaffold_4437_6
unknown

Not on your lists

comp(3258..3542)
DNA (285bp) protein (95aa)

This feature has no annotations

13_1_40cm_4_scaffold_4437_7
Gloeocapsa sp. PCC 7428, Gloeocapsa, Chroococcales, Oscillatoriophycideae, Cyanobacteria, Bacteria

Not on your lists

3789..4733
DNA (945bp) protein (315aa)
PAS/PAC sensor hybrid histidine kinase (EC:2.7.13.3)
PAS/PAC sensor hybrid histidine kinase {ECO:0000313|EMBL:AFZ31560.1}; EC=2.7.13.3 {ECO:0000313|EMBL:AFZ31560.1};; TaxID=1173026 species="Bacteria; Cyanobacteria; Oscillatoriophycideae; Chroococcales;
PAS/PAC sensor hybrid histidine kinase n=1 Tax=Gloeocapsa sp. PCC 7428 RepID=K9XG21_9CHRO
13_1_40cm_4_scaffold_4437_8
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(4778..5644)
DNA (867bp) protein (289aa)
putative isocitrate lyase-family protein, Putative carboxyvinyl-carboxyphosphonate phosphorylmutase (EC:2.7.8.23 4.1.3.-)
putative isocitrate lyase-family protein, Putative carboxyvinyl-carboxyphosphonate phosphorylmutase Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
Putative isocitrate lyase-family protein, Putative carboxyvinyl-carboxyphosphonate phosphorylmutase id=2772881 bin=GWA2_Methylomirabilis_73_35 species=Blastococcus saxobsidens genus=Blastococcus taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_40cm_4_scaffold_4437_9
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

5772..6680
DNA (909bp) protein (303aa)
ATPase Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Putative uncharacterized protein id=4602158 bin=GWF2_Methylomirabilis_70_14 species=Desulfobacterium autotrophicum genus=Desulfobacterium taxon_order=Desulfobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
ATPase
13_1_40cm_4_scaffold_4437_10
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

6948..8093
DNA (1146bp) protein (382aa)
hypothetical protein; K07161 Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Carbon monoxide dehydrogenase E protein id=4232684 bin=GWC2_Methylomirabilis_70_16 species=unknown genus=Myxococcus taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
hypothetical protein
13_1_40cm_4_scaffold_4437_11
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

8090..8770
DNA (681bp) protein (227aa)
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Uncharacterized protein id=3285641 bin=GWC2_Methylomirabilis_70_24 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
hypothetical protein
13_1_40cm_4_scaffold_4437_12
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8790..9134
DNA (345bp) protein (115aa)
hypothetical protein Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
13_1_40cm_4_scaffold_4437_13
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

9730..10770
DNA (1041bp) protein (347aa)
thiol-disulfide oxidoreductase domain-containing protein Tax=GWA2_Rokubacteria_73_35_curated
hypothetical protein MkanA1_05815 id=2589429 bin=GWA2_Methylomirabilis_73_35 species=Hyphomonas neptunium genus=Hyphomonas taxon_order=Rhodobacterales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein
13_1_40cm_4_scaffold_4437_14
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

10781..11062
DNA (282bp) protein (94aa)
selenoprotein Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
Selenoprotein id=3285643 bin=GWC2_Methylomirabilis_70_24 species=Geodermatophilus obscurus genus=Geodermatophilus taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
selenoprotein
13_1_40cm_4_scaffold_4437_15
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

11084..11302
DNA (219bp) protein (73aa)
Selenoprotein id=2589430 bin=GWA2_Methylomirabilis_73_35 species=Roseobacter sp. GAI101 genus=Roseobacter taxon_order=Rhodobacterales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
selenoprotein Tax=GWA2_Rokubacteria_73_35_curated
selenoprotein
13_1_40cm_4_scaffold_4437_16
unknown

Not on your lists

11862..12158
DNA (297bp) protein (99aa)

This feature has no annotations

13_1_40cm_4_scaffold_4437_17
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

12328..12735
DNA (408bp) protein (136aa)
UPI0003D60502 related cluster n=1 Tax=unknown RepID=UPI0003D60502
putative dioxygenase Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
hypothetical protein
13_1_40cm_4_scaffold_4437_18
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

12732..13013
DNA (282bp) protein (94aa)
Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
13_1_40cm_4_scaffold_4437_19
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(13148..13654)
DNA (507bp) protein (169aa)
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
Putative uncharacterized protein id=2589434 bin=GWA2_Methylomirabilis_73_35 species=Comamonas testosteroni genus=Comamonas taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein
13_1_40cm_4_scaffold_4437_20
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(13663..14883)
DNA (1221bp) protein (407aa)
propanoyl-CoA C-acyltransferase (EC:2.3.1.176) Tax=GWA2_Rokubacteria_73_35_curated
Putative lipid-transfer protein id=2589435 bin=GWA2_Methylomirabilis_73_35 species=uncultured bacterium 888 genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
thiolase
13_1_40cm_4_scaffold_4437_21
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(14955..16247)
DNA (1293bp) protein (431aa)
Twin-arginine translocation pathway signal id=2589436 bin=GWA2_Methylomirabilis_73_35 species=Burkholderia thailandensis genus=Burkholderia taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
major facilitator transporter Tax=GWA2_Rokubacteria_73_35_curated
major facilitator superfamily protein
13_1_40cm_4_scaffold_4437_22
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(16249..18924)
DNA (2676bp) protein (892aa)
uvrA; excinuclease ABC subunit A; K03701 excinuclease ABC subunit A Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Excinuclease ABC, subunit A id=4232696 bin=GWC2_Methylomirabilis_70_16 species=Candidatus Nitrospira defluvii genus=Nitrospira taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
uvrA; excinuclease ABC subunit A
13_1_40cm_4_scaffold_4437_23
GWC2_RIF_CHLX_73_18_curated, RIF-CHLX, Bacteria

Not on your lists

comp(18921..20648)
DNA (1728bp) protein (576aa)
Histidine kinase (EC:2.7.13.3) Tax=GWC2_RIF_CHLX_73_18_curated
Putative Histidine kinase id=2877061 bin=GWC2_Chloroflexi_73_18 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Chloroflexi_73_18 organism_group=Chloroflexi organism_desc=Good +
PAS sensor protein
13_1_40cm_4_scaffold_4437_24
R_Rokubacteria_68_19, Rokubacteria, Bacteria

Not on your lists

comp(20645..21262)
DNA (618bp) protein (206aa)
integral membrane sensor signal transduction histidine kinase Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_68_19_curated
multi-sensor signal transduction histidine kinase
13_1_40cm_4_scaffold_4437_25
unknown

Not on your lists

21609..21860
DNA (252bp) protein (84aa)

This feature has no annotations

13_1_40cm_4_scaffold_4437_26
R_Rokubacteria_68_19, Rokubacteria, Bacteria

Not on your lists

21953..23782
DNA (1830bp) protein (610aa)
response regulator in two-component reguatory system, sigma54 dependent transcriptional regulator id=14626361 bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin7_NC10_sister organism_group=NC10
response regulator in two-component reguatory system, sigma54 dependent transcriptional regulator Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_68_19_curated
response regulator in two-component reguatory system, sigma54 dependent transcriptional regulator
13_1_40cm_4_scaffold_4437_27
unknown

Not on your lists

23937..24188
DNA (252bp) protein (84aa)

This feature has no annotations

13_1_40cm_4_scaffold_4437_28
unknown

Not on your lists

24289..24609
DNA (321bp) protein (107aa)

This feature has no annotations

13_1_40cm_4_scaffold_4437_29
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(25033..25761)
DNA (729bp) protein (243aa)
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
hypothetical protein id=14626359 bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=bin7_NC10_sister organism_group=NC10
hypothetical protein
13_1_40cm_4_scaffold_4437_30
Entamoeba invadens, Entamoeba, Eukaryota

Not on your lists

comp(25792..26073)
DNA (282bp) protein (94aa)
Uncharacterized protein n=1 Tax=Entamoeba invadens RepID=S0B3I3_ENTIV
Uncharacterized protein {ECO:0000313|EMBL:BAN42018.1}; TaxID=33085 species="Eukaryota; Amoebozoa; Archamoebae; Entamoebidae; Entamoeba.;" source="Entamoeba invadens.;"
hypothetical protein
Displaying items 1-30 of 32 in total

View Taxonomy