ggKbase home page

13_1_40cm_4_scaffold_460

Search features with annotation key words

Displaying 28 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_40cm_4_scaffold_460_trna_1
unknown

Not on your lists

comp(935..1060)
DNA (126bp)
transferRNA
13_1_40cm_4_scaffold_460_1
RBG_13_Bathyarchaeota_52_12_curated, Bathyarchaeota, Archaea

Not on your lists

1363..2211
DNA (849bp) protein (283aa)
hypothetical protein n=1 Tax=unclassified Crenarchaeota (miscellaneous) RepID=UPI00035E799E
peptidase M50 Tax=RBG_13_Bathyarchaeota_52_12_curated
peptidase M50
13_1_40cm_4_scaffold_460_2
Methanopyrus kandleri, Methanopyrus, Methanopyrales, Methanopyri, Euryarchaeota, Archaea

Not on your lists

comp(2367..3155)
DNA (789bp) protein (263aa)
Probable tRNA pseudouridine synthase B {ECO:0000255|HAMAP-Rule:MF_01081}; EC=5.4.99.25 {ECO:0000255|HAMAP-Rule:MF_01081};; tRNA pseudouridine(55) synthase {ECO:0000255|HAMAP-Rule:MF_01081}; Short=Psi5
Probable tRNA pseudouridine synthase B n=1 Tax=Methanopyrus kandleri (strain AV19 / DSM 6324 / JCM 9639 / NBRC 100938) RepID=TRUB_METKA
TruB; H/ACA RNA-protein complex component Cbf5p
13_1_40cm_4_scaffold_460_3
RBG_16_Bathyarchaeota_48_13_curated, Bathyarchaeota, Archaea

Not on your lists

comp(3131..3409)
DNA (279bp) protein (93aa)
trub; H/ACA RNA-protein complex component Cbf5p (EC:4.2.1.70); K11131 H/ACA ribonucleoprotein complex subunit 4 [EC:5.4.99.-] Tax=RBG_16_Bathyarchaeota_48_13_curated
Probable tRNA pseudouridine synthase B n=1 Tax=Methanopyrus kandleri (strain AV19 / DSM 6324 / JCM 9639 / NBRC 100938) RepID=TRUB_METKA
TruB; H/ACA RNA-protein complex component Cbf5p
13_1_40cm_4_scaffold_460_4
RBG_16_Archaea_50_20_curated, Archaea

Not on your lists

comp(3526..3822)
DNA (297bp) protein (99aa)
50S ribosomal protein L14e n=1 Tax=Sulfolobus islandicus (strain M.14.25 / Kamchatka #1) RepID=RL14E_SULIM
50S ribosomal protein L14e; K02875 large subunit ribosomal protein L14e Tax=RBG_16_Archaea_50_20_curated
50S ribosomal protein L14e
13_1_40cm_4_scaffold_460_5
CG_Micra_05, Micraarchaeota, Archaea

Not on your lists

comp(3949..4371)
DNA (423bp) protein (141aa)
S-adenosylmethionine decarboxylase proenzyme; K01611 S-adenosylmethionine decarboxylase [EC:4.1.1.50] Tax=CG_Micra_05
S-adenosylmethionine decarboxylase proenzyme (AdoMetDC)(SamDC) (EC:4.1.1.50)
S-adenosylmethionine decarboxylase proenzyme (AdoMetDC)(SamDC) n=1 Tax=Dictyoglomus thermophilum (strain ATCC 35947 / DSM 3960 / H-6-12) RepID=B5YF21_DICT6
13_1_40cm_4_scaffold_460_6
RBG_16_Archaea_50_20_curated, Archaea

Not on your lists


4723..5223
DNA (501bp) protein (167aa)
30S ribosomal protein S13 n=1 Tax=Candidatus Caldiarchaeum subterraneum RepID=E6N5D4_9ARCH
30S ribosomal protein S13; K02952 small subunit ribosomal protein S13 Tax=RBG_16_Archaea_50_20_curated
small subunit ribosomal protein S13
13_1_40cm_4_scaffold_460_7
RBG_16_Archaea_50_20_curated, Archaea

Not on your lists


5227..5913
DNA (687bp) protein (229aa)
30S ribosomal protein S4 n=1 Tax=Pyrococcus sp. (strain NA2) RepID=F4HJ21_PYRSN
30S ribosomal protein S4; K02986 small subunit ribosomal protein S4 Tax=RBG_16_Archaea_50_20_curated
30S ribosomal protein S4
13_1_40cm_4_scaffold_460_8
unknown

Not on your lists

5961..6500
DNA (540bp) protein (180aa)

This feature has no annotations

13_1_40cm_4_scaffold_460_9
RBG_16_Bathyarchaeota_48_13_curated, Bathyarchaeota, Archaea

Not on your lists

6693..7283
DNA (591bp) protein (197aa)
DNA-directed RNA polymerase subunit D (EC:2.7.7.6); K03047 DNA-directed RNA polymerase subunit D [EC:2.7.7.6] Tax=RBG_16_Bathyarchaeota_48_13_curated
rpoD; DNA-directed RNA polymerase, subunit D (EC:2.7.7.6)
RNA polymerase insert n=1 Tax=Candidatus Nitrosopumilus sp. AR2 RepID=K0BB81_9ARCH
13_1_40cm_4_scaffold_460_10
Palaeococcus pacificus, Palaeococcus, Thermococcales, Thermococci, Euryarchaeota, Archaea

Not on your lists


7280..7741
DNA (462bp) protein (154aa)
50S ribosomal protein L13 n=1 Tax=Thermococcus kodakaraensis (strain ATCC BAA-918 / JCM 12380 / KOD1) RepID=RL13_THEKO
50S ribosomal protein L13
50S ribosomal protein L13 {ECO:0000256|HAMAP-Rule:MF_01366}; TaxID=1343739 species="Archaea; Euryarchaeota; Thermococci; Thermococcales; Thermococcaceae; Palaeococcus.;" source="Palaeococcus pacificus
13_1_40cm_4_scaffold_460_11
RBG_16_Archaea_50_20_curated, Archaea

Not on your lists


7876..8148
DNA (273bp) protein (91aa)
30S ribosomal protein S9 n=4 Tax=Methanobrevibacter RepID=A5UN58_METS3
rps9p; ribosomal protein S9P Rps9p; K02996 small subunit ribosomal protein S9 Tax=RBG_16_Archaea_50_20_curated
rps9p; 30S ribosomal protein S9P
13_1_40cm_4_scaffold_460_12
RBG_16_Archaea_50_20_curated, Archaea

Not on your lists


8156..8380
DNA (225bp) protein (75aa)
DNA-directed RNA polymerase subunit N n=1 Tax=Acidianus hospitalis (strain W1) RepID=F4B761_ACIHW
hypothetical protein Tax=RBG_16_Archaea_50_20_curated
RNA polymerase subunit N
13_1_40cm_4_scaffold_460_13
RBG_16_Archaea_50_20_curated, Archaea

Not on your lists


8394..9065
DNA (672bp) protein (224aa)
30S ribosomal protein S2 n=1 Tax=Sulfolobus tokodaii (strain DSM 16993 / JCM 10545 / NBRC 100140 / 7) RepID=RS2_SULTO
rps2P; 30S ribosomal protein S2; K02967 small subunit ribosomal protein S2 Tax=RBG_16_Archaea_50_20_curated
rps2P; 30S ribosomal protein S2
13_1_40cm_4_scaffold_460_14
RBG_13_Bathyarchaeota_46_16b_curated, Bathyarchaeota, Archaea

Not on your lists

9062..9910
DNA (849bp) protein (283aa)
MEMO1 family protein MK0963 n=1 Tax=Methanopyrus kandleri (strain AV19 / DSM 6324 / JCM 9639 / NBRC 100938) RepID=Y963_METKA
dioxygenase; K06990 Tax=RBG_13_Bathyarchaeota_46_16b_curated
dioxygenase
13_1_40cm_4_scaffold_460_15
RBG_13_Bathyarchaeota_38_9_curated, Bathyarchaeota, Archaea

Not on your lists

9907..10899
DNA (993bp) protein (331aa)
Mevalonate kinase (EC:2.7.1.36)
Mevalonate kinase n=1 Tax=Thermofilum sp. 1910b RepID=S5ZEG6_9CREN
hypothetical protein Tax=RBG_13_Bathyarchaeota_38_9_curated
13_1_40cm_4_scaffold_460_16
CG_CPArch01-01, CG_CPArch01, Archaea

Not on your lists

10969..11496
DNA (528bp) protein (176aa)
isopentenyl-diphosphate delta-isomerase; K01823 isopentenyl-diphosphate delta-isomerase [EC:5.3.3.2] Tax=CG_CPArch01-01
Isopentenyl-diphosphate delta-isomerase, type 1 n=1 Tax=Owenweeksia hongkongensis (strain DSM 17368 / JCM 12287 / NRRL B-23963) RepID=G8R784_OWEHD
isopentenyl-diphosphate delta-isomerase
13_1_40cm_4_scaffold_460_17
RBG_16_Archaea_50_20_curated, Archaea

Not on your lists

11530..12849
DNA (1320bp) protein (440aa)
hmgA-1; hydroxymethylglutaryl-CoA reductase, degradative (EC:1.1.1.34 1.1.1.88); K00054 hydroxymethylglutaryl-CoA reductase [EC:1.1.1.88] Tax=RBG_16_Archaea_50_20_curated
3-hydroxy-3-methylglutaryl-CoA reductase (EC:1.1.1.34)
3-hydroxy-3-methylglutaryl-CoA reductase n=1 Tax=Candidatus Caldiarchaeum subterraneum RepID=E6N5L6_9ARCH
13_1_40cm_4_scaffold_460_18
RBG_13_Bathyarchaeota_38_9_curated, Bathyarchaeota, Archaea

Not on your lists

comp(12805..13635)
DNA (831bp) protein (277aa)
putative (S)-2,3-Di-O-farnesylgeranylglyceryl synthase; K03179 4-hydroxybenzoate octaprenyltransferase [EC:2.5.1.-] Tax=RBG_13_Bathyarchaeota_38_9_curated
4-hydroxybenzoate octaprenyltransferase (EC:2.5.1.-)
hypothetical protein n=2 Tax=unclassified candidate division pSL4 RepID=UPI000382AB40
13_1_40cm_4_scaffold_460_19
CSP1_2_Dadabacteria, Dadabacteria, Bacteria

Not on your lists

13771..14241
DNA (471bp) protein (157aa)
ferritin; K03594 bacterioferritin id=14424664 bin=bin1_lowGC species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin1_lowGC organism_group=Unknown_CP
ferritin; K03594 bacterioferritin Tax=CSP1_2_Dadabacteria
hypothetical protein
13_1_40cm_4_scaffold_460_20
RBG_16_Thaumarchaeota_49_8_curated, Thaumarchaeota, TACK, Archaea

Not on your lists

comp(14259..15548)
DNA (1290bp) protein (430aa)
gdhA; glutamate dehydrogenase (EC:1.4.1.3) Tax=RBG_16_Thaumarchaeota_49_8_curated
glutamate dehydrogenase (EC:1.4.1.2 1.4.1.3)
Glu/Leu/Phe/Val dehydrogenase, C terminal n=1 Tax=uncultured organism RepID=M1Q2T1_9ZZZZ
13_1_40cm_4_scaffold_460_21
RBG_16_Archaea_50_20_curated, Archaea

Not on your lists

15737..17035
DNA (1299bp) protein (433aa)
Elongation factor 1-alpha n=1 Tax=uncultured archaeon RepID=G3C993_9ARCH
tuf; elongation factor 1-alpha Tax=RBG_16_Archaea_50_20_curated
tuf; elongation factor 1-alpha
13_1_40cm_4_scaffold_460_22
RBG_16_Archaea_50_20_curated, Archaea

Not on your lists


17252..17560
DNA (309bp) protein (103aa)
30S ribosomal protein S10 n=1 Tax=Halobacterium sp. DL1 RepID=G4IAF8_9EURY
rps10p; 30S ribosomal protein S10P; K02946 small subunit ribosomal protein S10 Tax=RBG_16_Archaea_50_20_curated
rps10p; 30S ribosomal protein S10
13_1_40cm_4_scaffold_460_23
RIFCSPLOWO2_12_FULL_Acidobacteria_60_22_curated, Acidobacteria, Bacteria

Not on your lists

comp(17567..19096)
DNA (1530bp) protein (510aa)
streptogramin lyase Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_60_22_curated
FG-GAP repeat protein id=3662872 bin=GWF2_Lentisphaerae_57_35 species=Desulfomonile tiedjei genus=Desulfomonile taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWF2_Lentisphaerae_57_35 organism_group=Lentisphaerae organism_desc=a459
13_1_40cm_4_scaffold_460_24
unknown

Not on your lists

comp(19119..19541)
DNA (423bp) protein (141aa)

This feature has no annotations

13_1_40cm_4_scaffold_460_25
Streptomyces sp. F2, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(19663..20364)
DNA (702bp) protein (234aa)
UPI0003D8486E related cluster n=1 Tax=unknown RepID=UPI0003D8486E
Uncharacterized protein {ECO:0000313|EMBL:AHE39508.1}; TaxID=317660 species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces sp. F2.;"
13_1_40cm_4_scaffold_460_26
Thaumarchaeota archaeon SCGC AB-539-E09, Thaumarchaeota, Archaea

Not on your lists

20648..21580
DNA (933bp) protein (311aa)
Site-specific recombinase XerD n=1 Tax=Thaumarchaeota archaeon SCGC AB-539-E09 RepID=M7TVH5_9ARCH
Site-specific recombinase XerD {ECO:0000313|EMBL:EMR73901.1}; TaxID=1198115 species="Archaea; Thaumarchaeota; unclassified Thaumarchaeota.;" source="Thaumarchaeota archaeon SCGC AB-539-E09.;"
phage integrase family site specific recombinase
13_1_40cm_4_scaffold_460_27
unknown

Not on your lists

comp(22361..22549)
DNA (189bp) protein (63aa)

This feature has no annotations

Displaying 28 items

View Taxonomy