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13_1_40cm_4_scaffold_4722

Search features with annotation key words

Displaying 28 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_40cm_4_scaffold_4722_1
unknown

Not on your lists

comp(1..804)
DNA (804bp) protein (268aa)

This feature has no annotations

13_1_40cm_4_scaffold_4722_2
Syntrophus aciditrophicus, Syntrophus, Syntrophobacterales, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(979..1371)
DNA (393bp) protein (131aa)
Response regulator receiver domain n=1 Tax=Syntrophus aciditrophicus (strain SB) RepID=Q2LQ08_SYNAS
response regulator receiver domain-containing protein
Response regulator receiver domain {ECO:0000313|EMBL:ABC75947.1}; TaxID=56780 species="Bacteria; Proteobacteria; Deltaproteobacteria; Syntrophobacterales; Syntrophaceae; Syntrophus.;" source="Syntroph
13_1_40cm_4_scaffold_4722_3
unknown

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comp(2042..3265)
DNA (1224bp) protein (408aa)

This feature has no annotations

13_1_40cm_4_scaffold_4722_4
Rhodothermus marinus, Rhodothermus, Bacteroidetes Order II. Incertae sedis, Bacteroidetes, Bacteria

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3454..4545
DNA (1092bp) protein (364aa)
Efflux transporter, RND family, MFP subunit n=1 Tax=Rhodothermus marinus (strain ATCC 43812 / DSM 4252 / R-10) RepID=D0MIL9_RHOM4
RND family efflux transporter MFP subunit
Efflux transporter, RND family, MFP subunit {ECO:0000313|EMBL:ACY48327.1}; Flags: Precursor;; TaxID=518766 species="Bacteria; Bacteroidetes; Bacteroidetes Order II. Incertae sedis; Rhodothermaceae; Rh
13_1_40cm_4_scaffold_4722_5
Rhodothermus marinus, Rhodothermus, Bacteroidetes Order II. Incertae sedis, Bacteroidetes, Bacteria

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4547..5764
DNA (1218bp) protein (406aa)
Uncharacterized protein n=1 Tax=Rhodothermus marinus (strain ATCC 43812 / DSM 4252 / R-10) RepID=D0MIM0_RHOM4
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACY48328.1}; TaxID=518766 species="Bacteria; Bacteroidetes; Bacteroidetes Order II. Incertae sedis; Rhodothermaceae; Rhodothermus.;" source="Rhodothermus mari
13_1_40cm_4_scaffold_4722_6
Rhodothermus marinus, Rhodothermus, Bacteroidetes Order II. Incertae sedis, Bacteroidetes, Bacteria

Not on your lists

5764..7014
DNA (1251bp) protein (417aa)
Uncharacterized protein n=1 Tax=Rhodothermus marinus SG0.5JP17-172 RepID=G2SHV5_RHOMR
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEN73421.1}; TaxID=762570 species="Bacteria; Bacteroidetes; Bacteroidetes Order II. Incertae sedis; Rhodothermaceae; Rhodothermus.;" source="Rhodothermus mari
13_1_40cm_4_scaffold_4722_7
RBG_16_Deltaproteobacteria_54_11_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7062..8756
DNA (1695bp) protein (565aa)
AMP-dependent synthetase and ligase; K01897 long-chain acyl-CoA synthetase [EC:6.2.1.3] Tax=RBG_16_Deltaproteobacteria_54_11_curated
AMP-dependent synthetase and ligase n=1 Tax=Chlorobium ferrooxidans DSM 13031 RepID=Q0YTE4_9CHLB
AMP-dependent synthetase and ligase
13_1_40cm_4_scaffold_4722_8
Flavihumibacter solisilvae, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(8872..9738)
DNA (867bp) protein (289aa)
hypothetical protein n=1 Tax=Acidobacteriaceae bacterium KBS 89 RepID=UPI00035E6ED2
Short-chain dehydrogenase {ECO:0000313|EMBL:KIC94869.1}; TaxID=1349421 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibac
3-oxoacyl-(acyl-carrier-protein) reductase
13_1_40cm_4_scaffold_4722_9
Sinorhizobium fredii, Sinorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9749..10222)
DNA (474bp) protein (158aa)
Plasmid pSfHH103e complete sequence n=1 Tax=Rhizobium fredii (strain HH103) RepID=G9AJP8_RHIFH
Germin-like protein subfamily 2 member 2 Flags: Precursor
Uncharacterized protein {ECO:0000313|EMBL:CCF01280.1}; TaxID=1117943 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Sinorhizobium.;" so
13_1_40cm_4_scaffold_4722_10
Caulobacter segnis, Caulobacter, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(10422..10763)
DNA (342bp) protein (114aa)
Putative uncharacterized protein n=1 Tax=Caulobacter segnis (strain ATCC 21756 / DSM 7131 / JCM 7823 / NBRC 15250 / LMG 17158 / TK0059) RepID=D5VG10_CAUST
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADG10013.1}; TaxID=509190 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Caulobacter.;" source="Caulobacter segnis
13_1_40cm_4_scaffold_4722_11
CG_Deferri_01, Deferribacterales, Deferribacteres, Deferribacteres, Bacteria

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11214..14129
DNA (2916bp) protein (972aa)
hypothetical protein n=1 Tax=SAR406 cluster bacterium SCGC AB-629-J13 RepID=UPI0003822517
hypothetical protein Tax=CG_Deferri_01
hypothetical protein
13_1_40cm_4_scaffold_4722_12
R_Gemmatimonadetes_71_11, Gemmatimonadetes, Bacteria

Not on your lists

14383..14664
DNA (282bp) protein (94aa)
4Fe-4S ferredoxin-type protein n=2 Tax=Sutterella RepID=R5PYS8_9BURK
ferredoxin-type protein napG; K02573 ferredoxin-type protein NapG Tax=RIFCSPLOWO2_02_FULL_Gemmatimonadetes_71_11_curated
quinol dehydrogenase
13_1_40cm_4_scaffold_4722_13
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

14750..15196
DNA (447bp) protein (149aa)
Cupin domain-containing protein n=1 Tax=Myxococcus stipitatus (strain DSM 14675 / JCM 12634 / Mx s8) RepID=L7UH35_MYXSD
cupin domain-containing protein Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
cupin domain-containing protein
13_1_40cm_4_scaffold_4722_14
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

Not on your lists

15198..16193
DNA (996bp) protein (332aa)
glucose-1-phosphate thymidylyltransferase (EC:2.7.7.24); K00973 glucose-1-phosphate thymidylyltransferase [EC:2.7.7.24] Tax=RBG_16_Gemmatimonadetes_66_8_curated
Glucose-1-phosphate thymidylyltransferase n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1ABC1_GEMAT
Nucleotidyl transferase
13_1_40cm_4_scaffold_4722_15
RBG_16_Acidobacteria_70_10_curated, Acidobacteria, Bacteria

Not on your lists

16213..16719
DNA (507bp) protein (169aa)
hypothetical protein Tax=RBG_16_Acidobacteria_70_10_curated
Uncharacterized protein id=3746620 bin=GWA2_Ignavibacteria_55_11 species=RBG1 genus=RBG1 taxon_order=RBG1 taxon_class=RBG1 phylum=Zixibacteria tax=GWA2_Ignavibacteria_55_11 organism_group=Ignavibacteria organism_desc=Closely related to GWC2 genome
hypothetical protein
13_1_40cm_4_scaffold_4722_16
Herbaspirillum sp. TSA66, Herbaspirillum, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16821..17471
DNA (651bp) protein (217aa)
hypothetical protein n=1 Tax=Herbaspirillum sp. JC206 RepID=UPI0002E19934
TetR family transcriptional regulator {ECO:0000313|EMBL:KIF81779.1}; TaxID=709839 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Oxalobacteraceae; Herbaspirillum.;" source="He
Transcriptional regulator
13_1_40cm_4_scaffold_4722_17
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

Not on your lists

17452..18822
DNA (1371bp) protein (457aa)
Outer membrane efflux protein n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A5R3_GEMAT
outer membrane efflux protein
Outer membrane efflux protein {ECO:0000313|EMBL:AHG89974.1}; TaxID=861299 species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.;"
13_1_40cm_4_scaffold_4722_18
RIFCSPLOWO2_12_FULL_Acidobacteria_60_22_curated, Acidobacteria, Bacteria

Not on your lists

19493..19864
DNA (372bp) protein (124aa)
Secretion protein HlyD family protein n=1 Tax=Geobacter sp. (strain M18) RepID=E8WPU5_GEOS8
secretion protein HlyD family protein; K03543 multidrug resistance protein A Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_60_22_curated
secretion protein HlyD family protein
13_1_40cm_4_scaffold_4722_19
Gemmatimonas aurantiaca, Gemmatimonas, Gemmatimonadales, Gemmatimonadetes, Gemmatimonadetes, Bacteria

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19872..21452
DNA (1581bp) protein (527aa)
Multidrug resistance protein n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A5R1_GEMAT
multidrug resistance protein
Multidrug resistance protein {ECO:0000313|EMBL:BAH37571.1}; TaxID=379066 species="Bacteria; Gemmatimonadetes; Gemmatimonadales; Gemmatimonadaceae; Gemmatimonas.;" source="Gemmatimonas aurantiaca (stra
13_1_40cm_4_scaffold_4722_20
Cystobacter violaceus, Cystobacter, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

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21512..21991
DNA (480bp) protein (160aa)
Peroxiredoxin n=1 Tax=Oscillatoria acuminata PCC 6304 RepID=K9TKC1_9CYAN
Alkyl hydroperoxide reductase {ECO:0000313|EMBL:KFA90523.1}; TaxID=1406225 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Cystobacterineae; Cystobacteraceae; Cystobacter.;" sour
peroxiredoxin
13_1_40cm_4_scaffold_4722_21
unknown

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comp(21988..22191)
DNA (204bp) protein (68aa)

This feature has no annotations

13_1_40cm_4_scaffold_4722_22
RLO_Verrucomicrobia_64_8, Opitutae, Verrucomicrobia, Bacteria

Not on your lists

22208..22528
DNA (321bp) protein (107aa)
protein of unknown function DUF820
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_Verrucomicrobia_64_8_curated
13_1_40cm_4_scaffold_4722_23
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

Not on your lists

comp(22541..23752)
DNA (1212bp) protein (404aa)
hypothetical protein n=1 Tax=Balneola vulgaris RepID=UPI000370FF24
peptidase M20
Peptidase M20 {ECO:0000313|EMBL:AHG91478.1}; TaxID=861299 species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.;"
13_1_40cm_4_scaffold_4722_24
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

Not on your lists

23790..25037
DNA (1248bp) protein (416aa)
2-isopropylmalate synthase (EC:2.3.3.13)
2-isopropylmalate synthase n=1 Tax=Sorangium cellulosum (strain So ce56) RepID=A9FMN1_SORC5 id=5224560 bin=16ft_combo_ws3_JS1 species=Sorangium cellulosum genus=Sorangium taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
2-isopropylmalate synthase Tax=RBG_16_Gemmatimonadetes_66_8_curated
13_1_40cm_4_scaffold_4722_25
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

Not on your lists

24994..26592
DNA (1599bp) protein (533aa)
Uncharacterized protein n=1 Tax=Natranaerobius thermophilus (strain ATCC BAA-1301 / DSM 18059 / JW/NM-WN-LF) RepID=B2A7Y2_NATTJ
hypothetical protein Tax=RBG_16_Gemmatimonadetes_66_8_curated
hypothetical protein
13_1_40cm_4_scaffold_4722_26
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

Not on your lists

26585..27796
DNA (1212bp) protein (404aa)
Major facilitator family transporter Tax=RBG_16_Gemmatimonadetes_66_8_curated
Membrane protein, major facilitator superfamily id=4683444 bin=GWC2_Nitrospirae_57_13 species=Geobacter sulfurreducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Nitrospirae_57_13 organism_group=Nitrospirae organism_desc=Same as C1_57_7 and D2_57_8
major facilitator superfamily MFS_1
13_1_40cm_4_scaffold_4722_27
Rivularia sp. PCC 7116, Rivularia, Nostocales, Cyanobacteria, Bacteria

Not on your lists

27878..28321
DNA (444bp) protein (148aa)
Putative translation initiation inhibitor, yjgF family n=1 Tax=Rivularia sp. PCC 7116 RepID=K9RHH0_9CYAN
putative translation initiation inhibitor, yjgF family
Putative translation initiation inhibitor, yjgF family {ECO:0000313|EMBL:AFY56903.1}; Flags: Precursor;; TaxID=373994 species="Bacteria; Cyanobacteria; Nostocales; Rivulariaceae; Rivularia.;" source="
13_1_40cm_4_scaffold_4722_28
RIFCSPLOWO2_12_FULL_Acidobacteria_60_22_curated, Acidobacteria, Bacteria

Not on your lists

comp(28338..28919)
DNA (582bp) protein (194aa)
OmpA/MotB domain protein n=1 Tax=Pedobacter saltans (strain ATCC 51119 / DSM 12145 / JCM 21818 / LMG 10337 / NBRC 100064 / NCIMB 13643) RepID=F0SBI8_PEDSD
peptidase M36, fungalysin Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_60_22_curated
OmpA/MotB domain-containing protein
Displaying 28 items

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