ggKbase home page

13_1_40cm_4_scaffold_476

Search features with annotation key words

Displaying items 1-30 of 34 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_40cm_4_scaffold_476_1
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

1..1542
DNA (1542bp) protein (514aa)
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Putative uncharacterized protein id=3708972 bin=GWA2_Methylomirabilis_73_35 species=Bacillus sp. 2_A_57_CT2 genus=Bacillus taxon_order=Bacillales taxon_class=Bacilli phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein
13_1_40cm_4_scaffold_476_2
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(1638..2015)
DNA (378bp) protein (126aa)
RNP-1 like RNA-binding protein id=3708973 bin=GWA2_Methylomirabilis_73_35 species=ACD40 genus=ACD40 taxon_order=ACD40 taxon_class=ACD40 phylum=OP11 tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
putative RNA-binding protein RbpA Tax=GWA2_Rokubacteria_73_35_curated
putative RNA-binding protein RbpA
13_1_40cm_4_scaffold_476_3
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(2188..3543)
DNA (1356bp) protein (452aa)
two component sigma54 specific Fis family transcriptional regulator Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Fis family transcriptional regulator; K02481 two-component system, NtrC family, response regulator id=14625085 bin=bin7_NC10_sister species=Carboxydothermus hydrogenoformans genus=Carboxydothermus taxon_order=Thermoanaerobacterales taxon_class=Clostridia phylum=Firmicutes tax=bin7_NC10_sister organism_group=NC10
Fis family transcriptional regulator
13_1_40cm_4_scaffold_476_4
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(3540..4916)
DNA (1377bp) protein (459aa)
multi-sensor signal transduction histidine kinase Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
Multi-sensor hybrid histidine kinase id=5037262 bin=GWA2_Methylomirabilis_73_35 species=Roseiflexus castenholzii genus=Roseiflexus taxon_order=Chloroflexales taxon_class=Chloroflexi phylum=Chloroflexi tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
two-component histidine kinase
13_1_40cm_4_scaffold_476_5
unknown

Not on your lists

5216..6052
DNA (837bp) protein (279aa)

This feature has no annotations

13_1_40cm_4_scaffold_476_6
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(5968..7563)
DNA (1596bp) protein (532aa)
N-acyl-D-amino-acid deacylase; K06015 N-acyl-D-amino-acid deacylase [EC:3.5.1.81] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
N-acyl-D-amino-acid deacylase; K06015 N-acyl-D-amino-acid deacylase [EC:3.5.1.81] id=14625087 bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin7_NC10_sister organism_group=NC10
N-acyl-D-amino-acid deacylase (EC:3.5.1.81)
13_1_40cm_4_scaffold_476_7
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(7575..8882)
DNA (1308bp) protein (436aa)
Amidase Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Amidase id=5037265 bin=GWA2_Methylomirabilis_73_35 species=Sphaerobacter thermophilus genus=Sphaerobacter taxon_order=Sphaerobacterales taxon_class=Thermomicrobia phylum=Chloroflexi tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
Amidase
13_1_40cm_4_scaffold_476_8
unknown

Not on your lists

comp(8869..8976)
DNA (108bp) protein (36aa)

This feature has no annotations

13_1_40cm_4_scaffold_476_9
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(8960..9493)
DNA (534bp) protein (178aa)
shikimate dehydrogenase (EC:1.1.1.25) Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
aroK; shikimate kinase AroK (EC:2.7.1.71)
Shikimate kinase id=4780140 bin=GWA2_Methylomirabilis_73_35 species=Dethiobacter alkaliphilus genus=Dethiobacter taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_40cm_4_scaffold_476_10
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(9573..10298)
DNA (726bp) protein (242aa)
Vitamin B12 dependent methionine synthase activation region Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Vitamin B12 dependent methionine synthase id=4780179 bin=GWA2_Methylomirabilis_73_35 species=Desulfomonile tiedjei genus=Desulfomonile taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
Vitamin B12 dependent methionine synthase, activation domain protein
13_1_40cm_4_scaffold_476_11
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(10295..10684)
DNA (390bp) protein (130aa)
Homocysteine S-methyltransferase id=4780181 bin=GWA2_Methylomirabilis_73_35 species=Caldithrix abyssi genus=Caldithrix taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein Tax=GWA2_Rokubacteria_73_35_curated
homocysteine S-methyltransferase
13_1_40cm_4_scaffold_476_12
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(10684..11160)
DNA (477bp) protein (159aa)
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Homocysteine S-methyltransferase id=4780181 bin=GWA2_Methylomirabilis_73_35 species=Caldithrix abyssi genus=Caldithrix taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
metH; 5-methyltetrahydrofolate--homocysteine methyltransferase
13_1_40cm_4_scaffold_476_13
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(11157..11834)
DNA (678bp) protein (226aa)
methyltransferase cognate corrinoid protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
methyltransferase cognate corrinoid protein id=14625094 bin=bin7_NC10_sister species=Mahella australiensis genus=Mahella taxon_order=Thermoanaerobacterales taxon_class=Clostridia phylum=Firmicutes tax=bin7_NC10_sister organism_group=NC10
methyltransferase cognate corrinoid protein
13_1_40cm_4_scaffold_476_14
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

11867..12631
DNA (765bp) protein (255aa)
beta-lactamase domain-containing protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Putative beta-lactamase-like protein id=4780187 bin=GWA2_Methylomirabilis_73_35 species=Bacteriovorax marinus genus=Bacteriovorax taxon_order=Bdellovibrionales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
beta-lactamase domain-containing protein
13_1_40cm_4_scaffold_476_15
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(12649..13746)
DNA (1098bp) protein (366aa)
ABC transporter-like protein; K02052 putative spermidine/putrescine transport system ATP-binding protein Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
ABC transporter-like protein; K02052 putative spermidine/putrescine transport system ATP-binding protein id=14625100 bin=bin7_NC10_sister species=Syntrophobacter fumaroxidans genus=Syntrophobacter taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=bin7_NC10_sister organism_group=NC10
ABC transporter-like protein
13_1_40cm_4_scaffold_476_16
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(13743..14855)
DNA (1113bp) protein (371aa)
major facilitator transporter Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
major facilitator superfamily transporter id=14625101 bin=bin7_NC10_sister species=Advenella kashmirensis genus=Advenella taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=bin7_NC10_sister organism_group=NC10
major facilitator superfamily transporter
13_1_40cm_4_scaffold_476_17
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(14919..15203)
DNA (285bp) protein (95aa)
alkylhydroperoxidase like protein Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
Alkylhydroperoxidase like protein, AhpD family id=2694168 bin=GWA2_Methylomirabilis_73_35 species=Nitrosococcus halophilus genus=Nitrosococcus taxon_order=Chromatiales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein
13_1_40cm_4_scaffold_476_18
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(15228..15470)
DNA (243bp) protein (81aa)
hypothetical protein id=2694174 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein Tax=GWA2_Rokubacteria_73_35_curated
13_1_40cm_4_scaffold_476_19
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(15496..16410)
DNA (915bp) protein (305aa)
Putative aminopeptidase id=2694177 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Chloracidobacterium thermophilum genus=Candidatus Chloracidobacterium taxon_order=unknown taxon_class=unknown phylum=Acidobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
putative aminopeptidase Tax=GWA2_Rokubacteria_73_35_curated
putative aminopeptidase
13_1_40cm_4_scaffold_476_20
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(16407..17171)
DNA (765bp) protein (255aa)
hypothetical protein AATC3_01647 id=2694182 bin=GWA2_Methylomirabilis_73_35 species=unidentified genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
s-adenosylmethionine transferase Tax=GWA2_Rokubacteria_73_35_curated
putative ubiquinone/menaquinone biosynthesis methyltransferase
13_1_40cm_4_scaffold_476_21
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(17287..17523)
DNA (237bp) protein (79aa)
hypothetical protein id=2694184 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein Tax=GWA2_Rokubacteria_73_35_curated
13_1_40cm_4_scaffold_476_22
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(17530..17760)
DNA (231bp) protein (77aa)
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
hypothetical protein id=2694187 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_40cm_4_scaffold_476_23
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

17787..18329
DNA (543bp) protein (181aa)
NUDIX hydrolase Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
NUDIX hydrolase id=2694190 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
NUDIX hydrolase
13_1_40cm_4_scaffold_476_24
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(18338..19456)
DNA (1119bp) protein (373aa)
Cys/Met metabolism pyridoxal-phosphate-dependent protein; K01739 cystathionine gamma-synthase [EC:2.5.1.48] Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
Cys/Met metabolism pyridoxal-phosphate-dependent protein n=1 Tax=Marinithermus hydrothermalis (strain DSM 14884 / JCM 11576 / T1) RepID=F2NNU9_MARHT
Cys/Met metabolism pyridoxal-phosphate-dependent protein
13_1_40cm_4_scaffold_476_25
CSP1_6_Rokubacteria, Rokubacteria, Bacteria

Not on your lists

comp(19534..20298)
DNA (765bp) protein (255aa)
2,5-dichloro-2,5-cyclohexadiene-1,4-diol dehydrogenase (EC:1.1.1.-) id=14625119 bin=bin7_NC10_sister species=Thermomicrobium roseum genus=Thermomicrobium taxon_order=Thermomicrobiales taxon_class=Thermomicrobia phylum=Chloroflexi tax=bin7_NC10_sister organism_group=NC10
2,5-dichloro-2,5-cyclohexadiene-1,4-diol dehydrogenase (EC:1.1.1.-) Tax=CSP1_6_Rokubacteria
short-chain dehydrogenase/reductase SDR
13_1_40cm_4_scaffold_476_26
CSP1_6_Rokubacteria, Rokubacteria, Bacteria

Not on your lists

comp(20306..21679)
DNA (1374bp) protein (458aa)
glutamine synthetase; K01915 glutamine synthetase [EC:6.3.1.2] id=14625120 bin=bin7_NC10_sister species=Parvibaculum lavamentivorans genus=Parvibaculum taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=bin7_NC10_sister organism_group=NC10
glutamine synthetase; K01915 glutamine synthetase [EC:6.3.1.2] Tax=CSP1_6_Rokubacteria
glutamine synthetase
13_1_40cm_4_scaffold_476_27
Chloroflexus aurantiacus, Chloroflexus, Chloroflexales, Chloroflexia, Chloroflexi, Bacteria

Not on your lists

21734..23062
DNA (1329bp) protein (443aa)
Permease of the major facilitator superfamily-like protein n=2 Tax=Chloroflexus RepID=A9WGR7_CHLAA
major facilitator superfamily permease
Permease of the major facilitator superfamily-like protein {ECO:0000313|EMBL:ABY36233.1}; TaxID=324602 species="Bacteria; Chloroflexi; Chloroflexia; Chloroflexales; Chloroflexineae; Chloroflexaceae; C
13_1_40cm_4_scaffold_476_28
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(23076..24260)
DNA (1185bp) protein (395aa)
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
hypothetical protein id=14625121 bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin7_NC10_sister organism_group=NC10
hypothetical protein
13_1_40cm_4_scaffold_476_29
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(24270..24713)
DNA (444bp) protein (148aa)
ribonuclease III (EC:3.1.26.3); K03685 ribonuclease III [EC:3.1.26.3] Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
rnc; ribonuclease III; K03685 ribonuclease III [EC:3.1.26.3] id=14625122 bin=bin7_NC10_sister species=Corallococcus coralloides genus=Corallococcus taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=bin7_NC10_sister organism_group=NC10
ribonuclease III
13_1_40cm_4_scaffold_476_30
R_Rokubacteria_69_13, Rokubacteria, Bacteria

Not on your lists

comp(24714..25952)
DNA (1239bp) protein (413aa)
3-oxoacyl-(acyl-carrier-protein) synthase II (EC:2.3.1.41); K09458 3-oxoacyl-[acyl-carrier-protein] synthase II [EC:2.3.1.179] Tax=RIFCSPHIGHO2_02_FULL_Rokubacteria_69_13_curated
3-oxoacyl-[acyl-carrier-protein] synthase 2 id=2638134 bin=GWF2_Methylomirabilis_70_14 species=Desmospora sp. 8437 genus=Desmospora taxon_order=Bacillales taxon_class=Bacilli phylum=Firmicutes tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
3-oxoacyl-(acyl-carrier-protein) synthase 2
Displaying items 1-30 of 34 in total

View Taxonomy