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13_1_40cm_4_scaffold_4956

Search features with annotation key words

Displaying 28 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_40cm_4_scaffold_4956_1
R_NC10_66_22, NC10, Bacteria

Not on your lists

comp(2..379)
DNA (378bp) protein (126aa)
ABC transporter permease; K11071 spermidine/putrescine transport system permease protein Tax=RIFCSPLOWO2_02_FULL_NC10_66_22_curated
Binding-protein-dependent transport systems inner membrane component id=3669834 bin=GWC2_Chloroflexi_49_37 species=Sphaerobacter thermophilus genus=Sphaerobacter taxon_order=Sphaerobacterales taxon_class=Thermomicrobia phylum=Chloroflexi tax=GWC2_Chloroflexi_49_37 organism_group=Chloroflexi organism_desc=Good +; Candidate for curation
binding-protein-dependent transport system inner membrane protein
13_1_40cm_4_scaffold_4956_2
Sphaerobacter thermophilus, Sphaerobacter, Sphaerobacterales, Sphaerobacteridae, Chloroflexi, Bacteria

Not on your lists

comp(527..1552)
DNA (1026bp) protein (342aa)
Spermidine/putrescine import ATP-binding protein PotA {ECO:0000256|HAMAP-Rule:MF_01726}; EC=3.6.3.31 {ECO:0000256|HAMAP-Rule:MF_01726};; TaxID=479434 species="Bacteria; Chloroflexi; Sphaerobacteridae;
Spermidine/putrescine ABC transporter ATPase subunit n=1 Tax=Sphaerobacter thermophilus (strain DSM 20745 / S 6022) RepID=D1C394_SPHTD
spermidine/putrescine ABC transporter ATPase
13_1_40cm_4_scaffold_4956_3
Candidatus Entotheonella sp. TSY1, Candidatus Entotheonella, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1560..2312)
DNA (753bp) protein (251aa)
3-ketoacyl-ACP reductase (EC:1.1.1.100)
hypothetical protein n=1 Tax=Roseomonas sp. B5 RepID=UPI000382B872
Uncharacterized protein {ECO:0000313|EMBL:ETW99868.1}; TaxID=1429438 species="Bacteria; Proteobacteria; Deltaproteobacteria; Candidatus Entotheonella.;" source="Candidatus Entotheonella sp. TSY1.;"
13_1_40cm_4_scaffold_4956_4
Candidatus Koribacter versatilis, Candidatus Koribacter, Acidobacteriales, Acidobacteriia, Acidobacteria, Bacteria

Not on your lists

comp(2371..2721)
DNA (351bp) protein (117aa)
Putative uncharacterized protein n=1 Tax=Koribacter versatilis (strain Ellin345) RepID=Q1IQA1_KORVE
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABF40949.1}; TaxID=204669 species="Bacteria; Acidobacteria; Acidobacteriales; Acidobacteriaceae; Candidatus Koribacter.;" source="Koribacter versatilis (strai
13_1_40cm_4_scaffold_4956_5
unknown

Not on your lists

comp(2718..3005)
DNA (288bp) protein (96aa)

This feature has no annotations

13_1_40cm_4_scaffold_4956_6
R_Alphaproteobacteria_66_14, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3089..4006
DNA (918bp) protein (306aa)
Uncharacterized protein n=1 Tax=Actinomadura madurae LIID-AJ290 RepID=U2PR48_9ACTO
LysR family transcriptional regulator Tax=RIFCSPHIGHO2_12_FULL_Alphaproteobacteria_66_14_curated
putative LysR, transcriptional regulator
13_1_40cm_4_scaffold_4956_7
CG_CP02_01, CG_CP02, Bacteria

Not on your lists

4011..4673
DNA (663bp) protein (221aa)
Ribonuclease HI Tax=CG_CP02_01
13_1_40cm_4_scaffold_4956_8
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(4674..5687)
DNA (1014bp) protein (338aa)
Luciferase-like monooxygenase id=2589433 bin=GWA2_Methylomirabilis_73_35 species=Halalkalicoccus jeotgali genus=Halalkalicoccus taxon_order=Halobacteriales taxon_class=Halobacteria phylum=Euryarchaeota tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
Luciferase-like monooxygenase Tax=GWA2_Rokubacteria_73_35_curated
luciferase-like protein
13_1_40cm_4_scaffold_4956_9
R_Rokubacteria_68_19, Rokubacteria, Bacteria

Not on your lists

5855..7255
DNA (1401bp) protein (467aa)
AraC family transcriptional regulator id=14626524 bin=bin7_NC10_sister species=Methyloversatilis universalis genus=Methyloversatilis taxon_order=Rhodocyclales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=bin7_NC10_sister organism_group=NC10
AraC family transcriptional regulator Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_68_19_curated
AraC family transcriptional regulator
13_1_40cm_4_scaffold_4956_10
RIFCSPLOWO2_12_FULL_Betaproteobacteria_65_14_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7712..8260
DNA (549bp) protein (183aa)
gluconolactonase; K01053 gluconolactonase [EC:3.1.1.17] Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_65_14_curated
Gluconolactonase (EC:3.1.1.17)
Gluconolactonase n=1 Tax=Achromobacter xylosoxidans NH44784-1996 RepID=R4XYZ8_ALCXX
13_1_40cm_4_scaffold_4956_11
unknown

Not on your lists

comp(8271..8468)
DNA (198bp) protein (66aa)

This feature has no annotations

13_1_40cm_4_scaffold_4956_12
RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_58_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8465..9439)
DNA (975bp) protein (325aa)
NHL repeat-containing protein Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_58_curated
hypothetical protein SpalD1_28839 id=3396029 bin=GWC2_Syntrophus__56_31 species=unidentified genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Syntrophus__56_31 organism_group=Deltaproteobacteria organism_desc=Good +
hypothetical protein
13_1_40cm_4_scaffold_4956_13
GWC2_Rokubacteria_70_16_curated, Rokubacteria, Bacteria

Not on your lists

comp(9460..10380)
DNA (921bp) protein (307aa)
hypothetical protein; K01652 acetolactate synthase I/II/III large subunit [EC:2.2.1.6] Tax=GWC2_Rokubacteria_70_16_curated
Acetolactate synthase id=4736650 bin=GWC2_Methylomirabilis_70_16 species=Frankia sp. CN3 genus=Frankia taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
hypothetical protein
13_1_40cm_4_scaffold_4956_14
unknown

Not on your lists

10472..11224
DNA (753bp) protein (251aa)

This feature has no annotations

13_1_40cm_4_scaffold_4956_15
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

comp(11130..11840)
DNA (711bp) protein (237aa)
C-type lectin domain protein n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XMI4_9BACT
C-type lectin domain protein {ECO:0000313|EMBL:EEF59026.1}; Flags: Precursor;; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Ped
13_1_40cm_4_scaffold_4956_16
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

11996..12481
DNA (486bp) protein (162aa)
Competence/damage-inducible protein cinA id=4829158 bin=GWC2_Methylomirabilis_70_16 species=unknown genus=Bradyrhizobium taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
putative competence-damaged protein, CinA like protein Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
competence/damage-inducible protein cinA
13_1_40cm_4_scaffold_4956_17
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

Not on your lists

12491..13420
DNA (930bp) protein (310aa)
3-hydroxyisobutyrate dehydrogenase (EC:1.1.1.31); K00020 3-hydroxyisobutyrate dehydrogenase [EC:1.1.1.31] Tax=GWA2_Rokubacteria_70_23_curated
3-hydroxyisobutyrate dehydrogenase (EC:1.1.1.31)
3-hydroxyisobutyrate dehydrogenase id=3352297 bin=GWA2_Methylomirabilis_73_35 species=Roseomonas cervicalis genus=Roseomonas taxon_order=Rhodospirillales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_40cm_4_scaffold_4956_18
GWC2_Syntrophus_56_31_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13424..14272
DNA (849bp) protein (283aa)
id=4409653 bin=GWC2_Syntrophus__56_31 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Syntrophus__56_31 organism_group=Deltaproteobacteria organism_desc=Good +
id=4409653 Tax=GWC2_Syntrophus_56_31_curated
13_1_40cm_4_scaffold_4956_19
RLO_Betaproteobacteria_68_20, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14273..15079)
DNA (807bp) protein (269aa)
hypothetical protein n=1 Tax=Thioalkalivibrio RepID=UPI0003718ADC
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_68_20_curated
13_1_40cm_4_scaffold_4956_20
R_Acidobacteria_59_13, Acidobacteria, Bacteria

Not on your lists

15257..16330
DNA (1074bp) protein (358aa)
hypothetical protein n=1 Tax=Chelatococcus sp. GW1 RepID=UPI00030F5E0B
family 1 extracellular solute-binding protein
twin-arginine translocation pathway signal Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_59_13_curated
13_1_40cm_4_scaffold_4956_21
Methylobacterium nodulans, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16706..17110
DNA (405bp) protein (135aa)
hypothetical protein n=1 Tax=Chelatococcus sp. GW1 RepID=UPI00031DB0D5
binding-protein-dependent transport systems inner membrane component
Binding-protein-dependent transport systems inner membrane component {ECO:0000313|EMBL:ACL62595.1}; Flags: Precursor;; TaxID=460265 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales;
13_1_40cm_4_scaffold_4956_22
unknown

Not on your lists

comp(17074..17418)
DNA (345bp) protein (115aa)

This feature has no annotations

13_1_40cm_4_scaffold_4956_23
Inquilinus limosus, Inquilinus, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17926..18924
DNA (999bp) protein (333aa)
Polyamine-transporting ATPase {ECO:0000256|SAAS:SAAS00083160}; EC=3.6.3.31 {ECO:0000256|SAAS:SAAS00083160};; TaxID=1398085 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rho
Spermidine/putrescine import ATP-binding protein PotA n=1 Tax=Rubrobacter xylanophilus (strain DSM 9941 / NBRC 16129) RepID=POTA_RUBXD
spermidine/putrescine ABC transporter ATP-binding subunit
13_1_40cm_4_scaffold_4956_24
Frankia sp. EUN1f, Frankia, Frankiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(19087..20481)
DNA (1395bp) protein (465aa)
S-adenosylhomocysteine deaminase n=1 Tax=Frankia sp. CN3 RepID=G6HGK9_9ACTO
Amidohydrolase {ECO:0000313|EMBL:EFC82961.1}; TaxID=102897 species="Bacteria; Actinobacteria; Frankiales; Frankiaceae; Frankia.;" source="Frankia sp. EUN1f.;"
amidohydrolase
13_1_40cm_4_scaffold_4956_25
R_Rokubacteria_68_19, Rokubacteria, Bacteria

Not on your lists

20536..21621
DNA (1086bp) protein (362aa)
periplasmic component of the Tol biopolymer transport system Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_68_19_curated
periplasmic component of the Tol biopolymer transport system id=14626953 bin=bin7_NC10_sister tax=bin7_NC10_sister organism_group=NC10
periplasmic component of the Tol biopolymer transport system
13_1_40cm_4_scaffold_4956_26
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

21657..22082
DNA (426bp) protein (142aa)
histidine kinase; K02482 two-component system, NtrC family, sensor kinase [EC:2.7.13.3] Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
Histidine kinase id=2285108 bin=GWA2_Methylomirabilis_73_35 species=Aromatoleum aromaticum genus=Aromatoleum taxon_order=Rhodocyclales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
atoS9; sensory box histidine kinase/response regulator
13_1_40cm_4_scaffold_4956_27
Delftia acidovorans, Delftia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22073..23725)
DNA (1653bp) protein (551aa)
Uncharacterized protein n=1 Tax=Delftia acidovorans CCUG 274B RepID=S2WB59_DELAC
Uncharacterized protein {ECO:0000313|EMBL:EPD35425.1}; TaxID=883101 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Delftia.;" source="Delftia acidovorans CCUG
hypothetical protein
13_1_40cm_4_scaffold_4956_28
RHI_Planctomycetes_52_36, Planctomycetes, Bacteria

Not on your lists

23807..24178
DNA (372bp) protein (124aa)
Histidine kinase id=4058803 bin=GWC2_Methylomirabilis_70_24 species=Aromatoleum aromaticum genus=Aromatoleum taxon_order=Rhodocyclales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
two component, sigma54 specific, transcriptional regulator, Fis family; K13599 two-component system, NtrC family, nitrogen regulation response regulator NtrX Tax=RIFCSPHIGHO2_12_FULL_Planctomycetes_52
DNA-binding response regulator
Displaying 28 items

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