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13_1_40cm_4_scaffold_498

Search features with annotation key words

Displaying items 1-30 of 34 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_40cm_4_scaffold_498_1
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

2..109
DNA (108bp) protein (36aa)
putative PSP1-like protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
13_1_40cm_4_scaffold_498_2
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists


106..1992
DNA (1887bp) protein (629aa)
methionyl-tRNA synthetase (EC:6.1.1.10); K01874 methionyl-tRNA synthetase [EC:6.1.1.10] Tax=GWA2_Rokubacteria_73_35_curated
methionyl-tRNA synthetase (EC:6.1.1.10)
Methionine--tRNA ligase id=4657185 bin=GWA2_Methylomirabilis_73_35 species=Marinithermus hydrothermalis genus=Marinithermus taxon_order=Thermales taxon_class=Deinococci phylum=Deinococcus-Thermus tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_40cm_4_scaffold_498_3
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

2000..2293
DNA (294bp) protein (98aa)
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
hypothetical protein id=4657184 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_40cm_4_scaffold_498_4
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

2290..3279
DNA (990bp) protein (330aa)
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Uncharacterized protein id=4657183 bin=GWA2_Methylomirabilis_73_35 species=Thauera linaloolentis genus=Thauera taxon_order=Rhodocyclales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein
13_1_40cm_4_scaffold_498_5
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

3308..3718
DNA (411bp) protein (137aa)
acT domain-containing protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
acT domain-containing protein id=14429420 bin=bin3_NC10 species=RBG1 genus=RBG1 taxon_order=RBG1 taxon_class=RBG1 phylum=Zixibacteria tax=bin3_NC10 organism_group=NC10
acT domain-containing protein
13_1_40cm_4_scaffold_498_6
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

3804..4586
DNA (783bp) protein (261aa)
TatD family deoxyribonuclease; K03424 TatD DNase family protein [EC:3.1.21.-] Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
Magnesium-dependent deoxyribonuclease, TatD family, and radical SAM domain iron-sulfur oxidoreductase id=3639821 bin=GWC2_Methylomirabilis_70_24 species=Geobacter sulfurreducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
hydrolase TatD
13_1_40cm_4_scaffold_498_7
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

4583..5521
DNA (939bp) protein (313aa)
aminopeptidase Y (EC:3.4.11.15)
Peptidase id=4029897 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
Peptidase Tax=GWA2_Rokubacteria_73_35_curated
13_1_40cm_4_scaffold_498_8
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists

comp(5529..5816)
DNA (288bp) protein (96aa)
id=14628098 Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
hypothetical protein id=4029901 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_40cm_4_scaffold_498_9
unknown

Not on your lists

5878..5970
DNA (93bp) protein (31aa)

This feature has no annotations

13_1_40cm_4_scaffold_498_10
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

5990..6886
DNA (897bp) protein (299aa)
hypothetical protein
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
hypothetical protein id=4029904 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_40cm_4_scaffold_498_11
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

7017..7577
DNA (561bp) protein (187aa)
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
Putative intramembrane serine protease id=2322384 bin=GWA2_Methylomirabilis_73_35 species=Bacillus halodurans genus=Bacillus taxon_order=Bacillales taxon_class=Bacilli phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
rhomboid family protein
13_1_40cm_4_scaffold_498_12
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(7783..8661)
DNA (879bp) protein (293aa)
peptidase S58, DmpA Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
L-aminopeptidase/D-esterase id=4429850 bin=GWA2_Methylomirabilis_73_35 species=Burkholderiales bacterium JOSHI_001 genus=unknown taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein
13_1_40cm_4_scaffold_498_13
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(8730..9725)
DNA (996bp) protein (332aa)
id=4698146 Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
id=4698146 bin=GWC2_Methylomirabilis_70_16 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
13_1_40cm_4_scaffold_498_14
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(9722..10243)
DNA (522bp) protein (174aa)
hypothetical protein id=4429854 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein Tax=GWA2_Rokubacteria_73_35_curated
13_1_40cm_4_scaffold_498_15
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists

10289..10600
DNA (312bp) protein (104aa)
id=14625964 Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
id=14625964 bin=bin7_NC10_sister tax=bin7_NC10_sister organism_group=NC10
13_1_40cm_4_scaffold_498_16
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(10539..11315)
DNA (777bp) protein (259aa)
histidinol-phosphate aminotransferase; K00817 histidinol-phosphate aminotransferase [EC:2.6.1.9] Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
Histidinol-phosphate aminotransferase id=4429857 bin=GWA2_Methylomirabilis_73_35 species=Ammonifex degensii genus=Ammonifex taxon_order=Thermoanaerobacterales taxon_class=Clostridia phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
histidinol-phosphate aminotransferase
13_1_40cm_4_scaffold_498_17
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

12598..16989
DNA (4392bp) protein (1464aa)
lytic transglycosylase, catalytic; K08309 soluble lytic murein transglycosylase [EC:3.2.1.-] Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
Lytic transglycosylase id=4793525 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=Anaeromyxobacter taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
glnD; nitrogen regulatory protein P-II uridylyltransferase, GlnD
13_1_40cm_4_scaffold_498_18
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

Not on your lists

17051..18076
DNA (1026bp) protein (342aa)
Luciferase-like monooxygenase id=4412867 bin=GWF2_Methylomirabilis_70_14 species=Rhodococcus triatomae genus=Rhodococcus taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
luciferase-like monooxygenase Tax=GWA2_Rokubacteria_70_23_curated
luciferase family protein
13_1_40cm_4_scaffold_498_19
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(18256..18951)
DNA (696bp) protein (232aa)
Aminotransferase, class I and II Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Aminotransferase, class I and II id=4815551 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_40cm_4_scaffold_498_20
R_NC10_66_22, NC10, Bacteria

Not on your lists

comp(19088..19720)
DNA (633bp) protein (211aa)
tesA; TAP complex multifunctional esterase (EC:3.1.1.5 3.1.2.-); K10804 acyl-CoA thioesterase I [EC:3.1.2.- 3.1.1.5] Tax=RIFCSPLOWO2_02_FULL_NC10_66_22_curated
tesA; multifunctional: acyl-CoA thioesterase I; protease I; lysophospholipaseL(I) (EC:3.1.2.- 3.1.1.5)
GDSL-like Lipase/Acylhydrolase id=4815550 bin=GWA2_Methylomirabilis_73_35 species=Magnetospirillum gryphiswaldense genus=Magnetospirillum taxon_order=Rhodospirillales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_40cm_4_scaffold_498_21
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

19747..20415
DNA (669bp) protein (223aa)
ybbA; ABC transporter ATPase (EC:3.6.3.-)
putative ABC transporter, ATPase component; K02003 putative ABC transport system ATP-binding protein Tax=GWA2_Rokubacteria_73_35_curated
ABC efflux transporter, ATPase subunit id=3112906 bin=GWC2_Methylomirabilis_70_16 species=Candidatus Poribacteria sp. WGA-A3 genus=unknown taxon_order=unknown taxon_class=unknown phylum=Poribacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
13_1_40cm_4_scaffold_498_22
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

20412..22958
DNA (2547bp) protein (849aa)
Putative Uncharacterized ABC-type transport system, permease component YbbP id=4815548 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Nitrospira defluvii genus=Nitrospira taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
putative ABC transporter permease YbbP; K02004 putative ABC transport system permease protein Tax=GWA2_Rokubacteria_73_35_curated
putative ABC transporter permease YbbP
13_1_40cm_4_scaffold_498_23
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

22995..23366
DNA (372bp) protein (124aa)
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
glyoxalase/bleomycin resistance protein/dioxygenase id=14626134 bin=bin7_NC10_sister species=Pandoraea sp. SD6-2 genus=Pandoraea taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=bin7_NC10_sister organism_group=NC10
hypothetical protein
13_1_40cm_4_scaffold_498_24
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

Not on your lists

23374..23766
DNA (393bp) protein (131aa)
id=4771416 Tax=GWA2_Rokubacteria_70_23_curated
id=14626178 bin=bin7_NC10_sister tax=bin7_NC10_sister organism_group=NC10
13_1_40cm_4_scaffold_498_25
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(23815..25056)
DNA (1242bp) protein (414aa)
biotin carboxylase-like Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
biotin carboxylase-like id=14626151 bin=bin7_NC10_sister species=Anaeromyxobacter dehalogenans genus=Anaeromyxobacter taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=bin7_NC10_sister organism_group=NC10
biotin carboxylase-like
13_1_40cm_4_scaffold_498_26
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(25088..25369)
DNA (282bp) protein (94aa)
nitrogen-fixing NifU domain-containing protein; K07400 Fe/S biogenesis protein NfuA Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
Nitrogen fixation protein NifU id=3597763 bin=GWC2_Methylomirabilis_70_16 species=uncultured Acidobacteria bacterium genus=unknown taxon_order=unknown taxon_class=unknown phylum=Acidobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
nitrogen-fixing NifU domain-containing protein
13_1_40cm_4_scaffold_498_27
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(25441..26817)
DNA (1377bp) protein (459aa)
Radical SAM domain-containing protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Radical SAM domain protein id=3597633 bin=GWC2_Methylomirabilis_70_16 species=Thermomicrobium roseum genus=Thermomicrobium taxon_order=Thermomicrobiales taxon_class=Thermomicrobia phylum=Chloroflexi tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
radical SAM protein
13_1_40cm_4_scaffold_498_28
R_Rokubacteria_68_19, Rokubacteria, Bacteria

Not on your lists

26886..27092
DNA (207bp) protein (69aa)
Zinc finger, CDGSH-type id=14625183 bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=Acidobacteriales taxon_class=Acidobacteriia phylum=Acidobacteria tax=bin7_NC10_sister organism_group=NC10
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_68_19_curated
hypothetical protein
13_1_40cm_4_scaffold_498_29
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists

comp(27095..27382)
DNA (288bp) protein (96aa)
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
hypothetical protein id=4539026 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_40cm_4_scaffold_498_30
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

28020..28208
DNA (189bp) protein (63aa)
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
hypothetical protein id=3776760 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
Displaying items 1-30 of 34 in total

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