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13_1_40cm_4_scaffold_5165

Search features with annotation key words

Displaying items 1-30 of 31 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_40cm_4_scaffold_5165_1
RBG_13_Bathyarchaeota_46_16b_curated, Bathyarchaeota, Archaea

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1..756
DNA (756bp) protein (252aa)
sucD; succinyl-CoA synthetase subunit alpha (EC:6.2.1.5); K01902 succinyl-CoA synthetase alpha subunit [EC:6.2.1.5] Tax=RBG_13_Bathyarchaeota_46_16b_curated
Succinyl-CoA ligase [ADP-forming] subunit alpha n=1 Tax=Methanotorris igneus (strain DSM 5666 / JCM 11834 / Kol 5) RepID=F6BCW4_METIK
succinyl-CoA synthetase subunit alpha
13_1_40cm_4_scaffold_5165_2
RBG_16_Archaea_50_20_curated, Archaea

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comp(1818..2630)
DNA (813bp) protein (271aa)
putative ribosomal RNA small subunit methyltransferase A; K02528 16S rRNA (adenine1518-N6/adenine1519-N6)-dimethyltransferase [EC:2.1.1.182] Tax=RBG_16_Archaea_50_20_curated
Probable ribosomal RNA small subunit methyltransferase A n=1 Tax=Thermococcus sp. AM4 RepID=G2M2H2_9EURY
16S rRNA methyltransferase
13_1_40cm_4_scaffold_5165_3
RBG_16_Archaea_50_20_curated, Archaea

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comp(2635..3219)
DNA (585bp) protein (195aa)
Uncharacterized protein n=1 Tax=Ferroglobus placidus (strain DSM 10642 / AEDII12DO) RepID=D3S1Z8_FERPA
DNA-binding protein; K07572 putative nucleotide binding protein Tax=RBG_16_Archaea_50_20_curated
hypothetical protein
13_1_40cm_4_scaffold_5165_4
RBG_16_Archaea_50_20_curated, Archaea

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comp(3368..3697)
DNA (330bp) protein (110aa)
RNA polymerase Rpb4; K03051 DNA-directed RNA polymerase subunit F [EC:2.7.7.6] Tax=RBG_16_Archaea_50_20_curated
hypothetical protein n=1 Tax=unclassified Crenarchaeota (miscellaneous) RepID=UPI000364BA4E
rpb4; RNA polymerase Rpb4
13_1_40cm_4_scaffold_5165_5
RBG_16_Archaea_50_20_curated, Archaea

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comp(3697..3996)
DNA (300bp) protein (100aa)
50S ribosomal protein L21e n=1 Tax=Hyperthermus butylicus (strain DSM 5456 / JCM 9403) RepID=A2BNB3_HYPBU
50S ribosomal protein L21; K02889 large subunit ribosomal protein L21e Tax=RBG_16_Archaea_50_20_curated
50S ribosomal protein L21e
13_1_40cm_4_scaffold_5165_6
RBG_13_Bathyarchaeota_46_16b_curated, Bathyarchaeota, Archaea

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4046..5116
DNA (1071bp) protein (357aa)
methyltransferase-like protein; K07446 tRNA (guanine10-N2)-dimethyltransferase [EC:2.1.1.213] Tax=RBG_13_Bathyarchaeota_46_16b_curated
Methyltransferase n=1 Tax=Methanothermobacter thermautotrophicus CaT2 RepID=T2GIT0_METTF
methyltransferase-like protein
13_1_40cm_4_scaffold_5165_7
RBG_13_Bathyarchaeota_46_16b_curated, Bathyarchaeota, Archaea

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5117..6037
DNA (921bp) protein (307aa)
Ribonuclease Z (EC:3.1.26.11)
Ribonuclease Z n=1 Tax=uncultured archaeon RepID=D1JEG1_9ARCH
ribonuclease Z Tax=RBG_13_Bathyarchaeota_46_16b_curated
13_1_40cm_4_scaffold_5165_8
RBG_16_Bathyarchaeota_48_13_curated, Bathyarchaeota, Archaea

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comp(6473..7030)
DNA (558bp) protein (186aa)
UPF0200 protein PF1294 n=2 Tax=Pyrococcus furiosus RepID=Y1294_PYRFU
hypothetical protein Tax=RBG_16_Bathyarchaeota_48_13_curated
hypothetical protein
13_1_40cm_4_scaffold_5165_9
RBG_13_Bathyarchaeota_38_9_curated, Bathyarchaeota, Archaea

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7213..7680
DNA (468bp) protein (156aa)
LigT; 2'-5' RNA ligase; K01975 2'-5' RNA ligase [EC:6.5.1.-] Tax=RBG_13_Bathyarchaeota_38_9_curated
2'-5' RNA ligase n=1 Tax=Methanopyrus kandleri (strain AV19 / DSM 6324 / JCM 9639 / NBRC 100938) RepID=Q8TVM2_METKA
LigT; 2'-5' RNA ligase
13_1_40cm_4_scaffold_5165_10
Thaumarchaeota archaeon SCGC AB-539-E09, Thaumarchaeota, Archaea

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8390..9115
DNA (726bp) protein (242aa)
tRNA adenylyltransferase {ECO:0000313|EMBL:EMR74291.1}; EC=2.7.7.72 {ECO:0000313|EMBL:EMR74291.1};; Flags: Fragment;; TaxID=1198115 species="Archaea; Thaumarchaeota; unclassified Thaumarchaeota.;" sou
tRNA nucleotidyltransferase CCA-adding enzyme (EC:2.7.7.72)
tRNA adenylyltransferase (Fragment) n=1 Tax=Thaumarchaeota archaeon SCGC AB-539-E09 RepID=M7TWP9_9ARCH
13_1_40cm_4_scaffold_5165_11

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9094..9864
DNA (771bp) protein (257aa)
Ser/Thr protein kinase n=1 Tax=Candidatus Nitrosopumilus sp. AR2 RepID=K0BF72_9ARCH
Marine sediment metagenome DNA, contig: S01H1_L00574 {ECO:0000313|EMBL:GAF84883.1}; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagen
Ser/Thr protein kinase
13_1_40cm_4_scaffold_5165_12
uncultured Candidatus Nitrosocaldus sp., Candidatus Nitrosocaldus, Crenarchaeota, Archaea

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comp(9873..10703)
DNA (831bp) protein (277aa)
ABC transporter permease protein n=1 Tax=uncultured Candidatus Nitrosocaldus sp. RepID=Q1ER87_9CREN
ABC transporter permease protein {ECO:0000313|EMBL:BAE95239.1}; TaxID=766501 species="Archaea; Crenarchaeota; Candidatus Nitrosocaldus; environmental samples.;" source="uncultured Candidatus Nitrosoca
ABC transporter permease
13_1_40cm_4_scaffold_5165_13
Candidatus Caldiarchaeum subterraneum, Candidatus Caldiarchaeum, Thaumarchaeota, Archaea

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comp(10715..11536)
DNA (822bp) protein (274aa)
ABC transporter n=1 Tax=Candidatus Caldiarchaeum subterraneum RepID=Q4LED5_9ARCH
ABC-2 type transport system protein
ABC transporter {ECO:0000313|EMBL:BAE03288.1}; ABC-2 type transport system protein {ECO:0000313|EMBL:BAJ51581.1}; TaxID=311458 species="Archaea; Thaumarchaeota; unclassified Thaumarchaeota; Candidatus
13_1_40cm_4_scaffold_5165_14
Candidatus Acetothermus autotrophicum, Candidatus Acetothermum, Acetothermia, Bacteria

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comp(11523..12599)
DNA (1077bp) protein (359aa)
Antibiotic transport system ATP-binding protein n=1 Tax=uncultured candidate division OP1 bacterium RepID=H5SQX0_9BACT
Antibiotic transport system ATP-binding protein {ECO:0000313|EMBL:BAL58487.1}; TaxID=1446466 species="Bacteria; Acetothermia; Candidatus Acetothermum.;" source="Candidatus Acetothermus autotrophicum.;
putative ABC transporter ATP-binding protein
13_1_40cm_4_scaffold_5165_15
unknown

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12996..13202
DNA (207bp) protein (69aa)

This feature has no annotations

13_1_40cm_4_scaffold_5165_16
unknown

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13577..14092
DNA (516bp) protein (172aa)

This feature has no annotations

13_1_40cm_4_scaffold_5165_17
RBG_13_Bathyarchaeota_38_9_curated, Bathyarchaeota, Archaea

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15627..15986
DNA (360bp) protein (120aa)
Transcriptional regulator, PadR family n=2 Tax=Clostridiales RepID=B0NE98_CLOSV
PadR family transcriptional regulator Tax=RBG_13_Bathyarchaeota_38_9_curated
DNA-binding protein
13_1_40cm_4_scaffold_5165_18
RBG_13_Bathyarchaeota_38_9_curated, Bathyarchaeota, Archaea

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16002..16697
DNA (696bp) protein (232aa)
sipW; signal peptidase I (EC:3.4.21.89); K13280 signal peptidase, endoplasmic reticulum-type [EC:3.4.-.-] Tax=RBG_13_Bathyarchaeota_38_9_curated
13_1_40cm_4_scaffold_5165_19
Vulcanisaeta distributa, Vulcanisaeta, Thermoproteales, Thermoprotei, Crenarchaeota, Archaea

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16871..17353
DNA (483bp) protein (161aa)
Uncharacterized protein n=1 Tax=Vulcanisaeta distributa (strain DSM 14429 / JCM 11212 / NBRC 100878 / IC-017) RepID=E1QSB6_VULDI
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADN49509.1}; TaxID=572478 species="Archaea; Crenarchaeota; Thermoprotei; Thermoproteales; Thermoproteaceae; Vulcanisaeta.;" source="Vulcanisaeta distributa (s
13_1_40cm_4_scaffold_5165_20
unknown

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comp(17646..18233)
DNA (588bp) protein (196aa)

This feature has no annotations

13_1_40cm_4_scaffold_5165_21
RBG_19FT_COMBO_Chloroflexi_62_14_curated, Chloroflexi, Bacteria

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comp(18767..19348)
DNA (582bp) protein (194aa)
putative N-acetyltransferase id=1245772 bin=RBG9 species=RBG9 genus=RBG9 taxon_order=RBG9 taxon_class=RBG9 phylum=Chloroflexi tax=RBG9 organism_group=Chloroflexi
putative N-acetyltransferase Tax=RBG_19FT_COMBO_Chloroflexi_62_14_curated
hypothetical protein
13_1_40cm_4_scaffold_5165_22
unknown

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comp(19386..19544)
DNA (159bp) protein (53aa)

This feature has no annotations

13_1_40cm_4_scaffold_5165_23
RBG_13_Deltaproteobacteria_65_10_curated, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(20470..21162)
DNA (693bp) protein (231aa)
hypothetical protein Tax=RBG_13_Deltaproteobacteria_65_10_curated
hypothetical protein id=24577506 bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
hypothetical protein
13_1_40cm_4_scaffold_5165_24
unknown

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21354..21578
DNA (225bp) protein (75aa)

This feature has no annotations

13_1_40cm_4_scaffold_5165_25
Candidatus Nitrospira defluvii, Nitrospira, Nitrospirales, Nitrospira, Nitrospirae, Bacteria

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comp(21575..22738)
DNA (1164bp) protein (388aa)
Tetracycline efflux transporter n=1 Tax=Candidatus Nitrospira defluvii RepID=D8P7J5_9BACT
tetA; tetracycline efflux transporter
Tetracycline efflux transporter {ECO:0000313|EMBL:CBK43341.1}; TaxID=330214 species="Bacteria; Nitrospirae; Nitrospirales; Nitrospiraceae; Nitrospira.;" source="Candidatus Nitrospira defluvii.;"
13_1_40cm_4_scaffold_5165_26
unknown

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comp(23849..24007)
DNA (159bp) protein (53aa)

This feature has no annotations

13_1_40cm_4_scaffold_5165_27
Candidatus Caldiarchaeum subterraneum, Candidatus Caldiarchaeum, Thaumarchaeota, Archaea

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24405..24836
DNA (432bp) protein (144aa)
Putative uncharacterized protein n=1 Tax=Candidatus Caldiarchaeum subterraneum RepID=E6N2Q2_9ARCH
hypothetical protein
Putative uncharacterized protein {ECO:0000313|EMBL:BAJ46608.1}; TaxID=311458 species="Archaea; Thaumarchaeota; unclassified Thaumarchaeota; Candidatus Caldiarchaeum.;" source="Candidatus Caldiarchaeum
13_1_40cm_4_scaffold_5165_28
RBG_16_Thaumarchaeota_49_8_curated, Thaumarchaeota, TACK, Archaea

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24881..25408
DNA (528bp) protein (176aa)
transcriptional regulator, MarR family
transcriptional regulator, MarR family id=5240652 bin=GW2011_AR10_complete species=GW2011_AR10 genus=GW2011_AR10 taxon_order=GW2011_AR10 taxon_class=GW2011_AR10 phylum=Archaeon tax=GW2011_AR10_complete organism_group=Archaeon organism_desc=closed, complete GWA2_AR10
Tax=RBG_16_Thaumarchaeota_49_8_curated
13_1_40cm_4_scaffold_5165_29
unknown

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26211..26423
DNA (213bp) protein (71aa)

This feature has no annotations

13_1_40cm_4_scaffold_5165_30
unknown

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comp(26430..26987)
DNA (558bp) protein (186aa)

This feature has no annotations

Displaying items 1-30 of 31 in total

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