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13_1_40cm_4_scaffold_52

Search features with annotation key words

Displaying items 1-30 of 36 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_40cm_4_scaffold_52_1
RLO_RIF_CHLX_71_12, Chloroflexi, Bacteria

Not on your lists

comp(3..521)
DNA (519bp) protein (173aa)
Oligopeptide ABC transporter, ATP-binding protein n=1 Tax=Thermomicrobium roseum (strain ATCC 27502 / DSM 5159 / P-2) RepID=B9L0D6_THERP
oligopeptide ABC transporter ATP-binding protein; K02031 peptide/nickel transport system ATP-binding protein Tax=RIFCSPLOWO2_12_FULL_RIF_CHLX_71_12_curated
oligopeptide ABC transporter ATP-binding protein
13_1_40cm_4_scaffold_52_2
unknown

Not on your lists

825..1517
DNA (693bp) protein (231aa)

This feature has no annotations

13_1_40cm_4_scaffold_52_3
RLO_RIF_CHLX_71_12, Chloroflexi, Bacteria

Not on your lists

comp(1514..2434)
DNA (921bp) protein (307aa)
Nickel-transporting ATPase n=5 Tax=Dehalococcoides mccartyi RepID=A5FQK1_DEHSB
binding-protein-dependent transport system inner membrane protein; K15581 oligopeptide transport system permease protein Tax=RIFCSPLOWO2_12_FULL_RIF_CHLX_71_12_curated
binding-protein-dependent transporters inner membrane component
13_1_40cm_4_scaffold_52_4
RLO_RIF_CHLX_71_12, Chloroflexi, Bacteria

Not on your lists

comp(2552..4243)
DNA (1692bp) protein (564aa)
Extracellular solute-binding protein family 5 n=1 Tax=Chloroflexus aggregans (strain MD-66 / DSM 9485) RepID=B8G386_CHLAD
extracellular solute-binding protein; K02035 peptide/nickel transport system substrate-binding protein Tax=RIFCSPLOWO2_12_FULL_RIF_CHLX_71_12_curated
family 5 extracellular solute-binding protein
13_1_40cm_4_scaffold_52_5
Pelosinus fermentans, Pelosinus, Selenomonadales, Negativicutes, Firmicutes, Bacteria

Not on your lists

comp(4327..5862)
DNA (1536bp) protein (512aa)
ABC-type transporter, periplasmic subunit n=6 Tax=Pelosinus RepID=I8RET1_9FIRM
ABC-type transporter, periplasmic subunit {ECO:0000313|EMBL:EIW17913.1}; TaxID=1149862 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Veillonellaceae; Pelosinus.;" source="Pelosinus fe
ABC-type transporter, periplasmic subunit
13_1_40cm_4_scaffold_52_6
unknown

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comp(5901..6470)
DNA (570bp) protein (190aa)

This feature has no annotations

13_1_40cm_4_scaffold_52_7
RBG_16_RIF_CHLX_72_14_curated, RIF-CHLX, Bacteria

Not on your lists

comp(6467..7132)
DNA (666bp) protein (222aa)
RNA polymerase, sigma-24 subunit, ECF subfamily n=1 Tax=Herpetosiphon aurantiacus (strain ATCC 23779 / DSM 785) RepID=A9AW11_HERA2
ECF subfamily RNA polymerase sigma-24 factor; K03088 RNA polymerase sigma-70 factor, ECF subfamily Tax=RBG_16_RIF_CHLX_72_14_curated
ECF subfamily RNA polymerase sigma-24 factor
13_1_40cm_4_scaffold_52_8
RBG_16_Armatimonadetes_58_9_curated, Armatimonadetes, Bacteria

Not on your lists

comp(7129..8016)
DNA (888bp) protein (296aa)
NLP/P60 Tax=RBG_16_Armatimonadetes_58_9_curated
NLP/P60 protein id=4633031 bin=GWF2_Planctomycetes_42_9 species=Caldithrix abyssi genus=Caldithrix taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWF2_Planctomycetes_42_9 organism_group=Planctomycetes
NLP/P60 protein
13_1_40cm_4_scaffold_52_9
Anaerobaculum mobile, Anaerobaculum, Synergistales, Synergistia, Synergistetes, Bacteria

Not on your lists

comp(7998..9518)
DNA (1521bp) protein (507aa)
Probable glycine dehydrogenase (decarboxylating) subunit 2 {ECO:0000256|HAMAP-Rule:MF_00713}; EC=1.4.4.2 {ECO:0000256|HAMAP-Rule:MF_00713};; Glycine cleavage system P-protein subunit 2 {ECO:0000256|HA
Probable glycine dehydrogenase (decarboxylating) subunit 2 n=1 Tax=Anaerobaculum mobile (strain ATCC BAA-54 / DSM 13181 / NGA) RepID=I4BYX9_ANAMD
glycine cleavage system protein P
13_1_40cm_4_scaffold_52_10
RLO_RIF_CHLX_71_12, Chloroflexi, Bacteria

Not on your lists

comp(9515..10891)
DNA (1377bp) protein (459aa)
glycine dehydrogenase subunit 1; K00282 glycine dehydrogenase subunit 1 [EC:1.4.4.2] Tax=RIFCSPLOWO2_12_FULL_RIF_CHLX_71_12_curated
Probable glycine dehydrogenase [decarboxylating] subunit 1 n=1 Tax=Alicyclobacillus acidocaldarius (strain Tc-4-1) RepID=F8IL61_ALIAT
gcvPA; glycine dehydrogenase
13_1_40cm_4_scaffold_52_11
Carboxydothermus hydrogenoformans, Carboxydothermus, Thermoanaerobacterales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(10967..11371)
DNA (405bp) protein (135aa)
Glycine cleavage system H protein n=1 Tax=Carboxydothermus hydrogenoformans (strain Z-2901 / DSM 6008) RepID=GCSH_CARHZ
gcvH; glycine cleavage system H protein
Glycine cleavage system H protein {ECO:0000255|HAMAP-Rule:MF_00272}; TaxID=246194 species="Bacteria; Firmicutes; Clostridia; Thermoanaerobacterales; Thermoanaerobacteraceae; Carboxydothermus.;" source
13_1_40cm_4_scaffold_52_12
RLO_RIF_CHLX_71_12, Chloroflexi, Bacteria

Not on your lists

comp(11424..12527)
DNA (1104bp) protein (368aa)
Aminomethyltransferase n=1 Tax=Sorangium cellulosum So0157-2 RepID=S4XKA6_SORCE
glycine cleavage system protein T Tax=RIFCSPLOWO2_12_FULL_RIF_CHLX_71_12_curated
glycine cleavage system protein T
13_1_40cm_4_scaffold_52_13
RBG_16_RIF_CHLX_72_14_curated, RIF-CHLX, Bacteria

Not on your lists

comp(12527..12979)
DNA (453bp) protein (151aa)
NUDIX hydrolase Tax=RBG_16_RIF_CHLX_72_14_curated
NUDIX hydrolase id=14629704 bin=bin8_Chloro species=Gordonia kroppenstedtii genus=Gordonia taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=bin8_Chloro organism_group=Chloroflexi
NUDIX hydrolase
13_1_40cm_4_scaffold_52_14
RLO_RIF_CHLX_71_12, Chloroflexi, Bacteria

Not on your lists

comp(13137..13919)
DNA (783bp) protein (261aa)
HDIG domain-containing protein; K09163 hypothetical protein Tax=RIFCSPLOWO2_12_FULL_RIF_CHLX_71_12_curated
metal dependent phosphohydrolase; K09163 hypothetical protein id=24482170 bin=RBG_19FT_COMBO_GAL15_69_19 species=Moorella thermoacetica genus=Moorella taxon_order=Thermoanaerobacterales taxon_class=Clostridia phylum=Firmicutes tax=RBG_19FT_COMBO_GAL15_69_19 organism_group=GAL15 organism_desc=Curation Candidate
metal dependent phosphohydrolase
13_1_40cm_4_scaffold_52_15
unknown

Not on your lists

13953..15053
DNA (1101bp) protein (367aa)

This feature has no annotations

13_1_40cm_4_scaffold_52_16
RLO_RIF_CHLX_71_12, Chloroflexi, Bacteria

Not on your lists

comp(15057..15479)
DNA (423bp) protein (141aa)
Tax=RIFCSPLOWO2_12_FULL_RIF_CHLX_71_12_curated
13_1_40cm_4_scaffold_52_17
RBG_13_Chloroflexi_48_10_curated, Chloroflexi, Bacteria

Not on your lists


comp(15476..16474)
DNA (999bp) protein (333aa)
gcp; O-sialoglycoprotein endopeptidase (EC:3.4.24.57); K01409 O-sialoglycoprotein endopeptidase [EC:3.4.24.57] Tax=RBG_13_Chloroflexi_48_10_curated
tRNA N6-adenosine threonylcarbamoyltransferase n=1 Tax=Caldilinea aerophila (strain DSM 14535 / JCM 11387 / NBRC 104270 / STL-6-O1) RepID=I0HYQ8_CALAS
gcp; O-sialoglycoprotein endopeptidase
13_1_40cm_4_scaffold_52_18
RLO_RIF_CHLX_71_12, Chloroflexi, Bacteria

Not on your lists

comp(16471..16989)
DNA (519bp) protein (173aa)
ribosomal-protein-alanine acetyltransferase; K03789 ribosomal-protein-alanine N-acetyltransferase [EC:2.3.1.128] Tax=RIFCSPLOWO2_12_FULL_RIF_CHLX_71_12_curated
Ribosomal-protein-alanine acetyltransferase id=4767750 bin=GWC2_Chloroflexi_73_18 species=Thermaerobacter marianensis genus=Thermaerobacter taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWC2_Chloroflexi_73_18 organism_group=Chloroflexi organism_desc=Good +
ribosomal-protein-alanine N-acetyltransferase
13_1_40cm_4_scaffold_52_19
CG_Anaero_02, Anaerolineae, Chloroflexi, Bacteria

Not on your lists

comp(17003..17737)
DNA (735bp) protein (245aa)
Peptidase M22, glycoprotease n=1 Tax=Roseiflexus sp. (strain RS-1) RepID=A5V1E0_ROSS1
peptidase M22 glycoprotease Tax=CG_Anaero_02
peptidase M22, glycoprotease
13_1_40cm_4_scaffold_52_20
RLO_RIF_CHLX_71_12, Chloroflexi, Bacteria

Not on your lists

comp(17721..18221)
DNA (501bp) protein (167aa)
Uncharacterized protein n=1 Tax=Nitrolancetus hollandicus Lb RepID=I4EMM3_9CHLR
hypothetical protein; K06925 UPF0079 ATP-binding protein Tax=RIFCSPLOWO2_12_FULL_RIF_CHLX_71_12_curated
hypothetical protein
13_1_40cm_4_scaffold_52_21
RLO_RIF_CHLX_71_12, Chloroflexi, Bacteria

Not on your lists

comp(18214..18549)
DNA (336bp) protein (112aa)
Tax=RIFCSPLOWO2_12_FULL_RIF_CHLX_71_12_curated
13_1_40cm_4_scaffold_52_22
RLO_RIF_CHLX_71_12, Chloroflexi, Bacteria

Not on your lists

comp(18559..19509)
DNA (951bp) protein (317aa)
Uncharacterized protein n=1 Tax=Candidatus Nitrospira defluvii RepID=D8PG11_9BACT
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_RIF_CHLX_71_12_curated
hypothetical protein
13_1_40cm_4_scaffold_52_23
RBG_19FT_COMBO_Chloroflexi_56_12_curated, Chloroflexi, Bacteria

Not on your lists

comp(19506..20798)
DNA (1293bp) protein (431aa)
Putative uncharacterized protein n=1 Tax=Roseiflexus sp. (strain RS-1) RepID=A5UW13_ROSS1
hypothetical protein Tax=RBG_19FT_COMBO_Chloroflexi_56_12_curated
hypothetical protein
13_1_40cm_4_scaffold_52_24
RBG_16_Chloroflexi_68_14_curated, Chloroflexi, Bacteria

Not on your lists

comp(20795..21511)
DNA (717bp) protein (239aa)
Peptidase C26 family protein n=1 Tax=Caldilinea aerophila (strain DSM 14535 / JCM 11387 / NBRC 104270 / STL-6-O1) RepID=I0I5D7_CALAS
peptidase C26; K07010 putative glutamine amidotransferase Tax=RBG_16_Chloroflexi_68_14_curated
peptidase C26 family protein
13_1_40cm_4_scaffold_52_25
RBG_16_RIF_CHLX_69_14_curated, RIF-CHLX, Bacteria

Not on your lists

comp(21508..21933)
DNA (426bp) protein (142aa)
putative methylmalonyl-CoA epimerase (EC:5.1.99.1); K05606 methylmalonyl-CoA/ethylmalonyl-CoA epimerase [EC:5.1.99.1] Tax=RBG_16_RIF_CHLX_69_14_curated
Putative methylmalonyl-CoA epimerase id=4714464 bin=GWC2_Chloroflexi_73_18 species=uncultured bacterium A1Q1_fos_2111 genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Chloroflexi_73_18 organism_group=Chloroflexi organism_desc=Good +
glyoxalase/bleomycin resistance protein/dioxygenase
13_1_40cm_4_scaffold_52_26
RBG_13_Chloroflexi_68_17_curated, Chloroflexi, Bacteria

Not on your lists

comp(21930..23567)
DNA (1638bp) protein (546aa)
putative isobutyryl-CoA mutase; K01848 methylmalonyl-CoA mutase, N-terminal domain [EC:5.4.99.2] Tax=RBG_13_Chloroflexi_68_17_curated
methylmalonyl-CoA mutase large subunit (EC:5.4.99.2)
Methylmalonyl-CoA mutase, large subunit n=1 Tax=Kyrpidia tusciae (strain DSM 2912 / NBRC 15312 / T2) RepID=D5WXX7_KYRT2
13_1_40cm_4_scaffold_52_27
Paenibacillus sp. FSL H8-237, Paenibacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(23597..24145)
DNA (549bp) protein (183aa)
hypothetical protein n=1 Tax=Paenibacillus sp. OSY-SE RepID=UPI00035E6534
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ETT67861.1}; TaxID=1227350 species="Bacteria; Firmicutes; Bacilli; Bacillales; Paenibacillaceae; Paenibacillus.;" source="Paenibacillus sp. FSL H8-237.;"
13_1_40cm_4_scaffold_52_28
unknown

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comp(24149..25042)
DNA (894bp) protein (298aa)

This feature has no annotations

13_1_40cm_4_scaffold_52_29
RLO_RIF_CHLX_71_12, Chloroflexi, Bacteria

Not on your lists

comp(25120..25614)
DNA (495bp) protein (165aa)
acetyl-CoA carboxylase (EC:6.4.1.2)
Biotin/lipoyl attachment domain-containing protein n=1 Tax=Opitutaceae bacterium TAV5 RepID=H1IUE1_9BACT
biotin carboxyl carrier protein Tax=RIFCSPLOWO2_12_FULL_RIF_CHLX_71_12_curated
13_1_40cm_4_scaffold_52_30
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(25614..27083)
DNA (1470bp) protein (490aa)
accC; acetyl CoA carboxylase, biotin carboxylase subunit (EC:6.3.4.14) Tax=GWA2_Rokubacteria_73_35_curated
accC; acetyl CoA carboxylase, biotin carboxylase subunit (EC:6.3.4.14)
Acetyl CoA carboxylase, biotin carboxylase subunit id=2259326 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
Displaying items 1-30 of 36 in total

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