ggKbase home page

13_1_40cm_4_scaffold_5229

Search features with annotation key words

Displaying 26 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_40cm_4_scaffold_5229_1
RBG_16_Euryarchaeota_68_13_curated, Euryarchaeota, Archaea

Not on your lists

3..317
DNA (315bp) protein (105aa)
ubiquinone/menaquinone biosynthesis methyltransferase; K03183 ubiquinone/menaquinone biosynthesis methyltransferase [EC:2.1.1.163 2.1.1.201] Tax=RBG_16_Euryarchaeota_68_13_curated
hypothetical protein n=1 Tax=Hydrogenedentes bacterium JGI 0000039-J10 RepID=UPI000361254F
13_1_40cm_4_scaffold_5229_trna_1
unknown

Not on your lists

comp(359..430)
DNA (72bp)
transferRNA
13_1_40cm_4_scaffold_5229_2
Paenibacillus sp. Y412MC10, Paenibacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(505..933)
DNA (429bp) protein (143aa)
RNA binding S1 domain protein n=2 Tax=Paenibacillus RepID=D3E766_GEOS4
RNA-binding S1 domain-containing protein
RNA binding S1 domain protein {ECO:0000313|EMBL:ACX62359.1}; TaxID=481743 species="Bacteria; Firmicutes; Bacilli; Bacillales; Paenibacillaceae; Paenibacillus.;" source="Geobacillus sp. (strain Y412MC1
13_1_40cm_4_scaffold_5229_3
Thermotoga sp. Mc24, Thermotoga, Thermotogales, Thermotogae, Thermotogae, Bacteria

Not on your lists

comp(1508..1849)
DNA (342bp) protein (114aa)
mazG; nucleoside triphosphate pyrophosphohydrolase (EC:3.6.1.19)
Nucleoside triphosphate pyrophosphohydrolase/pyrophosphatase MazG n=3 Tax=Thermotoga RepID=MAZG_THEMA
Nucleotide pyrophosphohydrolase {ECO:0000313|EMBL:KHC90641.1}; TaxID=1231241 species="Bacteria; Thermotogae; Thermotogales; Thermotogaceae; Thermotoga.;" source="Thermotoga sp. Mc24.;"
13_1_40cm_4_scaffold_5229_4
unknown

Not on your lists

1975..2118
DNA (144bp) protein (48aa)

This feature has no annotations

13_1_40cm_4_scaffold_5229_5
Thermomicrobium roseum, Thermomicrobium, Thermomicrobiales, Thermomicrobia, Chloroflexi, Bacteria

Not on your lists

comp(2270..3406)
DNA (1137bp) protein (379aa)
Multidrug resistance protein, putative n=1 Tax=Thermomicrobium roseum (strain ATCC 27502 / DSM 5159 / P-2) RepID=B9L3K0_THERP
multidrug resistance protein
Multidrug resistance protein, putative {ECO:0000313|EMBL:ACM06583.1}; TaxID=309801 species="Bacteria; Chloroflexi; Thermomicrobiales; Thermomicrobiaceae; Thermomicrobium.;" source="Thermomicrobium ros
13_1_40cm_4_scaffold_5229_6
RBG_16_Euryarchaeota_68_12_curated, Euryarchaeota, Archaea

Not on your lists

comp(3387..3785)
DNA (399bp) protein (133aa)
Endoribonuclease L-PSP n=1 Tax=Kineococcus radiotolerans (strain ATCC BAA-149 / DSM 14245 / SRS30216) RepID=A6WBF2_KINRD
hypothetical protein Tax=RBG_16_Euryarchaeota_68_12_curated
endoribonuclease L-PSP
13_1_40cm_4_scaffold_5229_7
Chloroflexus aggregans, Chloroflexus, Chloroflexales, Chloroflexia, Chloroflexi, Bacteria

Not on your lists

comp(3808..5325)
DNA (1518bp) protein (506aa)
Transcription-repair-coupling factor {ECO:0000256|HAMAP-Rule:MF_00969}; Short=TRCF {ECO:0000256|HAMAP-Rule:MF_00969};; EC=3.6.4.- {ECO:0000256|HAMAP-Rule:MF_00969};; TaxID=326427 species="Bacteria; Ch
Transcription-repair-coupling factor n=1 Tax=Chloroflexus aggregans (strain MD-66 / DSM 9485) RepID=B8GAX7_CHLAD
transcription-repair coupling factor
13_1_40cm_4_scaffold_5229_8
unknown

Not on your lists

5643..6230
DNA (588bp) protein (196aa)

This feature has no annotations

13_1_40cm_4_scaffold_5229_9
unknown

Not on your lists

6369..7295
DNA (927bp) protein (309aa)

This feature has no annotations

13_1_40cm_4_scaffold_5229_10

Not on your lists

comp(7322..8185)
DNA (864bp) protein (288aa)
dacF2; D-alanyl-D-alanine carboxypeptidase (EC:3.4.16.4)
hypothetical protein n=1 Tax=Anaeromusa acidaminophila RepID=UPI0003801FF3
Uncharacterized protein {ECO:0000313|EMBL:KKL93180.1}; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
13_1_40cm_4_scaffold_5229_11
R_OP3X_63_14, OP3X, Bacteria

Not on your lists

comp(8216..9172)
DNA (957bp) protein (319aa)
hypothetical protein n=1 Tax=Candidatus Omnitrophus fodinae SCGC AAA011-A17 RepID=UPI0003B4E4D5
hypothetical protein Tax=RIFCSPHIGHO2_02_FULL_OP3X_63_14_curated
13_1_40cm_4_scaffold_5229_12
unknown

Not on your lists

comp(9182..10342)
DNA (1161bp) protein (387aa)

This feature has no annotations

13_1_40cm_4_scaffold_5229_13
Carboxydothermus hydrogenoformans, Carboxydothermus, Thermoanaerobacterales, Clostridia, Firmicutes, Bacteria

Not on your lists

10364..11005
DNA (642bp) protein (214aa)
pth; peptidyl-tRNA hydrolase (EC:3.1.1.29)
Peptidyl-tRNA hydrolase {ECO:0000255|HAMAP-Rule:MF_00083}; Short=PTH {ECO:0000255|HAMAP-Rule:MF_00083};; EC=3.1.1.29 {ECO:0000255|HAMAP-Rule:MF_00083};; TaxID=246194 species="Bacteria; Firmicutes; Clo
Peptidyl-tRNA hydrolase n=1 Tax=Carboxydothermus hydrogenoformans (strain Z-2901 / DSM 6008) RepID=PTH_CARHZ
13_1_40cm_4_scaffold_5229_14
CSP1_4_Chloroflexi, Gitt-GS-136, Chloroflexi, Bacteria

Not on your lists

comp(10992..12200)
DNA (1209bp) protein (403aa)
hypothetical protein id=14629098 bin=bin8_Chloro species=Ktedonobacter racemifer genus=Ktedonobacter taxon_order=Ktedonobacterales taxon_class=Ktedonobacteria phylum=Chloroflexi tax=bin8_Chloro organism_group=Chloroflexi
hypothetical protein Tax=CSP1_4_Chloroflexi
major facilitator superfamily protein
13_1_40cm_4_scaffold_5229_15
Caldilinea aerophila, Caldilinea, Caldilineales, Caldilineae, Chloroflexi, Bacteria

Not on your lists

comp(12279..13415)
DNA (1137bp) protein (379aa)
Putative two-component response regulator n=1 Tax=Caldilinea aerophila (strain DSM 14535 / JCM 11387 / NBRC 104270 / STL-6-O1) RepID=I0I1A5_CALAS
putative two-component response regulator
Putative two-component response regulator {ECO:0000313|EMBL:BAL99042.1}; TaxID=926550 species="Bacteria; Chloroflexi; Caldilineae; Caldilineales; Caldilineaceae; Caldilinea.;" source="Caldilinea aerop
13_1_40cm_4_scaffold_5229_16
unknown

Not on your lists

comp(13452..13802)
DNA (351bp) protein (117aa)

This feature has no annotations

13_1_40cm_4_scaffold_5229_17
Bacteroides eggerthii CAG:109, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(13799..14230)
DNA (432bp) protein (144aa)
Prokaryotic diacylglycerol kinase n=1 Tax=Bacteroides eggerthii CAG:109 RepID=R5K283_9BACE
Prokaryotic diacylglycerol kinase {ECO:0000313|EMBL:CCY55082.1}; TaxID=1263043 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides; environmental samples.;" sourc
Diacylglycerol kinase
13_1_40cm_4_scaffold_5229_18
RBG_16_Chloroflexi_58_14_curated, Chloroflexi, Bacteria

Not on your lists

comp(14227..14688)
DNA (462bp) protein (154aa)
Endoribonuclease YbeY n=1 Tax=Moorella thermoacetica (strain ATCC 39073) RepID=YBEY_MOOTA
hypothetical protein; K07042 probable rRNA maturation factor Tax=RBG_16_Chloroflexi_58_14_curated
hypothetical protein
13_1_40cm_4_scaffold_5229_19
unknown

Not on your lists

comp(14713..15045)
DNA (333bp) protein (111aa)

This feature has no annotations

13_1_40cm_4_scaffold_5229_20
Pelotomaculum thermopropionicum, Pelotomaculum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(15114..16853)
DNA (1740bp) protein (580aa)
Predicted membrane-associated HD superfamily hydrolase n=1 Tax=Pelotomaculum thermopropionicum (strain DSM 13744 / JCM 10971 / SI) RepID=A5D3W1_PELTS
HD superfamily hydrolase
Predicted membrane-associated HD superfamily hydrolase {ECO:0000313|EMBL:BAF59072.1}; TaxID=370438 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptococcaceae; Pelotomaculum.;" source="Pe
13_1_40cm_4_scaffold_5229_21
Desulfotomaculum kuznetsovii, Desulfotomaculum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(16919..17335)
DNA (417bp) protein (139aa)
7TM receptor with intracellular metal dependent phosphohydrolase {ECO:0000313|EMBL:AEG16159.1}; TaxID=760568 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptococcaceae; Desulfotomaculum.
7TM receptor with intracellular metal dependent phosphohydrolase; K07037
13_1_40cm_4_scaffold_5229_22
RBG_16_RIF_CHLX_69_14_curated, RIF-CHLX, Bacteria

Not on your lists

comp(17376..17558)
DNA (183bp) protein (61aa)
30S ribosomal protein S21 n=5 Tax=Clostridium RepID=RS21_CLOK1
30S ribosomal protein S21; K02970 small subunit ribosomal protein S21 Tax=RBG_16_RIF_CHLX_69_14_curated
rpsU; 30S ribosomal protein S21
13_1_40cm_4_scaffold_5229_23
unknown

Not on your lists

17778..18365
DNA (588bp) protein (196aa)

This feature has no annotations

13_1_40cm_4_scaffold_5229_24
GWA2_Elusimicrobia_69_24_curated, Elusimicrobia, Bacteria

Not on your lists

comp(18393..19160)
DNA (768bp) protein (256aa)
Methyltransferase type 12 n=1 Tax=Geobacter daltonii (strain DSM 22248 / JCM 15807 / FRC-32) RepID=B9M8Q4_GEODF
methyltransferase type 11 Tax=GWA2_Elusimicrobia_69_24_curated
methyltransferase type 12
13_1_40cm_4_scaffold_5229_25
Kutzneria sp. 744, Kutzneria, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

19188..19799
DNA (612bp) protein (204aa)
soxB; sarcosine oxidase beta subunit (EC:1.5.3.1)
Sarcosine oxidase subunit beta n=2 Tax=Streptomyces roseochromogenes subsp. oscitans RepID=V6L2S5_STRRC
Sarcosine oxidase, subunit beta {ECO:0000313|EMBL:EWM18003.1}; TaxID=345341 species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Kutzneria.;" source="Kutzneria sp. 744.;"
Displaying 26 items

View Taxonomy