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13_1_40cm_4_scaffold_528

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Displaying items 1-30 of 57 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_40cm_4_scaffold_528_1
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(1..285)
DNA (285bp) protein (95aa)
glycosyl transferase id=2419366 bin=GWA2_Methylomirabilis_73_35 species=Oscillatoriales cyanobacterium JSC-12 genus=unknown taxon_order=Oscillatoriales taxon_class=unknown phylum=Cyanobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
glycosyl transferase family protein Tax=GWA2_Rokubacteria_73_35_curated
glycosyltransferase
13_1_40cm_4_scaffold_528_2
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

450..1598
DNA (1149bp) protein (383aa)
acyl-CoA dehydrogenase, short-chain specific (EC:1.3.99.2) id=14626067 bin=bin7_NC10_sister species=Thermodesulfovibrio yellowstonii genus=Thermodesulfovibrio taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=bin7_NC10_sister organism_group=NC10
fadE25; acyl-CoA dehydrogenase (EC:1.3.99.-)
acyl-CoA dehydrogenase Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
13_1_40cm_4_scaffold_528_3
CSP1_6_Rokubacteria, Rokubacteria, Bacteria

Not on your lists

1595..2122
DNA (528bp) protein (176aa)
hypothetical protein id=14625184 bin=bin7_NC10_sister species=Ilumatobacter coccineus genus=Ilumatobacter taxon_order=Acidimicrobiales taxon_class=Actinobacteria phylum=Actinobacteria tax=bin7_NC10_sister organism_group=NC10
hypothetical protein Tax=CSP1_6_Rokubacteria
hypothetical protein
13_1_40cm_4_scaffold_528_4
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

2219..2944
DNA (726bp) protein (242aa)
phophonate C-P lyase system transcriptional regulator PhnF, GntR family; K03710 GntR family transcriptional regulator Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Transcriptional regulator, GntR family id=4849826 bin=GWC2_Methylomirabilis_70_16 species=Bordetella petrii genus=Bordetella taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
GntR family transcriptional regulator
13_1_40cm_4_scaffold_528_5
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

3082..5151
DNA (2070bp) protein (690aa)
5-oxoprolinase (ATP-hydrolyzing) (EC:3.5.2.9)
hyuA; N-methylhydantoinase A Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
5-oxoprolinase (ATP-hydrolyzing) id=4849827 bin=GWC2_Methylomirabilis_70_16 species=unknown genus=Amycolatopsis taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
13_1_40cm_4_scaffold_528_6
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

5177..6922
DNA (1746bp) protein (582aa)
5-oxoprolinase; K01474 N-methylhydantoinase B [EC:3.5.2.14] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
5-oxoprolinase; K01474 N-methylhydantoinase B [EC:3.5.2.14] id=14627495 bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin7_NC10_sister organism_group=NC10
5-oxoprolinase (EC:3.5.2.9)
13_1_40cm_4_scaffold_528_7
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

Not on your lists

6919..8079
DNA (1161bp) protein (387aa)
Acyl-CoA dehydrogenase domain protein id=4254262 bin=GWC2_Methylomirabilis_70_24 species=Ferroglobus placidus genus=Ferroglobus taxon_order=Archaeoglobales taxon_class=Archaeoglobi phylum=Euryarchaeota tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
acyl-CoA dehydrogenase domain protein Tax=GWA2_Rokubacteria_70_23_curated
acyl-CoA dehydrogenase domain protein
13_1_40cm_4_scaffold_528_8
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

Not on your lists

8111..8563
DNA (453bp) protein (151aa)
acyl dehydratase Tax=GWA2_Rokubacteria_70_23_curated
MaoC domain protein dehydratase id=4384721 bin=GWF2_Methylomirabilis_70_14 species=Thermoplasmatales archaeon SCGC AB-540-F20 genus=unknown taxon_order=Thermoplasmatales taxon_class=Thermoplasmata phylum=Euryarchaeota tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
acyl dehydratase
13_1_40cm_4_scaffold_528_9
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

8560..9726
DNA (1167bp) protein (389aa)
acetyl-CoA acetyltransferase Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Propanoyl-CoA C-acyltransferase id=4254074 bin=GWC2_Methylomirabilis_70_24 species=Desulfotomaculum gibsoniae genus=Desulfotomaculum taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
acetyl-CoA acetyltransferase
13_1_40cm_4_scaffold_528_10
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

Not on your lists

9785..10741
DNA (957bp) protein (319aa)
3-hydroxybutyryl-CoA dehydrogenase (EC:1.1.1.157); K00074 3-hydroxybutyryl-CoA dehydrogenase [EC:1.1.1.157] Tax=GWA2_Rokubacteria_70_23_curated
3-hydroxyacyl-CoA dehydrogenase family protein id=4384724 bin=GWF2_Methylomirabilis_70_14 species=unknown genus=Bradyrhizobium taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
3-hydroxybutyryl-CoA dehydrogenase
13_1_40cm_4_scaffold_528_11
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists

10741..11169
DNA (429bp) protein (143aa)
putative nucleic-acid-binding protein containing a Zn-ribbon Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
Putative uncharacterized protein id=1703953 bin=GWA2_Methylomirabilis_73_35 species=Desulfotomaculum gibsoniae genus=Desulfotomaculum taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
putative nucleic-acid-binding protein containing a Zn-ribbon
13_1_40cm_4_scaffold_528_12
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists

11166..11561
DNA (396bp) protein (132aa)
cobalamin B12-binding domain-containing protein; K01849 methylmalonyl-CoA mutase, C-terminal domain [EC:5.4.99.2] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
Cobalamin B12-binding domain protein id=1703951 bin=GWA2_Methylomirabilis_73_35 species=Thermotoga lettingae genus=Thermotoga taxon_order=Thermotogales taxon_class=Thermotogae phylum=Thermotogae tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
cobalamin B12-binding domain-containing protein
13_1_40cm_4_scaffold_528_13
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists

11647..13242
DNA (1596bp) protein (532aa)
methylmalonyl-CoA mutase, large subunit (EC:5.4.99.2); K01848 methylmalonyl-CoA mutase, N-terminal domain [EC:5.4.99.2] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
methylmalonyl-CoA mutase, large subunit (EC:5.4.99.2); K01848 methylmalonyl-CoA mutase, N-terminal domain [EC:5.4.99.2] id=14628013 bin=bin7_NC10_sister species=Ferroglobus placidus genus=Ferroglobus taxon_order=Archaeoglobales taxon_class=Archaeoglobi phylum=Euryarchaeota tax=bin7_NC10_sister organism_group=NC10
methylmalonyl-CoA mutase, large subunit (EC:5.4.99.2)
13_1_40cm_4_scaffold_528_14
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists

13245..15524
DNA (2280bp) protein (760aa)
aerobic-type carbon monoxide dehydrogenase, large subunit CoxL/CutL-like protein (EC:1.17.1.4) Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
xanthine dehydrogenase (EC:1.17.1.4)
Xanthine dehydrogenase id=4849835 bin=GWC2_Methylomirabilis_70_16 species=Magnetospirillum sp. SO-1 genus=Magnetospirillum taxon_order=Rhodospirillales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
13_1_40cm_4_scaffold_528_15
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists

15702..16895
DNA (1194bp) protein (398aa)
Formyl-CoA transferase (EC:2.8.3.16); K07749 formyl-CoA transferase [EC:2.8.3.16] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
Formyl-CoA transferase id=1703945 bin=GWA2_Methylomirabilis_73_35 species=uncultured Chloroflexi bacterium genus=unknown taxon_order=unknown taxon_class=unknown phylum=Chloroflexi tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
L-carnitine dehydratase/bile acid-inducible protein F
13_1_40cm_4_scaffold_528_16
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

16939..18048
DNA (1110bp) protein (370aa)
Opine dehydrogenase (EC:1.5.1.28) Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Opine dehydrogenase (EC:1.5.1.28)
NAD-dependent glycerol-3-phosphate dehydrogenase-like protein id=1703904 bin=GWA2_Methylomirabilis_73_35 species=Achromobacter xylosoxidans genus=Achromobacter taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_40cm_4_scaffold_528_17
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

18027..18347
DNA (321bp) protein (107aa)
livM; branched-chain amino acid ABC transporter system, permease protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Branched-chain amino acid ABC transporter permease protein id=1703897 bin=GWA2_Methylomirabilis_73_35 species=Symbiobacterium thermophilum genus=Symbiobacterium taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
inner-membrane translocator
13_1_40cm_4_scaffold_528_18
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

18344..19507
DNA (1164bp) protein (388aa)
putative branched chain amino acid ABC transporter substrate-binding protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Putative branched chain amino acid ABC transporter substrate-binding protein id=4849842 bin=GWC2_Methylomirabilis_70_16 species=Tistrella mobilis genus=Tistrella taxon_order=Rhodospirillales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
putative branched chain amino acid ABC transporter substrate-binding protein
13_1_40cm_4_scaffold_528_19
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

19513..20181
DNA (669bp) protein (223aa)
High-affinity branched-chain amino acid transport ATP-binding proteinlivF (LIV-I protein F) id=1703893 bin=GWA2_Methylomirabilis_73_35 species=Thermomicrobium roseum genus=Thermomicrobium taxon_order=Thermomicrobiales taxon_class=Thermomicrobia phylum=Chloroflexi tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
high-affinity branched-chain amino acid transport ATP-binding proteinlivF (LIV-I protein F); K01996 branched-chain amino acid transport system ATP-binding protein Tax=GWA2_Rokubacteria_73_35_curated
amino acid ABC transporter ATP-binding protein
13_1_40cm_4_scaffold_528_20
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

20184..21455
DNA (1272bp) protein (424aa)
phenylacetate--CoA ligase (EC:6.2.1.30); K01912 phenylacetate-CoA ligase [EC:6.2.1.30] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
phenylacetate--CoA ligase (EC:6.2.1.30)
Phenylacetate--CoA ligase id=1703891 bin=GWA2_Methylomirabilis_73_35 species=Desulfurobacterium thermolithotrophum genus=Desulfurobacterium taxon_order=Aquificales taxon_class=Aquificae phylum=Aquificae tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_40cm_4_scaffold_528_21
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

21478..22656
DNA (1179bp) protein (393aa)
CoA-transferase family III protein id=1703890 bin=GWA2_Methylomirabilis_73_35 species=delta proteobacterium NaphS2 genus=unknown taxon_order=unknown taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
putative acyl-CoA transferase/carnitine dehydratase Tax=GWA2_Rokubacteria_73_35_curated
putative acyl-CoA transferase/carnitine dehydratase
13_1_40cm_4_scaffold_528_22
RBG_19FT_COMBO_Chloroflexi_47_9_curated, Chloroflexi, Bacteria

Not on your lists

comp(22781..23089)
DNA (309bp) protein (103aa)
Tax=RBG_19FT_COMBO_Chloroflexi_47_9_curated
13_1_40cm_4_scaffold_528_23
R_Rokubacteria_69_13, Rokubacteria, Bacteria

Not on your lists

comp(23111..23377)
DNA (267bp) protein (89aa)
Tax=RIFCSPHIGHO2_02_FULL_Rokubacteria_69_13_curated
13_1_40cm_4_scaffold_528_24
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

23476..23778
DNA (303bp) protein (101aa)
butyryl-CoA dehydrogenase (EC:1.3.8.1) Tax=GWA2_Rokubacteria_73_35_curated
Butyryl-CoA dehydrogenase id=1703889 bin=GWA2_Methylomirabilis_73_35 species=Mahella australiensis genus=Mahella taxon_order=Thermoanaerobacterales taxon_class=Clostridia phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
acyl-CoA dehydrogenase
13_1_40cm_4_scaffold_528_25
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

23778..25046
DNA (1269bp) protein (423aa)
ABC-type branched-chain amino acid transport systems id=1703886 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=Magnetospirillum taxon_order=Rhodospirillales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
ABC-type branched-chain amino acid transport systems; K01999 branched-chain amino acid transport system substrate-binding protein Tax=GWA2_Rokubacteria_73_35_curated
ABC-type branched-chain amino acid transport systems
13_1_40cm_4_scaffold_528_26
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

Not on your lists

25242..26114
DNA (873bp) protein (291aa)
Branched-chain amino acid ABC-type transport system, permease components id=2644245 bin=GWF2_Methylomirabilis_70_14 species=unknown genus=Magnetospirillum taxon_order=Rhodospirillales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
branched chain amino acid ABC transporter; K01997 branched-chain amino acid transport system permease protein Tax=GWA2_Rokubacteria_70_23_curated
High-affinity branched-chain amino acid transport system permease protein LivH
13_1_40cm_4_scaffold_528_27
unknown

Not on your lists

comp(26296..26391)
DNA (96bp) protein (32aa)

This feature has no annotations

13_1_40cm_4_scaffold_528_28
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

26604..27278
DNA (675bp) protein (225aa)
Branched-chain amino acid transport system permease protein LivM id=1703884 bin=GWA2_Methylomirabilis_73_35 species=Rhodovulum sp. PH10 genus=Rhodovulum taxon_order=Rhodobacterales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
ABC transporter permease; K01998 branched-chain amino acid transport system permease protein Tax=GWA2_Rokubacteria_73_35_curated
hypothetical protein
13_1_40cm_4_scaffold_528_29
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

27275..28009
DNA (735bp) protein (245aa)
ABC transporter related id=1703883 bin=GWA2_Methylomirabilis_73_35 species=Azospirillum brasilense genus=Azospirillum taxon_order=Rhodospirillales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
putative branched-chain amino acid ABC transporter, ATP-binding component (livG-like); K01995 branched-chain amino acid transport system ATP-binding protein Tax=GWA2_Rokubacteria_73_35_curated
braF1; high-affinity branched-chain amino acid transport ATP-binding protein BraF
13_1_40cm_4_scaffold_528_30
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

27987..28652
DNA (666bp) protein (222aa)
ABC transporter ATP-binding protein id=1703882 bin=GWA2_Methylomirabilis_73_35 species=Rubrobacter xylanophilus genus=Rubrobacter taxon_order=Rubrobacterales taxon_class=Actinobacteria phylum=Actinobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
ABC transporter ATP-binding protein; K01996 branched-chain amino acid transport system ATP-binding protein Tax=GWA2_Rokubacteria_73_35_curated
ABC transporter ATP-binding protein
Displaying items 1-30 of 57 in total

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