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13_1_40cm_4_scaffold_5582

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Displaying items 1-30 of 35 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_40cm_4_scaffold_5582_1
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

2..439
-----------------
DNA (438bp)
protein (146aa)
dehydrogenase/reductase 11 (EC:1.1.1.-); K00100 [EC:1.1.1.-] Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
Probable oxidoreductase (Short-chain dehydrogenase family) id=4320177 bin=GWC2_Methylomirabilis_70_24 species=unknown genus=Natrialba taxon_order=Halobacteriales taxon_class=Halobacteria phylum=Euryarchaeota tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
short-chain dehydrogenase/reductase SDR
13_1_40cm_4_scaffold_5582_2
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

452..772
-----------------
DNA (321bp)
protein (107aa)
sterol-binding protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Putative sterol carrier protein id=4320175 bin=GWC2_Methylomirabilis_70_24 species=Desulfomonile tiedjei genus=Desulfomonile taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
sterol-binding protein
13_1_40cm_4_scaffold_5582_3
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

893..1879
-----------------
DNA (987bp)
protein (329aa)
poly(R)-hydroxyalkanoic acid synthase subunit PhaC Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
poly(R)-hydroxyalkanoic acid synthase subunit PhaC id=14626101 bin=bin7_NC10_sister species=Aneurinibacillus aneurinilyticus genus=Aneurinibacillus taxon_order=Bacillales taxon_class=Bacilli phylum=Firmicutes tax=bin7_NC10_sister organism_group=NC10
poly(R)-hydroxyalkanoic acid synthase subunit PhaC
13_1_40cm_4_scaffold_5582_4
GWC2_Rokubacteria_70_16_curated, Rokubacteria, Bacteria

Not on your lists

1937..2500
-----------------
DNA (564bp)
protein (188aa)
Putative uncharacterized protein id=3479314 bin=GWC2_Methylomirabilis_70_16 species=Oscillochloris trichoides genus=Oscillochloris taxon_order=Chloroflexales taxon_class=Chloroflexi phylum=Chloroflexi tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
hypothetical protein Tax=GWC2_Rokubacteria_70_16_curated
hypothetical protein
13_1_40cm_4_scaffold_5582_5
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

2500..3054
-----------------
DNA (555bp)
protein (185aa)
phosphate acetyltransferase (EC:2.3.1.8)
Acyl dehydratase id=3479315 bin=GWC2_Methylomirabilis_70_16 species=Caulobacter sp. genus=Caulobacter taxon_order=Caulobacterales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
acyl dehydratase Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
13_1_40cm_4_scaffold_5582_6
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists

comp(3032..3775)
-----------------
DNA (744bp)
protein (248aa)
3-oxoacyl-ACP reductase; K00059 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
3-oxoacyl-(Acyl-carrier-protein) reductase id=3479316 bin=GWC2_Methylomirabilis_70_16 species=Thermodesulfatator indicus genus=Thermodesulfatator taxon_order=Thermodesulfobacteriales taxon_class=Thermodesulfobacteria phylum=Thermodesulfobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
3-oxoacyl-(acyl-carrier-protein) reductase
13_1_40cm_4_scaffold_5582_7
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

3880..4410
-----------------
DNA (531bp)
protein (177aa)
polyhydroxyalkanoate synthesis repressor PhaR Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Polyhydroxyalkanoate synthesis repressor PhaR id=2278566 bin=GWA2_Elusimicrobia_69_24 species=Sphingobium sp. SYK-6 genus=Sphingobium taxon_order=Sphingomonadales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWA2_Elusimicrobia_69_24 organism_group=Elusimicrobia
hypothetical protein
13_1_40cm_4_scaffold_5582_8
CSP1_6_Rokubacteria, Rokubacteria, Bacteria

Not on your lists

comp(4477..4920)
-----------------
DNA (444bp)
protein (148aa)
id=14626096 bin=bin7_NC10_sister tax=bin7_NC10_sister organism_group=NC10
Tax=CSP1_6_Rokubacteria
13_1_40cm_4_scaffold_5582_9
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

5079..6248
-----------------
DNA (1170bp)
protein (390aa)
long-chain fatty acid CoA ligase (AMP-binding) Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
AMP-dependent synthetase and ligase id=2278568 bin=GWA2_Elusimicrobia_69_24 species=Caldithrix abyssi genus=Caldithrix taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Elusimicrobia_69_24 organism_group=Elusimicrobia
AMP-dependent synthetase and ligase
13_1_40cm_4_scaffold_5582_10
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

6218..6829
-----------------
DNA (612bp)
protein (204aa)
long-chain fatty acid CoA ligase (AMP-binding) Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
AMP-dependent synthetase and ligase id=2278568 bin=GWA2_Elusimicrobia_69_24 species=Caldithrix abyssi genus=Caldithrix taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Elusimicrobia_69_24 organism_group=Elusimicrobia
fadD2; putative long-chain-fatty-acid--CoA ligase
13_1_40cm_4_scaffold_5582_11
GWA2_Elusimicrobia_69_24_curated, Elusimicrobia, Bacteria

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6826..7593
-----------------
DNA (768bp)
protein (256aa)
Short-chain dehydrogenase/reductase SDR id=2278571 bin=GWA2_Elusimicrobia_69_24 species=Conexibacter woesei genus=Conexibacter taxon_order=Solirubrobacterales taxon_class=Actinobacteria phylum=Actinobacteria tax=GWA2_Elusimicrobia_69_24 organism_group=Elusimicrobia
short-chain dehydrogenase/reductase SDR Tax=GWA2_Elusimicrobia_69_24_curated
short-chain dehydrogenase/reductase SDR
13_1_40cm_4_scaffold_5582_12
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

7905..8756
-----------------
DNA (852bp)
protein (284aa)
zinc-containing alcohol dehydrogenase Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Alcohol dehydrogenase, zinc-containing id=3479510 bin=GWC2_Methylomirabilis_70_16 species=Pelobacter carbinolicus genus=Pelobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
alcohol dehydrogenase GroES domain-containing protein
13_1_40cm_4_scaffold_5582_13
GWC2_Nitrospirae_42_7_curated, Nitrospirae, Bacteria

Not on your lists

8958..10415
-----------------
DNA (1458bp)
protein (486aa)
polysaccharide biosynthesis protein Tax=GWC2_Nitrospirae_42_7_curated
Polysaccharide biosynthesis protein id=3804909 bin=GWC2_CP_Nitrospirae-rel_42_7 species=Desulfovibrio africanus genus=Desulfovibrio taxon_order=Desulfovibrionales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_CP_Nitrospirae-rel_42_7 organism_group=Nitrospirae
membrane protein
13_1_40cm_4_scaffold_5582_14
GWF2_Verrucomicrobia_62_7_curated, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

10396..11688
-----------------
DNA (1293bp)
protein (431aa)
hypothetical protein n=1 Tax=Stenotrophomonas maltophilia RepID=UPI000302EA4A
glycosyl transferase family protein Tax=GWF2_Verrucomicrobia_62_7_curated
type 11 methyltransferase
13_1_40cm_4_scaffold_5582_15
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

11882..12499
-----------------
DNA (618bp)
protein (206aa)
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Uncharacterized protein id=4306179 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=Magnetococcus taxon_order=Magnetococcales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein
13_1_40cm_4_scaffold_5582_16
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(12507..12872)
-----------------
DNA (366bp)
protein (122aa)
7-cyano-7-deazaguanine reductase; K09457 7-cyano-7-deazaguanine reductase [EC:1.7.1.13] Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
NADPH-dependent 7-cyano-7-deazaguanine reductase id=4306181 bin=GWA2_Methylomirabilis_73_35 species=Kyrpidia tusciae genus=Kyrpidia taxon_order=Bacillales taxon_class=Bacilli phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
7-cyano-7-deazaguanine reductase
13_1_40cm_4_scaffold_5582_17
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(12891..13787)
-----------------
DNA (897bp)
protein (299aa)
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
hypothetical protein id=14627552 bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Poribacteria tax=bin7_NC10_sister organism_group=NC10
hypothetical protein
13_1_40cm_4_scaffold_5582_18
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

13827..14906
-----------------
DNA (1080bp)
protein (360aa)
GTP-dependent nucleic acid-binding protein EngD; K06942 Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
GTP-binding protein YchF id=4306184 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=Chloroflexus taxon_order=Chloroflexales taxon_class=Chloroflexi phylum=Chloroflexi tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
GTP-dependent nucleic acid-binding protein EngD
13_1_40cm_4_scaffold_5582_19
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(14917..15939)
-----------------
DNA (1023bp)
protein (341aa)
uroporphyrinogen decarboxylase (URO-D); K01599 uroporphyrinogen decarboxylase [EC:4.1.1.37] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Uroporphyrinogen decarboxylase id=4306186 bin=GWA2_Methylomirabilis_73_35 species=Cupriavidus basilensis genus=Cupriavidus taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
uroporphyrinogen decarboxylase
13_1_40cm_4_scaffold_5582_20
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(15936..16790)
-----------------
DNA (855bp)
protein (285aa)
acyl dehydratase Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
MaoC-like dehydratase id=4306188 bin=GWA2_Methylomirabilis_73_35 species=Patulibacter medicamentivorans genus=Patulibacter taxon_order=Solirubrobacterales taxon_class=Actinobacteria phylum=Actinobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
MaoC domain-containing protein dehydratase
13_1_40cm_4_scaffold_5582_21
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(16787..18682)
-----------------
DNA (1896bp)
protein (632aa)
ferredoxin Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
ferredoxin id=14627556 bin=bin7_NC10_sister species=Thermacetogenium phaeum genus=Thermacetogenium taxon_order=Thermoanaerobacterales taxon_class=Clostridia phylum=Firmicutes tax=bin7_NC10_sister organism_group=NC10
metal-binding protein
13_1_40cm_4_scaffold_5582_22
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

18696..18866
-----------------
DNA (171bp)
protein (57aa)
hypothetical protein Tax=GWA2_Rokubacteria_73_35_curated
hypothetical protein id=4306247 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_40cm_4_scaffold_5582_23
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

18866..19537
-----------------
DNA (672bp)
protein (224aa)
amidase; K02433 aspartyl-tRNA(Asn)/glutamyl-tRNA (Gln) amidotransferase subunit A [EC:6.3.5.6 6.3.5.7] Tax=GWA2_Rokubacteria_73_35_curated
Amidase id=4306251 bin=GWA2_Methylomirabilis_73_35 species=Pseudonocardia dioxanivorans genus=Pseudonocardia taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
enantiomer-selective amidase
13_1_40cm_4_scaffold_5582_24
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

19515..20234
-----------------
DNA (720bp)
protein (240aa)
Amidase (EC:3.5.1.4); K02433 aspartyl-tRNA(Asn)/glutamyl-tRNA (Gln) amidotransferase subunit A [EC:6.3.5.6 6.3.5.7] Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
amidase (EC:3.5.1.4)
Amidase id=4306251 bin=GWA2_Methylomirabilis_73_35 species=Pseudonocardia dioxanivorans genus=Pseudonocardia taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_40cm_4_scaffold_5582_25
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

20254..20634
-----------------
DNA (381bp)
protein (127aa)
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
hypothetical protein id=4306254 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_40cm_4_scaffold_5582_26
CSP1_6_Rokubacteria, Rokubacteria, Bacteria

Not on your lists

20637..20990
-----------------
DNA (354bp)
protein (118aa)
hypothetical protein id=14627576 bin=bin7_NC10_sister species=Sorangium cellulosum genus=Sorangium taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=bin7_NC10_sister organism_group=NC10
hypothetical protein Tax=CSP1_6_Rokubacteria
hypothetical protein
13_1_40cm_4_scaffold_5582_27
Candidatus Entotheonella sp. TSY2, Candidatus Entotheonella, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21028..21741
-----------------
DNA (714bp)
protein (238aa)
Putative merR-family transcriptional regulator n=1 Tax=alpha proteobacterium JLT2015 RepID=M2U6V5_9PROT
Uncharacterized protein {ECO:0000313|EMBL:ETX04304.1}; TaxID=1429439 species="Bacteria; Proteobacteria; Deltaproteobacteria; Candidatus Entotheonella.;" source="Candidatus Entotheonella sp. TSY2.;"
MerR family transcriptional regulator
13_1_40cm_4_scaffold_5582_28
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(21746..21925)
-----------------
DNA (180bp)
protein (60aa)
Putative uncharacterized protein id=4306265 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
Putative uncharacterized protein Tax=GWA2_Rokubacteria_73_35_curated
hypothetical protein
13_1_40cm_4_scaffold_5582_29
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(21949..22131)
-----------------
DNA (183bp)
protein (61aa)
id=3741115 Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
id=3741115 bin=GWF2_Methylomirabilis_70_14 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_40cm_4_scaffold_5582_30
GWC2_Rokubacteria_70_16_curated, Rokubacteria, Bacteria

Not on your lists

comp(22132..22245)
-----------------
DNA (114bp)
protein (38aa)
id=2591429 bin=GWC2_Methylomirabilis_70_16 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
id=2591429 Tax=GWC2_Rokubacteria_70_16_curated
Displaying items 1-30 of 35 in total

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