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13_1_40cm_4_scaffold_56

Search features with annotation key words

Displaying 30 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_40cm_4_scaffold_56_1
RBG_19FT_COMBO_Armatimonadetes_69_19_curated, Armatimonadetes, Bacteria

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3..563
DNA (561bp) protein (187aa)
ABC transporter permease; K02025 multiple sugar transport system permease protein id=24429355 bin=RBG_19FT_COMBO_GAL15_69_19 species=Herbaspirillum sp. JC206 genus=Herbaspirillum taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=RBG_19FT_COMBO_GAL15_69_19 organism_group=GAL15 organism_desc=Curation Candidate
ABC transporter permease; K02025 multiple sugar transport system permease protein Tax=RBG_19FT_COMBO_Armatimonadetes_69_19_curated
binding-protein-dependent transport system inner membrane protein
13_1_40cm_4_scaffold_56_2
RBG_16_Armatimonadetes_67_12_curated, Armatimonadetes, Bacteria

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560..1396
DNA (837bp) protein (279aa)
binding-protein-dependent transport system inner membrane protein; K02026 multiple sugar transport system permease protein Tax=RBG_16_Armatimonadetes_67_12_curated
binding-protein-dependent transport system inner membrane protein; K02026 multiple sugar transport system permease protein id=24429354 bin=RBG_19FT_COMBO_GAL15_69_19 species=unknown genus=Anaeromyxobacter taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=RBG_19FT_COMBO_GAL15_69_19 organism_group=GAL15 organism_desc=Curation Candidate
ycjP; ABC transporter permease
13_1_40cm_4_scaffold_56_3
Mizugakiibacter sediminis, Mizugakiibacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1431..2669
DNA (1239bp) protein (413aa)
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:GAN45139.1}; TaxID=1475481 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Mizugakiibacter.;" source="Mizugakiibact
13_1_40cm_4_scaffold_56_4
RBG_16_Armatimonadetes_67_12_curated, Armatimonadetes, Bacteria

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2764..4182
DNA (1419bp) protein (473aa)
extracellular solute-binding protein; K02027 multiple sugar transport system substrate-binding protein id=24429358 bin=RBG_19FT_COMBO_GAL15_69_19 species=Amycolatopsis sp. ATCC 39116 genus=Amycolatopsis taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=RBG_19FT_COMBO_GAL15_69_19 organism_group=GAL15 organism_desc=Curation Candidate
sugar ABC transporter periplasmic ligand binding protein; K02027 multiple sugar transport system substrate-binding protein Tax=RBG_16_Armatimonadetes_67_12_curated
sugar ABC transporter periplasmic ligand binding protein
13_1_40cm_4_scaffold_56_5
RBG_16_Acidobacteria_68_9_curated, Acidobacteria, Bacteria

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4204..5670
DNA (1467bp) protein (489aa)
mmsA; methylmalonate-semialdehyde dehydrogenase (EC:1.2.1.27); K00140 malonate-semialdehyde dehydrogenase (acetylating) / methylmalonate-semialdehyde dehydrogenase [EC:1.2.1.18 1.2.1.27] Tax=RBG_16_Ac
mmsA; methylmalonate-semialdehyde dehydrogenase (EC:1.2.1.27)
Methylmalonate-semialdehyde dehydrogenase n=1 Tax=Sorangium cellulosum (strain So ce56) RepID=A9GKD5_SORC5
13_1_40cm_4_scaffold_56_6
unknown

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comp(5719..6258)
DNA (540bp) protein (180aa)

This feature has no annotations

13_1_40cm_4_scaffold_56_7
R_Gemmatimonadetes_71_11, Gemmatimonadetes, Bacteria

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comp(6255..6800)
DNA (546bp) protein (182aa)
Putative Kinase inhibitor YbhB n=1 Tax=Candidatus Nitrospira defluvii RepID=D8PJC3_9BACT
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Gemmatimonadetes_71_11_curated
putative Kinase inhibitor YbhB
13_1_40cm_4_scaffold_56_8
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

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7046..9367
DNA (2322bp) protein (774aa)
OmpR family two-component response regulator n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A8B6_GEMAT
two-component histidine kinase Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
ATP-binding region ATPase domain protein
13_1_40cm_4_scaffold_56_9
RLO_Nitrospinae_39_15, Nitrospinae, Bacteria

Not on your lists

9448..10359
DNA (912bp) protein (304aa)
aguB; N-carbamoylputrescine amidase; K12251 N-carbamoylputrescine amidase [EC:3.5.1.53] Tax=RifCSPlowO2_12_Nitrospinae_39_15_curated
Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase id=2854538 bin=GWC2_Deltaproteobacteria_66_88 species=Singulisphaera acidiphila genus=Singulisphaera taxon_order=Planctomycetales taxon_class=Planctomycetia phylum=Planctomycetes tax=GWC2_Deltaproteobacteria_66_88 organism_group=Deltaproteobacteria
hydrolase
13_1_40cm_4_scaffold_56_10
RBG_16_Deltaproteobacteria_58_17_curated, Deltaproteobacteria, Proteobacteria, Bacteria

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10359..11441
DNA (1083bp) protein (361aa)
peptidylarginine deiminase-like protein (EC:3.5.3.12); K10536 agmatine deiminase [EC:3.5.3.12] Tax=RBG_16_Deltaproteobacteria_58_17_curated
peptidylarginine deiminase-like protein (EC:3.5.3.12)
Peptidylarginine deiminase-like enzyme id=4332731 bin=GWA2_Deltaproteo_65_63 species=Candidatus Chloracidobacterium thermophilum genus=Candidatus Chloracidobacterium taxon_order=unknown taxon_class=unknown phylum=Acidobacteria tax=GWA2_Deltaproteo_65_63 organism_group=Deltaproteobacteria
13_1_40cm_4_scaffold_56_11
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

Not on your lists

11438..11833
DNA (396bp) protein (132aa)
methylmalonyl-CoA epimerase; K05606 methylmalonyl-CoA/ethylmalonyl-CoA epimerase [EC:5.1.99.1] Tax=RBG_16_Gemmatimonadetes_66_8_curated
YraH id=2316596 bin=GWA2_Ignavibacteria_55_11 species=Bacillus sp. NRRL B-14911 genus=Bacillus taxon_order=Bacillales taxon_class=Bacilli phylum=Firmicutes tax=GWA2_Ignavibacteria_55_11 organism_group=Ignavibacteria organism_desc=Closely related to GWC2 genome
Glyoxalase-like domain protein
13_1_40cm_4_scaffold_56_12
Cupriavidus sp. SK-3, Cupriavidus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11899..13212
DNA (1314bp) protein (438aa)
hypothetical protein n=1 Tax=Enterobacteriaceae bacterium LSJC7 RepID=UPI00036C17D0
ABC transporter substrate-binding protein {ECO:0000313|EMBL:KDP85952.1}; TaxID=1470558 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Cupriavidus.;" source="
oppA; periplasmic oligopeptide-binding protein precursor OppA
13_1_40cm_4_scaffold_56_13
Anaeromyxobacter dehalogenans, Anaeromyxobacter, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13209..14873
DNA (1665bp) protein (555aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; Flags: Precursor;; TaxID=290397 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Cy
Periplasmic sensor signal transduction histidine kinase n=1 Tax=Anaeromyxobacter dehalogenans (strain 2CP-C) RepID=Q2IEU8_ANADE
periplasmic sensor signal transduction histidine kinase
13_1_40cm_4_scaffold_56_14
RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated, Acidobacteria, Bacteria

Not on your lists

14870..16252
DNA (1383bp) protein (461aa)
Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Ammonifex degensii (strain DSM 10501 / KC4) RepID=C9RAR8_AMMDK
Fis family transcriptional regulator; K13599 two-component system, NtrC family, nitrogen regulation response regulator NtrX Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated
two component, sigma54 specific, transcriptional regulator, Fis family
13_1_40cm_4_scaffold_56_15
Nostoc punctiforme, Nostoc, Nostocales, Cyanobacteria, Bacteria

Not on your lists

16427..17194
DNA (768bp) protein (256aa)
Tetratricopeptide TPR_4 n=1 Tax=Nostoc punctiforme (strain ATCC 29133 / PCC 73102) RepID=B2IUS3_NOSP7
hypothetical protein
Tetratricopeptide TPR_4 {ECO:0000313|EMBL:ACC84316.1}; TaxID=63737 species="Bacteria; Cyanobacteria; Nostocales; Nostocaceae; Nostoc.;" source="Nostoc punctiforme (strain ATCC 29133 / PCC 73102).;"
13_1_40cm_4_scaffold_56_16
Enhygromyxa salina, Enhygromyxa, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17244..18584)
DNA (1341bp) protein (447aa)
Acyltransferase domain protein n=1 Tax=Plesiocystis pacifica SIR-1 RepID=A6G1V1_9DELT
1-acyl-sn-glycerol-3-phosphate acyltransferase {ECO:0000313|EMBL:KIG17790.1}; TaxID=215803 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Enhygromyxa.;" source="Enhygromyxa sali
acyltransferase domain-containing protein
13_1_40cm_4_scaffold_56_17
Anaeromyxobacter dehalogenans, Anaeromyxobacter, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18581..19861)
DNA (1281bp) protein (427aa)
Major facilitator superfamily MFS_1 n=1 Tax=Anaeromyxobacter dehalogenans (strain 2CP-1 / ATCC BAA-258) RepID=B8J9R1_ANAD2
major facilitator superfamily protein
Major facilitator superfamily MFS_1 {ECO:0000313|EMBL:ACL67449.1}; TaxID=455488 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Cystobacterineae; Anaeromyxobacteraceae; Anaeromyx
13_1_40cm_4_scaffold_56_18
Rhodothermus marinus, Rhodothermus, Bacteroidetes Order II. Incertae sedis, Bacteroidetes, Bacteria

Not on your lists

comp(19840..22041)
DNA (2202bp) protein (734aa)
dipeptidyl-peptidase IV (EC:3.4.14.5)
Dipeptidyl-peptidase IV {ECO:0000313|EMBL:AEN73784.1}; EC=3.4.14.5 {ECO:0000313|EMBL:AEN73784.1};; Flags: Precursor;; TaxID=762570 species="Bacteria; Bacteroidetes; Bacteroidetes Order II. Incertae se
Dipeptidyl-peptidase IV n=1 Tax=Rhodothermus marinus SG0.5JP17-172 RepID=G2SI26_RHOMR
13_1_40cm_4_scaffold_56_19
Spirosoma linguale, Spirosoma, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

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22065..23657
DNA (1593bp) protein (531aa)
Mannitol dehydrogenase domain protein n=1 Tax=Spirosoma linguale (strain ATCC 33905 / DSM 74 / LMG 10896) RepID=D2QL58_SPILD
mannitol dehydrogenase domain-containing protein
Mannitol dehydrogenase domain protein {ECO:0000313|EMBL:ADB37297.1}; TaxID=504472 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Spirosoma.;" source="Spirosoma linguale (st
13_1_40cm_4_scaffold_56_20
RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated, Acidobacteria, Bacteria

Not on your lists

23654..24337
DNA (684bp) protein (228aa)
2-dehydro-3-deoxyphosphogluconate aldolase/4-hydroxy-2-oxoglutarate aldolase; K01625 2-dehydro-3-deoxyphosphogluconate aldolase / 4-hydroxy-2-oxoglutarate aldolase [EC:4.1.2.14 4.1.3.16] Tax=RIFCSPLOW
2-dehydro-3-deoxyphosphogluconate aldolase/4-hydroxy-2-oxoglutarate aldolase; K01625 2-dehydro-3-deoxyphosphogluconate aldolase / 4-hydroxy-2-oxoglutarate aldolase [EC:4.1.2.14 4.1.3.16] id=12556858 bin=CNBR_ACIDO species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Bacteroidetes tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
2-dehydro-3-deoxyphosphogluconate aldolase/4-hydroxy-2-oxoglutarate aldolase
13_1_40cm_4_scaffold_56_21
RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated, Acidobacteria, Bacteria

Not on your lists

24334..25326
DNA (993bp) protein (331aa)
PfkB domain-containing protein; K00874 2-dehydro-3-deoxygluconokinase [EC:2.7.1.45] Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated
PfkB domain-containing protein; K00874 2-dehydro-3-deoxygluconokinase [EC:2.7.1.45] id=12556857 bin=CNBR_ACIDO species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Bacteroidetes tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
PfkB domain-containing protein
13_1_40cm_4_scaffold_56_22
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

Not on your lists

25323..26363
DNA (1041bp) protein (347aa)
Mannonate dehydratase {ECO:0000256|HAMAP-Rule:MF_00106, ECO:0000256|SAAS:SAAS00189414}; EC=4.2.1.8 {ECO:0000256|HAMAP-Rule:MF_00106, ECO:0000256|SAAS:SAAS00189414};; D-mannonate hydro-lyase {ECO:00002
mannonate dehydratase n=1 Tax=Comamonas sp. B-9 RepID=UPI000395AA7A
Mannonate dehydratase
13_1_40cm_4_scaffold_56_23
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

Not on your lists

26360..27631
DNA (1272bp) protein (424aa)
major facilitator superfamily MFS_1
Major facilitator superfamily MFS_1 {ECO:0000313|EMBL:AHG87912.1}; TaxID=861299 species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.;"
anion:cation symporter family protein; K08191 MFS transporter, ACS family, hexuronate transporter id=24430143 bin=RBG_19FT_COMBO_Aminicenantes_rel_58_17_partial species=Nafulsella turpanensis genus=Nafulsella taxon_order=Cytophagales taxon_class=Cytophagia phylum=Bacteroidetes tax=RBG_19FT_COMBO_Aminicenantes_rel_58_17_partial organism_group=OP8 (Aminicenantes) organism_desc=Curation Candidate
13_1_40cm_4_scaffold_56_24
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

Not on your lists

27652..28551
DNA (900bp) protein (300aa)
hypothetical protein n=1 Tax=Acidobacteriaceae bacterium KBS 96 RepID=UPI00036CC32D
Xylose isomerase domain-containing protein TIM barrel
Xylose isomerase domain-containing protein TIM barrel {ECO:0000313|EMBL:AHG93149.1}; TaxID=861299 species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.;"
13_1_40cm_4_scaffold_56_25
Rhodothermus marinus, Rhodothermus, Bacteroidetes Order II. Incertae sedis, Bacteroidetes, Bacteria

Not on your lists

28595..29197
DNA (603bp) protein (201aa)
Uncharacterized protein n=1 Tax=Rhodothermus marinus (strain ATCC 43812 / DSM 4252 / R-10) RepID=D0MJG2_RHOM4
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACY48620.1}; Flags: Precursor;; TaxID=518766 species="Bacteria; Bacteroidetes; Bacteroidetes Order II. Incertae sedis; Rhodothermaceae; Rhodothermus.;" source
13_1_40cm_4_scaffold_56_26
Rhodothermus marinus, Rhodothermus, Bacteroidetes Order II. Incertae sedis, Bacteroidetes, Bacteria

Not on your lists

29194..30894
DNA (1701bp) protein (567aa)
Glucose-methanol-choline oxidoreductase n=1 Tax=Rhodothermus marinus (strain ATCC 43812 / DSM 4252 / R-10) RepID=D0MJG3_RHOM4
glucose-methanol-choline oxidoreductase
Glucose-methanol-choline oxidoreductase {ECO:0000313|EMBL:ACY48621.1}; TaxID=518766 species="Bacteria; Bacteroidetes; Bacteroidetes Order II. Incertae sedis; Rhodothermaceae; Rhodothermus.;" source="R
13_1_40cm_4_scaffold_56_27
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

Not on your lists

30917..31675
DNA (759bp) protein (253aa)
hypothetical protein n=1 Tax=Spirosoma luteum RepID=UPI00036AF432
protein of unknown function DUF1080
Uncharacterized protein {ECO:0000313|EMBL:AHG93132.1}; TaxID=861299 species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.;"
13_1_40cm_4_scaffold_56_28
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

Not on your lists

31672..32985
DNA (1314bp) protein (438aa)
Oxidoreductase domain protein n=1 Tax=Spirosoma linguale (strain ATCC 33905 / DSM 74 / LMG 10896) RepID=D2QTP2_SPILD
oxidoreductase domain protein
Oxidoreductase domain protein {ECO:0000313|EMBL:AHG89161.1}; TaxID=861299 species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.;"
13_1_40cm_4_scaffold_56_29
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

Not on your lists

32990..34399
DNA (1410bp) protein (470aa)
Uronate isomerase {ECO:0000256|HAMAP-Rule:MF_00675, ECO:0000256|SAAS:SAAS00013440}; EC=5.3.1.12 {ECO:0000256|HAMAP-Rule:MF_00675, ECO:0000256|SAAS:SAAS00013438};; Glucuronate isomerase {ECO:0000256|HA
Glucuronate isomerase n=1 Tax=Rhodothermus marinus SG0.5JP17-172 RepID=G2SJM9_RHOMR
Glucuronate isomerase
13_1_40cm_4_scaffold_56_30
Candidatus Solibacter usitatus, Candidatus Solibacter, Solibacterales, Solibacteres, Acidobacteria, Bacteria

Not on your lists

34396..35109
DNA (714bp) protein (238aa)
galactokinase (EC:2.7.1.6)
Galactokinase {ECO:0000313|EMBL:ABJ87514.1}; EC=2.7.1.6 {ECO:0000313|EMBL:ABJ87514.1};; TaxID=234267 species="Bacteria; Acidobacteria; Solibacteres; Solibacterales; Solibacteraceae; Candidatus Solibac
Galactokinase n=1 Tax=Solibacter usitatus (strain Ellin6076) RepID=Q01S56_SOLUE
Displaying 30 items

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