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13_1_40cm_4_scaffold_5842

Search features with annotation key words

Displaying items 1-30 of 31 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_40cm_4_scaffold_5842_1
BJP_S1_SUB10_Methylophilales_55_32, Methylophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2..394)
DNA (393bp) protein (131aa)
Uncharacterized protein n=1 Tax=Halorubrum tebenquichense DSM 14210 RepID=M0DEF0_9EURY
Tax=BJP_S1_SUB10_Methylophilales_55_32
13_1_40cm_4_scaffold_5842_2
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

comp(391..2313)
DNA (1923bp) protein (641aa)
glucosamine-6-phosphate deaminase-like protein; K02564 glucosamine-6-phosphate deaminase [EC:3.5.99.6] Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
Putative glucosamine-6-phosphate isomerase n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A967_GEMAT
glucosamine-6-phosphate isomerase
13_1_40cm_4_scaffold_5842_3
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

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2457..3674
DNA (1218bp) protein (406aa)
Putative integral membrane sensor signal transduction histidine kinase n=1 Tax=Desulfovibrio gigas DSM 1382 = ATCC 19364 RepID=T2GEP3_DESGI
PAS/PAC sensor signal transduction histidine kinase Tax=RBG_16_Gemmatimonadetes_66_8_curated
putative integral membrane sensor signal transduction histidine kinase
13_1_40cm_4_scaffold_5842_4
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

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3688..4227
DNA (540bp) protein (180aa)
hypothetical protein n=1 Tax=Zavarzinella formosa RepID=UPI00031DFAC0
peptidase M28 Tax=RBG_16_Gemmatimonadetes_66_8_curated
aminopeptidase
13_1_40cm_4_scaffold_5842_5
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

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4196..5227
DNA (1032bp) protein (344aa)
hypothetical protein n=1 Tax=Zavarzinella formosa RepID=UPI00031DFAC0
peptidase M28 Tax=RBG_16_Gemmatimonadetes_66_8_curated
putative plasma glutamate carboxypeptidase
13_1_40cm_4_scaffold_5842_6
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

Not on your lists

comp(5240..5725)
DNA (486bp) protein (162aa)
Glyoxalase n=1 Tax=Hyphomicrobium nitrativorans NL23 RepID=V5SBI4_9RHIZ
glyoxalase/bleomycin resistance protein/dioxygenase; K07104 Tax=RBG_16_Gemmatimonadetes_66_8_curated
glyoxalase
13_1_40cm_4_scaffold_5842_7
R_Acidobacteria_67_21, Acidobacteria, Bacteria

Not on your lists

5764..7344
DNA (1581bp) protein (527aa)
delta-1-pyrroline-5-carboxylate dehydrogenase (EC:1.5.1.12); K00294 1-pyrroline-5-carboxylate dehydrogenase [EC:1.5.1.12] Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_67_21_curated
delta-1-pyrroline-5-carboxylate dehydrogenase (EC:1.5.1.12)
Delta-1-pyrroline-5-carboxylate dehydrogenase n=1 Tax=Rhodothermus marinus SG0.5JP17-172 RepID=G2SEY1_RHOMR
13_1_40cm_4_scaffold_5842_8
RLO_Nitrospinae_39_15, Nitrospinae, Bacteria

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7341..7952
DNA (612bp) protein (204aa)
Uncharacterized protein n=1 Tax=Nitrospina gracilis 3/211 RepID=M1YKB3_9BACT
hypothetical protein Tax=RifCSPlowO2_12_Nitrospinae_39_15_curated
13_1_40cm_4_scaffold_5842_9
R_Gemmatimonadetes_71_11, Gemmatimonadetes, Bacteria

Not on your lists

comp(8010..8186)
DNA (177bp) protein (59aa)
Uncharacterized protein n=1 Tax=uncultured bacterium RepID=K2B6K0_9BACT
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Gemmatimonadetes_71_11_curated
hypothetical protein
13_1_40cm_4_scaffold_5842_10
R_Ignavibacteria_55_14, Ignavibacteriales, Ignavibacteria, Ignavibacteriae, Bacteria

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8631..10169
DNA (1539bp) protein (513aa)
Putative uncharacterized protein id=2732276 bin=GWC2_Ignavibacteria_56_12 species=Candidatus Koribacter versatilis genus=Candidatus Koribacter taxon_order=unknown taxon_class=unknown phylum=Acidobacteria tax=GWC2_Ignavibacteria_56_12 organism_group=Ignavibacteria organism_desc=Larger genome
hypothetical protein; K06888 Tax=RIFCSPLOWO2_02_FULL_Ignavibacteria_55_14_curated
thioredoxin domain-containing protein
13_1_40cm_4_scaffold_5842_11
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

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10243..10791
DNA (549bp) protein (183aa)
RNA polymerase ECF-type sigma factor n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A5K6_GEMAT
RNA polymerase sigma factor, sigma-70 family
RNA polymerase sigma factor, sigma-70 family {ECO:0000313|EMBL:AHG89917.1}; TaxID=861299 species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.;"
13_1_40cm_4_scaffold_5842_12
GWC2_Gemmatimonadetes_71_10_curated, Gemmatimonadetes, Bacteria

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10788..11357
DNA (570bp) protein (190aa)
hypothetical protein n=1 Tax=Desulfovibrio oxyclinae RepID=UPI000375EB3A
glycoside hydrolase family protein Tax=GWC2_Gemmatimonadetes_71_10_curated
isoamylase N-terminal domain-containing protein
13_1_40cm_4_scaffold_5842_13
GWC2_Gemmatimonadetes_71_10_curated, Gemmatimonadetes, Bacteria

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11354..12022
DNA (669bp) protein (223aa)
hypothetical protein
hypothetical protein Tax=GWC2_Gemmatimonadetes_71_10_curated
13_1_40cm_4_scaffold_5842_14
unknown

Not on your lists

12140..12355
DNA (216bp) protein (72aa)

This feature has no annotations

13_1_40cm_4_scaffold_5842_15
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

Not on your lists

comp(12352..13584)
DNA (1233bp) protein (411aa)
arginine biosynthesis bifunctional protein ArgJ (EC:2.3.1.1); K00620 glutamate N-acetyltransferase / amino-acid N-acetyltransferase [EC:2.3.1.35 2.3.1.1] Tax=RBG_16_Gemmatimonadetes_66_8_curated
rca:Rcas_3355 arginine biosynthesis bifunctional protein ArgJ (EC:2.3.1.1); K00620 glutamate N-acetyltransferase / amino-acid N-acetyltransferase [EC:2.3.1.35 2.3.1.1] id=1246557 bin=RBG9 species=RBG9 genus=RBG9 taxon_order=RBG9 taxon_class=RBG9 phylum=Chloroflexi tax=RBG9 organism_group=Chloroflexi
arginine biosynthesis bifunctional protein ArgJ (EC:2.3.1.1)
13_1_40cm_4_scaffold_5842_16
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

13671..14936
DNA (1266bp) protein (422aa)
Uncharacterized protein n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1AA53_GEMAT
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
Tetratricopeptide TPR_1 repeat-containing protein
13_1_40cm_4_scaffold_5842_17
uncultured Acidobacteria bacterium, Acidobacteria, Bacteria

Not on your lists

comp(14872..15258)
DNA (387bp) protein (129aa)
DoxX family protein n=1 Tax=uncultured Acidobacteria bacterium RepID=H5SIV8_9BACT
DoxX family protein {ECO:0000313|EMBL:BAL56094.1}; TaxID=171953 species="Bacteria; Acidobacteria; environmental samples.;" source="uncultured Acidobacteria bacterium.;"
DoxX family protein
13_1_40cm_4_scaffold_5842_18
unknown

Not on your lists

comp(15255..15575)
DNA (321bp) protein (107aa)

This feature has no annotations

13_1_40cm_4_scaffold_5842_19
unknown

Not on your lists

comp(15572..16714)
DNA (1143bp) protein (381aa)

This feature has no annotations

13_1_40cm_4_scaffold_5842_20
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

Not on your lists

comp(16806..17285)
DNA (480bp) protein (160aa)
Cyclic nucleotide-binding domain-containing protein n=1 Tax=Corallococcus coralloides (strain ATCC 25202 / DSM 2259 / NBRC 100086 / M2) RepID=H8MHI7_CORCM
cyclic nucleotide-binding domain-containing protein Tax=RBG_16_Gemmatimonadetes_66_8_curated
cyclic nucleotide-binding domain-containing protein
13_1_40cm_4_scaffold_5842_21
GWC2_Gemmatimonadetes_71_10_curated, Gemmatimonadetes, Bacteria

Not on your lists

17301..17831
DNA (531bp) protein (177aa)
pgsA2; CDP-alcohol phosphatidyltransferase; K00995 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase [EC:2.7.8.5] Tax=GWC2_Gemmatimonadetes_71_10_curated
CDP-alcohol phosphatidyltransferase family protein n=1 Tax=Corallococcus coralloides (strain ATCC 25202 / DSM 2259 / NBRC 100086 / M2) RepID=H8MUZ5_CORCM
pgsA2; CDP-alcohol phosphatidyltransferase
13_1_40cm_4_scaffold_5842_22
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

Not on your lists

17831..18355
DNA (525bp) protein (175aa)
Tax=RBG_16_Gemmatimonadetes_66_8_curated
13_1_40cm_4_scaffold_5842_23
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

Not on your lists

18357..18767
DNA (411bp) protein (137aa)
OsmC family protein n=1 Tax=Oscillochloris trichoides DG-6 RepID=E1IEP3_9CHLR
hypothetical protein; K07397 putative redox protein Tax=RBG_16_Gemmatimonadetes_66_8_curated
yhfA; protein yhfA
13_1_40cm_4_scaffold_5842_24
R_Gemmatimonadetes_71_11, Gemmatimonadetes, Bacteria

Not on your lists

18838..19299
DNA (462bp) protein (154aa)
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Gemmatimonadetes_71_11_curated
13_1_40cm_4_scaffold_5842_25
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

comp(19356..19625)
DNA (270bp) protein (90aa)
Uncharacterized protein n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1AA48_GEMAT
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
hypothetical protein
13_1_40cm_4_scaffold_5842_26
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

19818..20135
DNA (318bp) protein (106aa)
hypothetical protein
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
13_1_40cm_4_scaffold_5842_27
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

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20132..20788
DNA (657bp) protein (219aa)
DSBA oxidoreductase n=1 Tax=Nitrosopumilus maritimus (strain SCM1) RepID=A9A5N9_NITMS id=5103511 bin=GW2011_AR20_complete species=GW2011_AR20 genus=GW2011_AR20 taxon_order=GW2011_AR20 taxon_class=GW2011_AR20 phylum=Archaeon tax=GW2011_AR20_complete organism_group=Woesearchaeota organism_desc=GWA2_A_30_20A_AR20 Complete genome
putative oxidoreductase Tax=RBG_16_Gemmatimonadetes_66_8_curated
putative oxidoreductase
13_1_40cm_4_scaffold_5842_28
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

Not on your lists

20785..21216
DNA (432bp) protein (144aa)
vitamin K epoxide reductase Tax=RBG_16_Gemmatimonadetes_66_8_curated
Vitamin K epoxide reductase
Vitamin K epoxide reductase id=4216065 bin=GWC2_Chloroflexi_49_37 species=RBG9 genus=RBG9 taxon_order=RBG9 taxon_class=RBG9 phylum=Chloroflexi tax=GWC2_Chloroflexi_49_37 organism_group=Chloroflexi organism_desc=Good +; Candidate for curation
13_1_40cm_4_scaffold_5842_29
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

21198..23111
DNA (1914bp) protein (638aa)
Probable potassium transport system protein kup n=1 Tax=Myxococcus sp. (contaminant ex DSM 436) RepID=U2SH89_9DELT
kup; potassium uptake protein; K03549 KUP system potassium uptake protein Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
potassium uptake protein
13_1_40cm_4_scaffold_5842_30
RLO_PLX_64_10, Bacteria

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comp(23118..25199)
DNA (2082bp) protein (694aa)
acetate--CoA ligase Tax=RIFCSPLOWO2_12_FULL_PLX_64_10_curated
Acetyl-coenzyme A synthetase id=4380013 bin=GWA2_Methylomirabilis_73_35 species=Acidothermus cellulolyticus genus=Acidothermus taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
AMP-dependent synthetase and ligase
Displaying items 1-30 of 31 in total

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