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13_1_40cm_4_scaffold_6015

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Displaying 25 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_40cm_4_scaffold_6015_1
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(1..234)
DNA (234bp) protein (78aa)
rod shape-determining protein RodA; K05837 rod shape determining protein RodA Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
Rod shape-determining protein RodA id=4317188 bin=GWA2_Methylomirabilis_73_35 species=Desulfarculus baarsii genus=Desulfarculus taxon_order=Desulfarculales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_40cm_4_scaffold_6015_2
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(234..2051)
DNA (1818bp) protein (606aa)
mrdA; penicillin-binding protein 2 Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Cell elongation specific D,D-transpeptidase id=4317187 bin=GWA2_Methylomirabilis_73_35 species=Syntrophus aciditrophicus genus=Syntrophus taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
mrdA; penicillin-binding protein 2
13_1_40cm_4_scaffold_6015_3
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(2048..2548)
DNA (501bp) protein (167aa)
hypothetical protein; K03571 rod shape-determining protein MreD Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Putative uncharacterized protein id=4317186 bin=GWA2_Methylomirabilis_73_35 species=Moorella thermoacetica genus=Moorella taxon_order=Thermoanaerobacterales taxon_class=Clostridia phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
Rod shape-determining protein MreD
13_1_40cm_4_scaffold_6015_4
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(2548..3384)
DNA (837bp) protein (279aa)
Cell shape-determining protein MreC id=4317185 bin=GWA2_Methylomirabilis_73_35 species=uncultured bacterium 293 genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
putative cell shape-determining protein MreC; K03570 rod shape-determining protein MreC Tax=GWA2_Rokubacteria_73_35_curated
rod shape-determining protein MreC
13_1_40cm_4_scaffold_6015_5
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(3416..4447)
DNA (1032bp) protein (344aa)
rod shape-determining protein MreB; K03569 rod shape-determining protein MreB and related proteins Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
mreB; Rod shape-determining protein mreB id=14626892 bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin7_NC10_sister organism_group=NC10
rod shape-determining protein MreB
13_1_40cm_4_scaffold_6015_6
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

4852..5628
DNA (777bp) protein (259aa)
thiol-disulfide oxidoreductase domain-containing protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
thiol-disulfide oxidoreductase domain-containing protein id=14627159 bin=bin7_NC10_sister species=Sulfitobacter sp. EE-36 genus=Sulfitobacter taxon_order=Rhodobacterales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=bin7_NC10_sister organism_group=NC10
thiol-disulfide oxidoreductase domain-containing protein
13_1_40cm_4_scaffold_6015_7
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

5582..5818
DNA (237bp) protein (79aa)
thiol-disulfide oxidoreductase domain-containing protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
thiol-disulfide oxidoreductase domain-containing protein id=14627159 bin=bin7_NC10_sister species=Sulfitobacter sp. EE-36 genus=Sulfitobacter taxon_order=Rhodobacterales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=bin7_NC10_sister organism_group=NC10
13_1_40cm_4_scaffold_6015_8
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

6043..6243
DNA (201bp) protein (67aa)
cold-shock DNA-binding domain-containing protein; K03704 cold shock protein (beta-ribbon, CspA family) Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Cold-shock DNA-binding domain protein id=4622878 bin=GWC2_Methylomirabilis_70_24 species=unknown genus=Anaeromyxobacter taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
cold-shock DNA-binding domain-containing protein
13_1_40cm_4_scaffold_6015_9
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

6328..7473
DNA (1146bp) protein (382aa)
DEAD/DEAH box helicase; K11927 ATP-dependent RNA helicase RhlE [EC:3.6.4.13] Tax=GWA2_Rokubacteria_73_35_curated
DEAD/DEAH box helicase domain protein id=2197702 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=Anaeromyxobacter taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
DEAD/DEAH box helicase
13_1_40cm_4_scaffold_6015_10
GWC2_Rokubacteria_70_16_curated, Rokubacteria, Bacteria

Not on your lists

7539..7739
DNA (201bp) protein (67aa)
cold-shock DNA-binding domain-containing protein; K03704 cold shock protein (beta-ribbon, CspA family) Tax=GWC2_Rokubacteria_70_16_curated
Cold-shock DNA-binding domain protein id=2197703 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=Anaeromyxobacter taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
cold-shock DNA-binding domain-containing protein
13_1_40cm_4_scaffold_6015_11
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(8346..8663)
DNA (318bp) protein (106aa)
helix-hairpin-helix repeat-containing competence protein ComEA; K02237 competence protein ComEA Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Competence protein ComEA helix-hairpin-helix repeat protein id=2197704 bin=GWA2_Methylomirabilis_73_35 species=Desulfococcus oleovorans genus=Desulfococcus taxon_order=Desulfobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
putative competence protein
13_1_40cm_4_scaffold_6015_12
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(8786..9091)
DNA (306bp) protein (102aa)
HNH endonuclease family protein id=2197705 bin=GWA2_Methylomirabilis_73_35 species=Desulfobacterium autotrophicum genus=Desulfobacterium taxon_order=Desulfobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
HNH endonuclease family protein Tax=GWA2_Rokubacteria_73_35_curated
HNH endonuclease family protein
13_1_40cm_4_scaffold_6015_13
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(9084..11042)
DNA (1959bp) protein (653aa)
ABC transporter ATP-binding protein with duplicated ATPase domains (EC:3.6.3.-)
ABC transporter-like protein; K06158 ATP-binding cassette, subfamily F, member 3 Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
ABC transporter related id=2197706 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=Eggerthella taxon_order=Coriobacteriales taxon_class=Actinobacteria phylum=Actinobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_40cm_4_scaffold_6015_14
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(11074..11466)
DNA (393bp) protein (131aa)
Pyridoxamine 5'-phosphate oxidase-related FMN-binding protein id=2197707 bin=GWA2_Methylomirabilis_73_35 species=Halalkalicoccus jeotgali genus=Halalkalicoccus taxon_order=Halobacteriales taxon_class=Halobacteria phylum=Euryarchaeota tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
pyridoxamine 5'-phosphate oxidase-related FMN-binding protein Tax=GWA2_Rokubacteria_73_35_curated
pyridoxamine 5'-phosphate oxidase-related FMN-binding protein
13_1_40cm_4_scaffold_6015_15
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(11481..11987)
DNA (507bp) protein (169aa)
hypothetical protein id=2197709 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein Tax=GWA2_Rokubacteria_73_35_curated
13_1_40cm_4_scaffold_6015_16
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(11991..13406)
DNA (1416bp) protein (472aa)
EmrB/QacA family drug resistance transporter id=2197710 bin=GWA2_Methylomirabilis_73_35 species=uncultured candidate division OP1 bacterium genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
drug resistance transporter, EmrB/QacA subfamily Tax=GWA2_Rokubacteria_73_35_curated
drug resistance transporter, EmrB/QacA subfamily
13_1_40cm_4_scaffold_6015_17
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(13414..13740)
DNA (327bp) protein (109aa)
Putative uncharacterized protein id=2197711 bin=GWA2_Methylomirabilis_73_35 species=Nitrospina gracilis genus=Nitrospina taxon_order=Nitrospinales taxon_class=Nitrospinia phylum=Nitrospinae tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
Putative uncharacterized protein Tax=GWA2_Rokubacteria_73_35_curated
13_1_40cm_4_scaffold_6015_18
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(13737..14588)
DNA (852bp) protein (284aa)
DNA-3-methyladenine glycosylase II (EC:3.2.2.21); K01247 DNA-3-methyladenine glycosylase II [EC:3.2.2.21] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
DNA-3-methyladenine glycosylase II (EC:3.2.2.21)
DNA-3-methyladenine glycosylase II id=2197712 bin=GWA2_Methylomirabilis_73_35 species=Thermobaculum terrenum genus=Thermobaculum taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_40cm_4_scaffold_6015_19
Herbaspirillum frisingense, Herbaspirillum, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14702..15439
DNA (738bp) protein (246aa)
Metal-dependent hydrolase n=1 Tax=Herbaspirillum frisingense GSF30 RepID=R0G5U9_9BURK
Metal-dependent hydrolase {ECO:0000313|EMBL:EOA05089.1}; TaxID=864073 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Oxalobacteraceae; Herbaspirillum.;" source="Herbaspirillum
beta-lactamase
13_1_40cm_4_scaffold_6015_20
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(15453..17282)
DNA (1830bp) protein (610aa)
amino acid permease-associated protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Amino acid permease-associated region id=2197762 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=Roseiflexus taxon_order=Chloroflexales taxon_class=Chloroflexi phylum=Chloroflexi tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
amino acid permease-associated protein
13_1_40cm_4_scaffold_6015_21
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(17310..19727)
DNA (2418bp) protein (806aa)
replicative DNA helicase; K02314 replicative DNA helicase [EC:3.6.4.12] Tax=GWA2_Rokubacteria_73_35_curated
dnaB; replicative DNA helicase (EC:3.6.4.12)
Replicative DNA helicase id=2197763 bin=GWA2_Methylomirabilis_73_35 species=Allochromatium vinosum genus=Allochromatium taxon_order=Chromatiales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_40cm_4_scaffold_6015_22
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists


comp(19742..20185)
DNA (444bp) protein (148aa)
50S ribosomal protein L9 id=2197764 bin=GWA2_Methylomirabilis_73_35 species=Desulfosporosinus sp. OT genus=Desulfosporosinus taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
50S ribosomal protein L9 Tax=GWA2_Rokubacteria_73_35_curated
50S ribosomal protein L9
13_1_40cm_4_scaffold_6015_23
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(20491..20907)
DNA (417bp) protein (139aa)
Single-stranded DNA-binding protein id=2197765 bin=GWA2_Methylomirabilis_73_35 species=Methylacidiphilum infernorum genus=Methylacidiphilum taxon_order=Methylacidiphilales taxon_class=unknown phylum=Verrucomicrobia tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
ssb; Single-stranded DNA-binding protein; K03111 single-strand DNA-binding protein Tax=GWA2_Rokubacteria_73_35_curated
ssb; Single-stranded DNA-binding protein
13_1_40cm_4_scaffold_6015_24
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists


comp(20907..21224)
DNA (318bp) protein (106aa)
rpsF; 30S ribosomal protein S6; K02990 small subunit ribosomal protein S6 Tax=GWA2_Rokubacteria_73_35_curated
30S ribosomal protein S6 id=2197766 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Solibacter usitatus genus=Candidatus Solibacter taxon_order=Solibacterales taxon_class=Solibacteres phylum=Acidobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
rpsF; 30S ribosomal protein S6
13_1_40cm_4_scaffold_6015_25
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(21411..21953)
DNA (543bp) protein (181aa)
60 kDa chaperonin id=2197767 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
groL; 60 kDa chaperonin (Protein Cpn60) (groEL protein) Tax=GWA2_Rokubacteria_73_35_curated
groL; chaperonin GroEL , truncated
Displaying 25 items

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