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13_1_40cm_4_scaffold_59

Search features with annotation key words

Displaying 25 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_40cm_4_scaffold_59_1
Streptomyces violaceusniger, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(3..413)
DNA (411bp) protein (137aa)
Two component transcriptional regulator, LuxR family n=1 Tax=Streptomyces violaceusniger Tu 4113 RepID=G2P1R3_STRVO
LuxR family two component transcriptional regulator
Two component transcriptional regulator, LuxR family {ECO:0000313|EMBL:AEM88241.1}; TaxID=653045 species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Strepto
13_1_40cm_4_scaffold_59_2
Citrobacter youngae, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

491..979
DNA (489bp) protein (163aa)
diguanylate cyclase n=1 Tax=Variovorax paradoxus RepID=UPI000377DDA0
diguanylate cyclase
Uncharacterized protein {ECO:0000313|EMBL:EFE09233.1}; TaxID=500640 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter; Citrobacter freundii com
13_1_40cm_4_scaffold_59_3
Rhodococcus opacus, Rhodococcus, Corynebacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

976..2094
DNA (1119bp) protein (373aa)
N-methyltryptophan oxidase n=1 Tax=Rhodococcus opacus M213 RepID=K8XPB2_RHOOP
N-methyltryptophan oxidase {ECO:0000313|EMBL:EKT83299.1}; TaxID=1129896 species="Bacteria; Actinobacteria; Corynebacteriales; Nocardiaceae; Rhodococcus.;" source="Rhodococcus opacus M213.;"
Monomeric sarcosine oxidase
13_1_40cm_4_scaffold_59_4
unknown

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2104..2757
DNA (654bp) protein (218aa)

This feature has no annotations

13_1_40cm_4_scaffold_59_5
Rubrobacter xylanophilus, Rubrobacter, Rubrobacterales, Rubrobacteria, Actinobacteria, Bacteria

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2790..3950
DNA (1161bp) protein (387aa)
Major facilitator superfamily MFS_1 n=1 Tax=Rubrobacter xylanophilus (strain DSM 9941 / NBRC 16129) RepID=Q1ARN9_RUBXD
major facilitator transporter
Major facilitator superfamily MFS_1 {ECO:0000313|EMBL:ABG05939.1}; Flags: Precursor;; TaxID=266117 species="Bacteria; Actinobacteria; Rubrobacteria; Rubrobacterales; Rubrobacterineae; Rubrobacteraceae
13_1_40cm_4_scaffold_59_6
Candidatus Desulforudis audaxviator, Candidatus Desulforudis, Clostridiales, Clostridia, Firmicutes, Bacteria

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4138..5826
DNA (1689bp) protein (563aa)
Putative PAS/PAC sensor protein n=1 Tax=Desulforudis audaxviator (strain MP104C) RepID=B1I5C9_DESAP
putative PAS/PAC sensor protein
Putative PAS/PAC sensor protein {ECO:0000313|EMBL:ACA60226.1}; TaxID=477974 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptococcaceae; Candidatus Desulforudis.;" source="Desulforudis au
13_1_40cm_4_scaffold_59_7
unknown

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5973..6233
DNA (261bp) protein (87aa)

This feature has no annotations

13_1_40cm_4_scaffold_59_8
RLO_RIF_CHLX_71_12, Chloroflexi, Bacteria

Not on your lists

6230..8074
DNA (1845bp) protein (615aa)
protein kinase; K08884 serine/threonine protein kinase, bacterial [EC:2.7.11.1] Tax=RIFCSPLOWO2_12_FULL_RIF_CHLX_71_12_curated
Two-component response regulator n=1 Tax=Candidatus Methylomirabilis oxyfera RepID=D5MJX2_9BACT
hypothetical protein
13_1_40cm_4_scaffold_59_9
GWB2_Nitrospirae_47_37_curated, Nitrospirae, Bacteria

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8085..10697
DNA (2613bp) protein (871aa)
Putative uncharacterized protein id=2142312 bin=GWB2_Nitrospirae_rel_47_37 species=Candidatus Kuenenia stuttgartiensis genus=Candidatus Kuenenia taxon_order=Candidatus Brocadiales taxon_class=Planctomycetia phylum=Planctomycetes tax=GWB2_Nitrospirae_rel_47_37 organism_group=Nitrospirae organism_desc=Good + (but may not be Nitrospirae phylum)
sensory transduction histidine kinase Tax=GWB2_Nitrospirae_47_37_curated
Signal transduction histidine kinase
13_1_40cm_4_scaffold_59_10
CSP1_5_NC10, NC10, Bacteria

Not on your lists

10694..11119
DNA (426bp) protein (142aa)
response regulator receiver protein id=14430354 bin=bin3_NC10 species=Azoarcus toluclasticus genus=Azoarcus taxon_order=Rhodocyclales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=bin3_NC10 organism_group=NC10
response regulator receiver protein Tax=CSP1_5_NC10
two component system response regulator, modulated diguanylate cyclase
13_1_40cm_4_scaffold_59_11
RLO_RIF05_58_11, RIF5, Bacteria

Not on your lists

11116..11499
DNA (384bp) protein (128aa)
response regulator receiver sensor signal transduction histidine kinase (EC:2.7.13.3)
Response regulator receiver sensor signal transduction histidine kinase n=1 Tax=Chloroflexus aggregans (strain MD-66 / DSM 9485) RepID=B8G4L9_CHLAD
putative two-component sensor protein/histidine protein kinase Tax=RIFCSPLOWO2_12_FULL_RIF05_58_11_curated
13_1_40cm_4_scaffold_59_12
unknown

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11649..11744
DNA (96bp) protein (32aa)

This feature has no annotations

13_1_40cm_4_scaffold_59_13
Chloroherpeton thalassium, Chloroherpeton, Chlorobiales, Chlorobia, Chlorobi, Bacteria

Not on your lists

11800..13170
DNA (1371bp) protein (457aa)
Diguanylate cyclase and serine/threonine protein kinase with TPR repeats n=1 Tax=Chloroherpeton thalassium (strain ATCC 35110 / GB-78) RepID=B3QT84_CHLT3
diguanylate cyclase/serine/threonine protein kinase
Diguanylate cyclase and serine/threonine protein kinase with TPR repeats {ECO:0000313|EMBL:ACF14183.1}; TaxID=517418 species="Bacteria; Chlorobi; Chlorobia; Chlorobiales; Chlorobiaceae; Chloroherpeton
13_1_40cm_4_scaffold_59_14
Thermaerobacter marianensis, Thermaerobacter, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(13174..14175)
DNA (1002bp) protein (334aa)
cytochrome bd quinol oxidase subunit 2 (EC:1.10.3.-)
Cytochrome bd quinol oxidase subunit 2 apoprotein {ECO:0000313|EMBL:ADU50852.1}; EC=1.10.3.- {ECO:0000313|EMBL:ADU50852.1};; Flags: Precursor;; TaxID=644966 species="Bacteria; Firmicutes; Clostridia;
Cytochrome bd quinol oxidase subunit 2 apoprotein n=1 Tax=Thermaerobacter marianensis (strain ATCC 700841 / DSM 12885 / JCM 10246 / 7p75a) RepID=E6SI74_THEM7
13_1_40cm_4_scaffold_59_15
Ktedonobacter racemifer, Ktedonobacter, Ktedonobacterales, Ktedonobacteria, Chloroflexi, Bacteria

Not on your lists

comp(14172..15455)
DNA (1284bp) protein (428aa)
Cytochrome bd ubiquinol oxidase subunit I n=1 Tax=Ktedonobacter racemifer DSM 44963 RepID=D6TJQ9_9CHLR
Cytochrome bd ubiquinol oxidase subunit I {ECO:0000313|EMBL:EFH89666.1}; Flags: Precursor;; TaxID=485913 species="Bacteria; Chloroflexi; Ktedonobacteria; Ktedonobacterales; Ktedonobacteraceae; Ktedono
cytochrome bd ubiquinol oxidase subunit I
13_1_40cm_4_scaffold_59_16
Brevibacterium mcbrellneri, Brevibacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

15761..16276
DNA (516bp) protein (172aa)
Transcriptional regulatory protein, C-terminal domain protein {ECO:0000313|EMBL:EFG48478.1}; TaxID=585530 species="Bacteria; Actinobacteria; Micrococcales; Brevibacteriaceae; Brevibacterium.;" source=
winged helix family two component transcriptional regulator
13_1_40cm_4_scaffold_59_17
unknown

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16276..16674
DNA (399bp) protein (133aa)

This feature has no annotations

13_1_40cm_4_scaffold_59_18
RLO_PLX_64_10, Bacteria

Not on your lists

comp(16694..18529)
DNA (1836bp) protein (612aa)
MCP methyltransferase, CheR-type with PAS/PAC sensor (EC:2.1.1.80) Tax=RIFCSPLOWO2_12_FULL_PLX_64_10_curated
MCP methyltransferase, CheR-type with PAS/PAC sensor (EC:2.1.1.80)
MCP methyltransferase, CheR-type with PAS/PAC sensor n=1 Tax=Nostoc punctiforme (strain ATCC 29133 / PCC 73102) RepID=B2J4S6_NOSP7
13_1_40cm_4_scaffold_59_19
Aphanizomenon flos-aquae, Aphanizomenon, Nostocales, Cyanobacteria, Bacteria

Not on your lists

comp(18526..19089)
DNA (564bp) protein (188aa)
Chemotaxis response regulator containing a CheY-like receiver domain and a methylesterase domain n=1 Tax=Cylindrospermum stagnale PCC 7417 RepID=K9WUP3_9NOST
Chemotaxis protein {ECO:0000313|EMBL:KHG40305.1}; TaxID=1532906 species="Bacteria; Cyanobacteria; Nostocales; Nostocaceae; Aphanizomenon.;" source="Aphanizomenon flos-aquae 2012/KM1/D3.;"
chemotaxis response regulator containing a CheY-like receiver domain and a methylesterase domain
13_1_40cm_4_scaffold_59_20
RBG_16_Actinobacteria_68_12_curated, Actinobacteria, Bacteria

Not on your lists

19098..20402
DNA (1305bp) protein (435aa)
peptidase M29 aminopeptidase II; K01269 aminopeptidase [EC:3.4.11.-] Tax=RBG_16_Actinobacteria_68_12_curated
hypothetical protein n=1 Tax=Amycolatopsis alba RepID=UPI000376AD20
peptidase M29 aminopeptidase II
13_1_40cm_4_scaffold_59_21
CG_Delta_05, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20422..21204
DNA (783bp) protein (261aa)
short-chain dehydrogenase/reductase SDR Tax=CG_Delta_05
Short-chain dehydrogenase/reductase SDR id=3880340 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=unknown taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
short-chain dehydrogenase/reductase SDR
13_1_40cm_4_scaffold_59_22
Gordonia amarae, Gordonia, Corynebacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(21189..22187)
DNA (999bp) protein (333aa)
Putative oxidoreductase n=1 Tax=Gordonia amarae NBRC 15530 RepID=G7GNR2_9ACTO
Putative oxidoreductase {ECO:0000313|EMBL:GAB05237.1}; TaxID=1075090 species="Bacteria; Actinobacteria; Corynebacteriales; Gordoniaceae; Gordonia.;" source="Gordonia amarae NBRC 15530.;"
5,10-methylene tetrahydromethanopterin reductase
13_1_40cm_4_scaffold_59_23
Castellaniella defragrans, Castellaniella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22184..22969)
DNA (786bp) protein (262aa)
Beta-ketoadipate enol-lactone hydrolase (EC:3.1.1.24)
Beta-ketoadipate enol-lactone hydrolase {ECO:0000313|EMBL:CDM23595.1}; EC=3.1.1.24 {ECO:0000313|EMBL:CDM23595.1};; TaxID=1437824 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales;
alpha/beta hydrolase n=1 Tax=Saccharopolyspora spinosa RepID=UPI000237B2EF
13_1_40cm_4_scaffold_59_24
Kibdelosporangium sp. MJ126-NF4, Kibdelosporangium, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(22953..24365)
DNA (1413bp) protein (471aa)
2,3-dihydroxybenzoate-AMP ligase {ECO:0000313|EMBL:CEL20864.1}; EC=2.7.7.58 {ECO:0000313|EMBL:CEL20864.1};; TaxID=703222 species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Kibde
pentalenene synthase n=1 Tax=Streptomyces sp. SS RepID=UPI0002F5BA63
AMP-dependent synthetase
13_1_40cm_4_scaffold_59_25
R_Rokubacteria_68_19, Rokubacteria, Bacteria

Not on your lists

comp(24362..26032)
DNA (1671bp) protein (557aa)
carbon monoxide dehydrogenase large chain (COdehydrogenase subunit L) (CO-DH L) (EC:1.2.99.2) Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_68_19_curated
Carbon monoxide dehydrogenase large chain (COdehydrogenase subunit L) (CO-DH L) id=3847107 bin=GWC2_Methylomirabilis_70_16 species=Thermomicrobium roseum genus=Thermomicrobium taxon_order=Thermomicrobiales taxon_class=Thermomicrobia phylum=Chloroflexi tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
Carbon monoxide dehydrogenase large chain
Displaying 25 items

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