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13_1_40cm_4_scaffold_6264

Search features with annotation key words

Displaying 25 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_40cm_4_scaffold_6264_1
Desulfotomaculum carboxydivorans, Desulfotomaculum, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(2..232)
-----------------
DNA (231bp)
protein (77aa)
4-diphosphocytidyl-2-C-methyl-D-erythritol kinase (EC:2.7.1.148)
4-diphosphocytidyl-2-C-methyl-D-erythritol kinase {ECO:0000256|HAMAP-Rule:MF_00061, ECO:0000256|SAAS:SAAS00090350}; Short=CMK {ECO:0000256|HAMAP-Rule:MF_00061};; EC=2.7.1.148 {ECO:0000256|HAMAP-Rule:M
4-diphosphocytidyl-2-C-methyl-D-erythritol kinase n=1 Tax=Desulfotomaculum nigrificans DSM 574 RepID=F0DIQ0_9FIRM
13_1_40cm_4_scaffold_6264_2
S_Thermoanaerobacterales_50_218, Thermoanaerobacterales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(229..1827)
-----------------
DNA (1599bp)
protein (533aa)
integral membrane protein MviN n=1 Tax=Desulfitobacterium sp. PCE1 RepID=UPI000361F2AC
Virulence factor MviN Tax=S_Thermoanaerobacterales_50_218
integral membrane protein MviN
13_1_40cm_4_scaffold_6264_3
RBG_13_Chloroflexi_66_10_curated, Chloroflexi, Bacteria

Not on your lists


1987..2319
-----------------
DNA (333bp)
protein (111aa)
30S ribosomal protein S20 n=1 Tax=Ktedonobacter racemifer DSM 44963 RepID=D6TME6_9CHLR
rpsT; 30S ribosomal protein S20; K02968 small subunit ribosomal protein S20 Tax=RBG_13_Chloroflexi_66_10_curated
rpsT; 30S ribosomal protein S20
13_1_40cm_4_scaffold_6264_4
Brevibacillus brevis, Brevibacillus, Bacillales, Bacilli, Firmicutes, Bacteria

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comp(2373..3335)
-----------------
DNA (963bp)
protein (321aa)
DNA polymerase III subunit delta n=1 Tax=Brevibacillus brevis RepID=UPI0003451D13
yqeN; hypothetical protein
Putative uncharacterized protein yqeN {ECO:0000313|EMBL:BAH42979.1}; TaxID=358681 species="Bacteria; Firmicutes; Bacilli; Bacillales; Paenibacillaceae; Brevibacillus.;" source="Brevibacillus brevis (s
13_1_40cm_4_scaffold_6264_5
RBG_13_Deltaproteobacteria_65_10_curated, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(3340..3690)
-----------------
DNA (351bp)
protein (117aa)
putative pterin-4-alpha-carbinolamine dehydratase (EC:4.2.1.96)
pterin-4-alpha-carbinolamine dehydratase Tax=RBG_13_Deltaproteobacteria_65_10_curated
Threonine synthase id=3423618 bin=GWA1_ZB2_49_26 species=GWA2_OP11 genus=GWA2_OP11 taxon_order=GWA2_OP11 taxon_class=GWA2_OP11 phylum=OP11 tax=GWA1_ZB2_49_26 organism_group=ZB2 organism_desc=Good
13_1_40cm_4_scaffold_6264_6
Hyalangium minutum, Hyalangium, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

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3784..4701
-----------------
DNA (918bp)
protein (306aa)
Alcohol dehydrogenase GroES-like protein n=1 Tax=Rubrobacter xylanophilus (strain DSM 9941 / NBRC 16129) RepID=Q1AZZ1_RUBXD
Alcohol dehydrogenase {ECO:0000313|EMBL:KFE67072.1}; TaxID=394096 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Cystobacterineae; Cystobacteraceae; Hyalangium.;" source="Hyalan
alcohol dehydrogenase GroES-like protein
13_1_40cm_4_scaffold_6264_7
Natrialba asiatica, Natrialba, Natrialbales, Halobacteria, Euryarchaeota, Archaea

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comp(4713..5687)
-----------------
DNA (975bp)
protein (325aa)
Uncharacterized protein n=1 Tax=Natrialba asiatica (strain ATCC 700177 / DSM 12278 / JCM 9576 / FERM P-10747 / NBRC 102637 / 172P1) RepID=M0AIF3_NATA1
Uncharacterized protein {ECO:0000313|EMBL:ELY98131.1}; TaxID=29540 species="Archaea; Euryarchaeota; Halobacteria; Natrialbales; Natrialbaceae; Natrialba.;" source="Natrialba asiatica (strain ATCC 7001
hypothetical protein
13_1_40cm_4_scaffold_6264_8
R_NC10_66_22, NC10, Bacteria

Not on your lists

comp(5725..6735)
-----------------
DNA (1011bp)
protein (337aa)
Cyclic pyranopterin monophosphate synthase n=1 Tax=Candidatus Microthrix parvicella RN1 RepID=R4Z5H1_9ACTN
molybdenum cofactor biosynthesis protein A; K03639 molybdenum cofactor biosynthesis protein Tax=RIFCSPLOWO2_02_FULL_NC10_66_22_curated
moaA; molybdenum cofactor biosynthesis protein MoaA
13_1_40cm_4_scaffold_6264_9
GWC2_RIF_CHLX_73_18_curated, RIF-CHLX, Bacteria

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comp(6814..7191)
-----------------
DNA (378bp)
protein (126aa)
UPI00029884CA related cluster id=3491492 bin=GWC2_Chloroflexi_73_18 species=Propionibacterium acidipropionici genus=Propionibacterium taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=GWC2_Chloroflexi_73_18 organism_group=Chloroflexi organism_desc=Good +
UPI00029884CA related cluster Tax=GWC2_RIF_CHLX_73_18_curated
hypothetical protein
13_1_40cm_4_scaffold_6264_10
unknown

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comp(7260..9140)
-----------------
DNA (1881bp)
protein (627aa)

This feature has no annotations

13_1_40cm_4_scaffold_6264_11
RLO_RIF_CHLX_71_12, Chloroflexi, Bacteria

Not on your lists

comp(9309..10088)
-----------------
DNA (780bp)
protein (260aa)
Uncharacterized protein n=1 Tax=Micromonospora lupini str. Lupac 08 RepID=I0L564_9ACTO
hypothetical protein
Tax=RIFCSPLOWO2_12_FULL_RIF_CHLX_71_12_curated
13_1_40cm_4_scaffold_6264_12
unknown

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comp(10081..10182)
-----------------
DNA (102bp)
protein (34aa)

This feature has no annotations

13_1_40cm_4_scaffold_6264_13
RBG_16_RIF_CHLX_72_14_curated, RIF-CHLX, Bacteria

Not on your lists

comp(10218..10634)
-----------------
DNA (417bp)
protein (139aa)
Putative RNA polymerase ECF-subfamily sigma factor n=1 Tax=Actinoplanes friuliensis DSM 7358 RepID=U5W1V9_9ACTO
ECF subfamily RNA polymerase sigma-24 subunit; K03088 RNA polymerase sigma-70 factor, ECF subfamily Tax=RBG_16_RIF_CHLX_72_14_curated
sigma-70 family RNA polymerase
13_1_40cm_4_scaffold_6264_14

Not on your lists

comp(10729..10938)
-----------------
DNA (210bp)
protein (70aa)
Uncharacterized protein n=1 Tax=Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849) RepID=Q2Y6T0_NITMU
Uncultured bacterium genome assembly Metasoil_fosmids_resub {ECO:0000313|EMBL:CEF49087.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
hypothetical protein
13_1_40cm_4_scaffold_6264_15
unknown

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comp(11068..12108)
-----------------
DNA (1041bp)
protein (347aa)

This feature has no annotations

13_1_40cm_4_scaffold_6264_16
CSP1_3_Armatimonadetes, Armatimonadetes, Bacteria

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comp(12244..13020)
-----------------
DNA (777bp)
protein (259aa)
id=14633163 bin=bin9_gal15 tax=bin9_gal15 organism_group=GAL15
xylose isomerase domain-containing protein
Tax=CSP1_3_Armatimonadetes
13_1_40cm_4_scaffold_6264_17
RBG_19FT_COMBO_Armatimonadetes_69_19_curated, Armatimonadetes, Bacteria

Not on your lists

comp(13053..13901)
-----------------
DNA (849bp)
protein (283aa)
binding-protein-dependent transport system inner membrane protein; K02026 multiple sugar transport system permease protein id=24453332 bin=RBG_19FT_COMBO_GAL15_69_19 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=RBG_19FT_COMBO_GAL15_69_19 organism_group=GAL15 organism_desc=Curation Candidate
binding-protein-dependent transport system inner membrane protein; K02026 multiple sugar transport system permease protein Tax=RBG_19FT_COMBO_Armatimonadetes_69_19_curated
probable ABC transporter permease protein yurM
13_1_40cm_4_scaffold_6264_18
Dictyoglomus turgidum, Dictyoglomus, Dictyoglomales, Dictyoglomia, Dictyoglomi, Bacteria

Not on your lists

comp(13901..14833)
-----------------
DNA (933bp)
protein (311aa)
Binding-protein-dependent transport systems inner membrane component n=1 Tax=Dictyoglomus turgidum (strain Z-1310 / DSM 6724) RepID=B8E3E0_DICTD
binding-protein-dependent transport system inner membrane protein
Binding-protein-dependent transport systems inner membrane component {ECO:0000313|EMBL:ACK43014.1}; TaxID=515635 species="Bacteria; Dictyoglomi; Dictyoglomales; Dictyoglomaceae; Dictyoglomus.;" source
13_1_40cm_4_scaffold_6264_19
Halobacillus sp. BBL2006, Halobacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(14858..16186)
-----------------
DNA (1329bp)
protein (443aa)
hypothetical protein n=1 Tax=Salsuginibacillus kocurii RepID=UPI00036968E9
Uncharacterized protein {ECO:0000313|EMBL:KHE72589.1}; TaxID=1543706 species="Bacteria; Firmicutes; Bacilli; Bacillales; Bacillaceae; Halobacillus.;" source="Halobacillus sp. BBL2006.;"
extracellular solute-binding protein
13_1_40cm_4_scaffold_6264_20
RBG_13_Planctomycetes_62_9_curated, Phycisphaerae, Planctomycetes, Bacteria

Not on your lists

comp(16287..17357)
-----------------
DNA (1071bp)
protein (357aa)
tal; transaldolase; K00616 transaldolase [EC:2.2.1.2] Tax=RBG_13_Planctomycetes_62_9_curated
tal; transaldolase; K00616 transaldolase [EC:2.2.1.2] id=24559353 bin=RBG_19FT_COMBO_GAL15_69_19 species=Caldilinea aerophila genus=Caldilinea taxon_order=Caldilineales taxon_class=Caldilineae phylum=Chloroflexi tax=RBG_19FT_COMBO_GAL15_69_19 organism_group=GAL15 organism_desc=Curation Candidate
talB; transaldolase (EC:2.2.1.2)
13_1_40cm_4_scaffold_6264_21
Rubrobacter xylanophilus, Rubrobacter, Rubrobacterales, Rubrobacteria, Actinobacteria, Bacteria

Not on your lists

17413..19284
-----------------
DNA (1872bp)
protein (624aa)
Thiamine pyrophosphate enzyme, central region n=1 Tax=Rubrobacter xylanophilus (strain DSM 9941 / NBRC 16129) RepID=Q1AVA0_RUBXD
thiamine pyrophosphate enzyme, central region
Thiamine pyrophosphate enzyme, central region {ECO:0000313|EMBL:ABG04678.1}; TaxID=266117 species="Bacteria; Actinobacteria; Rubrobacteria; Rubrobacterales; Rubrobacterineae; Rubrobacteraceae; Rubroba
13_1_40cm_4_scaffold_6264_22
Rubrobacter xylanophilus, Rubrobacter, Rubrobacterales, Rubrobacteria, Actinobacteria, Bacteria

Not on your lists

comp(19289..20074)
-----------------
DNA (786bp)
protein (262aa)
Myo-inositol catabolism IolB region n=1 Tax=Rubrobacter xylanophilus (strain DSM 9941 / NBRC 16129) RepID=Q1AVA1_RUBXD
myo-inositol catabolism IolB region
Myo-inositol catabolism IolB region {ECO:0000313|EMBL:ABG04677.1}; TaxID=266117 species="Bacteria; Actinobacteria; Rubrobacteria; Rubrobacterales; Rubrobacterineae; Rubrobacteraceae; Rubrobacter.;" so
13_1_40cm_4_scaffold_6264_23
Acidothermus cellulolyticus, Acidothermus, Acidothermales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(20078..20989)
-----------------
DNA (912bp)
protein (304aa)
2-keto-myo-inositol dehydratase {ECO:0000313|EMBL:ABK53588.1}; EC=4.2.1.44 {ECO:0000313|EMBL:ABK53588.1};; TaxID=351607 species="Bacteria; Actinobacteria; Acidothermales; Acidothermaceae; Acidothermus
2-keto-myo-inositol dehydratase n=1 Tax=Acidothermus cellulolyticus (strain ATCC 43068 / 11B) RepID=A0LVX8_ACIC1
xylose isomerase domain-containing protein
13_1_40cm_4_scaffold_6264_24
R_NC10_66_22, NC10, Bacteria

Not on your lists

21137..21394
-----------------
DNA (258bp)
protein (86aa)
Oxidoreductase domain protein n=1 Tax=Mesorhizobium sp. STM 4661 RepID=M5F415_9RHIZ
oxidoreductase domain-containing protein Tax=RIFCSPLOWO2_02_FULL_NC10_66_22_curated
oxidoreductase domain-containing protein
13_1_40cm_4_scaffold_6264_25
RBG_16_NC10_65_8_curated, NC10, Bacteria

Not on your lists

21394..22110
-----------------
DNA (717bp)
protein (239aa)
SpcB n=1 Tax=Streptomyces spectabilis RepID=Q9S3X6_STRST
oxidoreductase domain-containing protein Tax=RBG_16_NC10_65_8_curated
Displaying 25 items

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