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13_1_40cm_4_scaffold_6278

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Displaying 28 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_40cm_4_scaffold_6278_1
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

3..344
DNA (342bp) protein (114aa)
Uncharacterized protein n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A4A7_GEMAT
hypothetical protein; K07164 Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
protein of unknown function DUF164
13_1_40cm_4_scaffold_6278_2
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

341..1606
DNA (1266bp) protein (422aa)
recJ; single-stranded-DNA-specific exonuclease (EC:3.1.-.-); K07462 single-stranded-DNA-specific exonuclease [EC:3.1.-.-] Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
recJ; single-stranded-DNA-specific exonuclease (EC:3.1.-.-)
Single-stranded-DNA-specific exonuclease n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A4A6_GEMAT
13_1_40cm_4_scaffold_6278_3
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

1575..2024
DNA (450bp) protein (150aa)
recJ; single-stranded-DNA-specific exonuclease (EC:3.1.-.-); K07462 single-stranded-DNA-specific exonuclease [EC:3.1.-.-] Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
recJ; single-stranded-DNA-specific exonuclease (EC:3.1.-.-)
Single-stranded-DNA-specific exonuclease n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A4A6_GEMAT
13_1_40cm_4_scaffold_6278_4
GWC2_Gemmatimonadetes_71_10_curated, Gemmatimonadetes, Bacteria

Not on your lists

2535..3014
DNA (480bp) protein (160aa)
coaD; phosphopantetheine adenylyltransferase (EC:2.7.7.3); K00954 pantetheine-phosphate adenylyltransferase [EC:2.7.7.3] Tax=GWC2_Gemmatimonadetes_71_10_curated
coaD; phosphopantetheine adenylyltransferase (EC:2.7.7.3)
Phosphopantetheine adenylyltransferase n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A4A4_GEMAT
13_1_40cm_4_scaffold_6278_5
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

3011..3925
DNA (915bp) protein (305aa)
pta; phosphate acetyltransferase (EC:2.3.1.8); K00625 phosphate acetyltransferase [EC:2.3.1.8] Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
Phosphate acetyltransferase n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A4A3_GEMAT
phosphate acetyl/butaryl transferase
13_1_40cm_4_scaffold_6278_6
R_Gemmatimonadetes_71_11, Gemmatimonadetes, Bacteria

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3930..4265
DNA (336bp) protein (112aa)
Anti-sigma factor antagonist n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A4A2_GEMAT
putative anti sigma factor antagonist Tax=RIFCSPLOWO2_02_FULL_Gemmatimonadetes_71_11_curated
anti-anti-sigma factor
13_1_40cm_4_scaffold_6278_7
R_Gemmatimonadetes_71_11, Gemmatimonadetes, Bacteria

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4445..4648
DNA (204bp) protein (68aa)
response regulator receiver n=1 Tax=Schlesneria paludicola RepID=UPI00029AE1E1
response regulator receiver protein Tax=RIFCSPLOWO2_02_FULL_Gemmatimonadetes_71_11_curated
response regulator receiver protein
13_1_40cm_4_scaffold_6278_8
R_Gemmatimonadetes_71_11, Gemmatimonadetes, Bacteria

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4645..6252
DNA (1608bp) protein (536aa)
Putative phosphatase n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A4A0_GEMAT
putative phosphatase Tax=RIFCSPLOWO2_02_FULL_Gemmatimonadetes_71_11_curated
protein phosphatase 2C domain protein
13_1_40cm_4_scaffold_6278_9
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists


6605..6985
DNA (381bp) protein (127aa)
ksgA; dimethyladenosine transferase (EC:2.1.1.-); K02528 16S rRNA (adenine1518-N6/adenine1519-N6)-dimethyltransferase [EC:2.1.1.182] Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
ksgA; S-adenosylmethionine-6-N',N'-adenosyl (rRNA) dimethyltransferase (EC:2.1.1.-)
Ribosomal RNA small subunit methyltransferase A n=1 Tax=Herbaspirillum seropedicae (strain SmR1) RepID=D8IZA7_HERSS
13_1_40cm_4_scaffold_6278_10
Candidatus Methylomirabilis oxyfera, Candidatus Methylomirabilis, Bacteria

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7001..7327
DNA (327bp) protein (109aa)
Arsenical resistance operon repressor n=1 Tax=Candidatus Methylomirabilis oxyfera RepID=D5MEK8_9BACT
arsR; Arsenical resistance operon repressor
Arsenical resistance operon repressor {ECO:0000313|EMBL:CBE68185.1}; TaxID=671143 species="Bacteria; candidate division NC10; Candidatus Methylomirabilis.;" source="Candidatus Methylomirabilis oxyfera
13_1_40cm_4_scaffold_6278_11
RIFCSPLOWO2_12_FULL_Acidobacteria_59_11_curated, Acidobacteria, Bacteria

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7356..8141
DNA (786bp) protein (262aa)
arsM; arsenite S-adenosylmethyltransferase Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_59_11_curated
Methyltransferase type 11 id=4554876 bin=GWC2_Methylomirabilis_70_24 species=Candidatus Solibacter usitatus genus=Candidatus Solibacter taxon_order=Solibacterales taxon_class=Solibacteres phylum=Acidobacteria tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
arsM; arsenite S-adenosylmethyltransferase
13_1_40cm_4_scaffold_6278_12
R_Gemmatimonadetes_71_11, Gemmatimonadetes, Bacteria

Not on your lists

8189..8584
DNA (396bp) protein (132aa)
arsenate reductase (EC:1.20.4.1 3.1.3.48) Tax=RIFCSPLOWO2_02_FULL_Gemmatimonadetes_71_11_curated
Phosphotyrosine protein phosphatase I superfamily
Protein-tyrosine phosphatase, low molecular weight id=1896501 bin=GWE2_Gallionellales_58_10 species=Sideroxydans lithotrophicus genus=Sideroxydans taxon_order=Gallionellales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE2_Gallionellales_58_10 organism_group=Betaproteobacteria organism_desc=Good, but small
13_1_40cm_4_scaffold_6278_13
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

Not on your lists

8591..9154
DNA (564bp) protein (188aa)
Redox-sensing transcriptional repressor Rex n=1 Tax=candidate division ZIXI bacterium RBG-1 RepID=T0MHW9_9BACT
redox-sensing transcriptional repressor Rex; K01926 redox-sensing transcriptional repressor Tax=RBG_16_Gemmatimonadetes_66_8_curated
AT-rich DNA-binding protein
13_1_40cm_4_scaffold_6278_14
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

9273..10487
DNA (1215bp) protein (405aa)
arginine deiminase; K01478 arginine deiminase [EC:3.5.3.6] Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
arginine deiminase (EC:3.5.3.6)
hypothetical protein n=1 Tax=Spirochaeta alkalica RepID=UPI00037C55B5
13_1_40cm_4_scaffold_6278_15
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

Not on your lists

10574..11266
DNA (693bp) protein (231aa)
dnaQ; DNA polymerase III epsilon subunit (EC:2.7.7.7); K02342 DNA polymerase III subunit epsilon [EC:2.7.7.7] Tax=RBG_16_Gemmatimonadetes_66_8_curated
dnaQ; DNA polymerase III epsilon subunit (EC:2.7.7.7)
DNA polymerase III epsilon subunit n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A497_GEMAT
13_1_40cm_4_scaffold_6278_16
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

11247..12143
DNA (897bp) protein (299aa)
Uncharacterized protein n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A496_GEMAT
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
beta-lactamase domain protein
13_1_40cm_4_scaffold_6278_17
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

12379..12840
DNA (462bp) protein (154aa)
Translation initiation factor IF-3 n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A495_GEMAT
infC; translation initiation factor IF-3; K02520 translation initiation factor IF-3 Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
infC; translation initiation factor IF-3
13_1_40cm_4_scaffold_6278_18
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

Not on your lists


12928..13119
DNA (192bp) protein (64aa)
50S ribosomal protein L35 n=2 Tax=Clostridiales RepID=E0QH50_9FIRM
50S ribosomal protein L35; K02916 large subunit ribosomal protein L35 Tax=RBG_16_Gemmatimonadetes_66_8_curated
50S ribosomal protein L35
13_1_40cm_4_scaffold_6278_19
R_Gemmatimonadetes_71_11, Gemmatimonadetes, Bacteria

Not on your lists


13129..13482
DNA (354bp) protein (118aa)
50S ribosomal protein L20 n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=RL20_GEMAT
rplT; 50S ribosomal protein L20; K02887 large subunit ribosomal protein L20 Tax=RIFCSPLOWO2_02_FULL_Gemmatimonadetes_71_11_curated
rplT; 50S ribosomal protein L20
13_1_40cm_4_scaffold_6278_20
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists


13485..14537
DNA (1053bp) protein (351aa)
pheS; phenylalanyl-tRNA synthetase subunit alpha; K01889 phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20] Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
Phenylalanine--tRNA ligase alpha subunit n=1 Tax=Desulfomonile tiedjei (strain ATCC 49306 / DSM 6799 / DCB-1) RepID=I4CA98_DESTA
Phenylalanyl-tRNA synthetase alpha chain
13_1_40cm_4_scaffold_6278_21
Gemmatimonas aurantiaca, Gemmatimonas, Gemmatimonadales, Gemmatimonadetes, Gemmatimonadetes, Bacteria

Not on your lists

15826..16854
DNA (1029bp) protein (343aa)
pheT; phenylalanyl-tRNA synthetase beta chain (EC:6.1.1.20)
Phenylalanine--tRNA ligase beta subunit {ECO:0000256|HAMAP-Rule:MF_00283, ECO:0000256|SAAS:SAAS00103829}; EC=6.1.1.20 {ECO:0000256|HAMAP-Rule:MF_00283, ECO:0000256|SAAS:SAAS00022425};; Phenylalanyl-tR
Phenylalanine--tRNA ligase beta subunit n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A491_GEMAT
13_1_40cm_4_scaffold_6278_22
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

Not on your lists

16826..17410
DNA (585bp) protein (195aa)
Uncharacterized protein n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A489_GEMAT
hypothetical protein; K09888 cell division protein ZapA Tax=RBG_16_Gemmatimonadetes_66_8_curated
protein of unknown function DUF710
13_1_40cm_4_scaffold_6278_23
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

17492..18916
DNA (1425bp) protein (475aa)
Ribonuclease Y n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A488_GEMAT
hypothetical protein; K06950 uncharacterized protein Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
2',3'-cyclic-nucleotide 2'-phosphodiesterase
13_1_40cm_4_scaffold_6278_24
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

18906..19799
DNA (894bp) protein (298aa)
methenyltetrahydrofolate cyclohydrolase/5,10-methylenetetrahydrofolate dehydrogenase (NADP+) (EC:3.5.4.9 1.5.1.5) Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
Methenyltetrahydrofolate cyclohydrolase (EC:3.5.4.9)
bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase n=1 Tax=Spirochaeta bajacaliforniensis RepID=UPI00036A1E70
13_1_40cm_4_scaffold_6278_25
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

19778..20929
DNA (1152bp) protein (384aa)
xseA; exodeoxyribonuclease VII large subunit (EC:3.1.11.6); K03601 exodeoxyribonuclease VII large subunit [EC:3.1.11.6] Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
Exodeoxyribonuclease 7 large subunit n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A486_GEMAT
Exodeoxyribonuclease 7 large subunit
13_1_40cm_4_scaffold_6278_26
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

20913..21104
DNA (192bp) protein (64aa)
xseB; exodeoxyribonuclease VII small subunit (EC:3.1.11.6); K03602 exodeoxyribonuclease VII small subunit [EC:3.1.11.6] Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
exonuclease VII small subunit; K03602 exodeoxyribonuclease VII small subunit [EC:3.1.11.6] id=1250686 bin=RBG1 species=RBG1 genus=RBG1 taxon_order=RBG1 taxon_class=RBG1 phylum=Zixibacteria tax=RBG1 organism_group=Zixibacteria
exodeoxyribonuclease VII, small subunit
13_1_40cm_4_scaffold_6278_27
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

21139..21960
DNA (822bp) protein (274aa)
geranyltranstransferase (EC:2.5.1.10); K13789 geranylgeranyl diphosphate synthase, type II [EC:2.5.1.1 2.5.1.10 2.5.1.29] Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
Geranyltranstransferase n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A484_GEMAT
Polyprenyl synthetase
13_1_40cm_4_scaffold_6278_28
GWC2_Gemmatimonadetes_71_10_curated, Gemmatimonadetes, Bacteria

Not on your lists

21957..23327
DNA (1371bp) protein (457aa)
dxs; 1-deoxy-D-xylulose-5-phosphate synthase (EC:2.2.1.7); K01662 1-deoxy-D-xylulose-5-phosphate synthase [EC:2.2.1.7] Tax=GWC2_Gemmatimonadetes_71_10_curated
1-deoxy-D-xylulose-5-phosphate synthase n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A483_GEMAT
1-deoxy-D-xylulose-5-phosphate synthase
Displaying 28 items

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