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13_1_40cm_4_scaffold_682

Search features with annotation key words

Displaying items 1-30 of 34 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_40cm_4_scaffold_682_1
RBG_16_Archaea_50_20_curated, Archaea

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2..2494
DNA (2493bp) protein (831aa)
putative ATP-dependent helicase; K03724 ATP-dependent helicase Lhr and Lhr-like helicase [EC:3.6.4.-] Tax=RBG_16_Archaea_50_20_curated
ATP dependent helicase, lhr family n=1 Tax=Halogranum salarium B-1 RepID=J3JHW5_9EURY
putative ATP-dependent helicase
13_1_40cm_4_scaffold_682_2

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comp(2512..3399)
DNA (888bp) protein (296aa)
modification methylase n=1 Tax=Calescamantes bacterium SCGC AAA471-M6 RepID=UPI0003B54648
Putative N4-cytosine methylase {ECO:0000313|EMBL:AFU92044.1}; TaxID=1123964 species="Viruses; dsDNA viruses, no RNA stage; Bicaudaviridae; unclassified Bicaudaviridae.;" source="Sulfolobus virus STSV2
DNA methylase
13_1_40cm_4_scaffold_682_3
Methanosphaerula palustris, Methanosphaerula, Methanomicrobiales, Methanomicrobia, Euryarchaeota, Archaea

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3827..5674
DNA (1848bp) protein (616aa)
NHL repeat containing protein n=1 Tax=Methanosphaerula palustris (strain ATCC BAA-1556 / DSM 19958 / E1-9c) RepID=B8GHS3_METPE
NHL repeat containing protein {ECO:0000313|EMBL:ACL16678.1}; Flags: Precursor;; TaxID=521011 species="Archaea; Euryarchaeota; Methanomicrobia; Methanomicrobiales; Methanoregulaceae; Methanosphaerula.;
NHL repeat containing protein
13_1_40cm_4_scaffold_682_4
unknown

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5754..5969
DNA (216bp) protein (72aa)

This feature has no annotations

13_1_40cm_4_scaffold_682_5
Streptomyces rubellomurinus, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

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comp(5913..7355)
DNA (1443bp) protein (481aa)
Peptidase S8 and S53 n=1 Tax=Streptomyces chartreusis RepID=UPI000262D9AE
Uncharacterized protein {ECO:0000313|EMBL:KJS62263.1}; TaxID=359131 species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces rubellomurinus.;"
physarolisin II
13_1_40cm_4_scaffold_682_6
Candidatus Caldiarchaeum subterraneum, Candidatus Caldiarchaeum, Thaumarchaeota, Archaea

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7500..8315
DNA (816bp) protein (272aa)
Metallo-beta-lactamase family protein n=1 Tax=Candidatus Caldiarchaeum subterraneum RepID=E6N315_9ARCH
Metallo-beta-lactamase family protein {ECO:0000313|EMBL:BAJ46721.1}; TaxID=311458 species="Archaea; Thaumarchaeota; unclassified Thaumarchaeota; Candidatus Caldiarchaeum.;" source="Candidatus Caldiarc
beta-lactamase domain protein
13_1_40cm_4_scaffold_682_7
RBG_16_Chloroflexi_68_14_curated, Chloroflexi, Bacteria

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8336..8806
DNA (471bp) protein (157aa)
Pyridoxamine 5'-phosphate oxidase-related fmn-binding protein n=1 Tax=Streptomyces tsukubaensis NRRL18488 RepID=I2MXG2_9ACTO
pyridoxamine 5'-phosphate oxidase-related FMN-binding protein Tax=RBG_16_Chloroflexi_68_14_curated
hypothetical protein
13_1_40cm_4_scaffold_682_8
RBG_16_Ignavibacteria_34_14_curated, Ignavibacteriales, Ignavibacteria, Ignavibacteriae, Bacteria

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9287..9622
DNA (336bp) protein (112aa)
Putative oxidoreductase; K07305 peptide-methionine (R)-S-oxide reductase [EC:1.8.4.12] Tax=RBG_16_Ignavibacteria_34_14_curated
Peptide methionine sulfoxide reductase MsrB n=1 Tax=Methanomethylovorans hollandica (strain DSM 15978 / NBRC 107637 / DMS1) RepID=L0KUM0_METHD
methionine-R-sulfoxide reductase
13_1_40cm_4_scaffold_682_9
RBG_13_Bathyarchaeota_46_16b_curated, Bathyarchaeota, Archaea

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10322..10891
DNA (570bp) protein (190aa)
Uncharacterized protein n=1 Tax=Thermofilum sp. 1910b RepID=S5Z8H2_9CREN
hypothetical protein Tax=RBG_13_Bathyarchaeota_46_16b_curated
hypothetical protein
13_1_40cm_4_scaffold_682_10
RBG_16_Archaea_50_20_curated, Archaea

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10895..11872
DNA (978bp) protein (326aa)
Uncharacterized protein n=1 Tax=Thermofilum pendens (strain Hrk 5) RepID=A1RZ05_THEPD
hypothetical protein Tax=RBG_16_Archaea_50_20_curated
hypothetical protein
13_1_40cm_4_scaffold_682_11
RBG_16_Archaea_50_20_curated, Archaea

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11869..12447
DNA (579bp) protein (193aa)
Uncharacterized protein n=1 Tax=Methanosarcina acetivorans (strain ATCC 35395 / DSM 2834 / JCM 12185 / C2A) RepID=Q8TSS5_METAC
RNA binding protein; K07573 exosome complex component CSL4 Tax=RBG_16_Archaea_50_20_curated
hypothetical protein
13_1_40cm_4_scaffold_682_12
RBG_13_Bathyarchaeota_46_16b_curated, Bathyarchaeota, Archaea

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12444..12731
DNA (288bp) protein (96aa)
DNA-directed RNA polymerase subunit L n=1 Tax=Thermococcus barophilus (strain DSM 11836 / MP) RepID=F0LJJ8_THEBM
DNA-directed RNA polymerase subunit L Tax=RBG_13_Bathyarchaeota_46_16b_curated
DNA-directed RNA polymerase subunit L
13_1_40cm_4_scaffold_682_13
Phascolarctobacterium succinatutens, Phascolarctobacterium, Selenomonadales, Negativicutes, Firmicutes, Bacteria

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12876..13430
DNA (555bp) protein (185aa)
HAD hydrolase, family IA, variant 3 n=1 Tax=Phascolarctobacterium succinatutens YIT 12067 RepID=E8LCZ7_9FIRM
HAD hydrolase, family IA, variant 3 {ECO:0000313|EMBL:EFY05307.1}; TaxID=626939 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Acidaminococcaceae; Phascolarctobacterium.;" source="Phas
pyrophosphatase
13_1_40cm_4_scaffold_682_14
unknown

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13596..13844
DNA (249bp) protein (83aa)

This feature has no annotations

13_1_40cm_4_scaffold_682_15
unknown

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13841..14320
DNA (480bp) protein (160aa)

This feature has no annotations

13_1_40cm_4_scaffold_682_16
RBG_16_Archaea_50_20_curated, Archaea

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14422..14688
DNA (267bp) protein (89aa)
DNA-directed RNA polymerase subunit n=1 Tax=Thermococcus litoralis DSM 5473 RepID=H3ZPL5_THELI
DNA-directed RNA polymerase subunit M Tax=RBG_16_Archaea_50_20_curated
DNA-directed RNA polymerase subunit M
13_1_40cm_4_scaffold_682_17
RBG_16_Archaea_50_20_curated, Archaea

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14694..15509
DNA (816bp) protein (272aa)
DNA polymerase sliding clamp n=2 Tax=Candidatus Nitrosoarchaeum limnia RepID=F3KLU8_9ARCH
proliferating cell nuclear antigen PcnA; K04802 proliferating cell nuclear antigen Tax=RBG_16_Archaea_50_20_curated
pcn; proliferating cell nuclear antigen
13_1_40cm_4_scaffold_682_18
RBG_16_Archaea_50_20_curated, Archaea

Not on your lists

15516..16568
DNA (1053bp) protein (351aa)
priB; DNA primase, large subunit; K02685 DNA primase large subunit [EC:2.7.7.-] Tax=RBG_16_Archaea_50_20_curated
DNA primase large subunit PriL n=1 Tax=Methanocella conradii (strain DSM 24694 / JCM 17849 / CGMCC 1.5162 / HZ254) RepID=H8I855_METCZ
priB; DNA primase, large subunit
13_1_40cm_4_scaffold_682_19
RBG_16_Archaea_50_20_curated, Archaea

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16555..17769
DNA (1215bp) protein (405aa)
putative DNA primase, small subunit; K02683 DNA primase [EC:2.7.7.-] Tax=RBG_16_Archaea_50_20_curated
DNA primase small subunit (EC:2.7.7.-)
DNA primase small subunit PriS n=1 Tax=Candidatus Caldiarchaeum subterraneum RepID=E6N7C9_9ARCH
13_1_40cm_4_scaffold_682_20
RBG_16_Bathyarchaeota_48_13_curated, Bathyarchaeota, Archaea

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17835..18398
DNA (564bp) protein (188aa)
Uncharacterized protein n=1 Tax=Candidatus Nitrosoarchaeum limnia SFB1 RepID=F3KLY9_9ARCH
hypothetical protein Tax=RBG_16_Bathyarchaeota_48_13_curated
hypothetical protein
13_1_40cm_4_scaffold_682_21
RBG_16_Archaea_50_20_curated, Archaea

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18722..18913
DNA (192bp) protein (64aa)
hypothetical protein n=1 Tax=crenarchaeote SCGC AAA261-C22 RepID=UPI00035EE393
rps27e; 30S ribosomal protein S27e; K02978 small subunit ribosomal protein S27e Tax=RBG_16_Archaea_50_20_curated
rps27e; 30S ribosomal protein S27e
13_1_40cm_4_scaffold_682_22
RBG_16_Archaea_50_20_curated, Archaea

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18928..19719
DNA (792bp) protein (264aa)
Translation initiation factor 2 subunit alpha n=1 Tax=Methanopyrus kandleri (strain AV19 / DSM 6324 / JCM 9639 / NBRC 100938) RepID=IF2A_METKA
translation initiation factor 2, subunit alpha; K03237 translation initiation factor 2 subunit 1 Tax=RBG_16_Archaea_50_20_curated
SUI2; translation initiation factor IF-2 subunit alpha
13_1_40cm_4_scaffold_682_23
RBG_16_Archaea_50_20_curated, Archaea

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comp(19885..22461)
DNA (2577bp) protein (859aa)
Putative uncharacterized protein n=1 Tax=Candidatus Caldiarchaeum subterraneum RepID=E6N5Y4_9ARCH
hypothetical protein Tax=RBG_16_Archaea_50_20_curated
hypothetical protein
13_1_40cm_4_scaffold_682_trna_1
unknown

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comp(23276..23383)
DNA (108bp)
transferRNA
13_1_40cm_4_scaffold_682_24
unknown

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23728..24015
DNA (288bp) protein (96aa)

This feature has no annotations

13_1_40cm_4_scaffold_682_25
unknown

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24012..24266
DNA (255bp) protein (85aa)

This feature has no annotations

13_1_40cm_4_scaffold_682_26
Candidatus Nitrososphaera evergladensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

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comp(24547..25557)
DNA (1011bp) protein (337aa)
Phosphate uptake regulator n=1 Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0IJW8_NITGG
phosphate uptake regulator
Phosphate uptake regulator {ECO:0000313|EMBL:AIF82534.1}; TaxID=1459636 species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Candidatus N
13_1_40cm_4_scaffold_682_27
unknown

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25848..25961
DNA (114bp) protein (38aa)

This feature has no annotations

13_1_40cm_4_scaffold_682_28
RBG_16_Euryarchaeota_41_19_curated, Euryarchaeota, Archaea

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26091..27233
DNA (1143bp) protein (381aa)
Phosphate-binding protein n=1 Tax=Candidatus Nitrosoarchaeum limnia SFB1 RepID=F3KKB4_9ARCH
phosphate ABC transporter substrate-binding protein; K02040 phosphate transport system substrate-binding protein Tax=RBG_16_Euryarchaeota_41_19_curated
pstC; phosphate ABC transporter substrate-binding protein
13_1_40cm_4_scaffold_682_29
Candidatus Nitrososphaera gargensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

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27384..28274
DNA (891bp) protein (297aa)
ABC phosphate uptake transporter, substrate-binding protein n=1 Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0IIL0_NITGG
pstS1; ABC phosphate uptake transporter, substrate-binding protein
ABC phosphate uptake transporter, substrate-binding protein {ECO:0000313|EMBL:AFU57922.1}; TaxID=1237085 species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitro
Displaying items 1-30 of 34 in total

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