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13_1_40cm_4_scaffold_7281

Search features with annotation key words

Displaying 24 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_40cm_4_scaffold_7281_1
unknown

Not on your lists

221..346
DNA (126bp) protein (42aa)

This feature has no annotations

13_1_40cm_4_scaffold_7281_2
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists

comp(1036..1845)
DNA (810bp) protein (270aa)
Fe-S type, tartrate/fumarate subfamily hydro-lyase subunit alpha (EC:4.2.1.2); K01677 fumarate hydratase subunit alpha [EC:4.2.1.2] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
Fe-S type, tartrate/fumarate subfamily hydro-lyase subunit alpha (EC:4.2.1.2); K01677 fumarate hydratase subunit alpha [EC:4.2.1.2] id=14626419 bin=bin7_NC10_sister species=Desulfurobacterium sp. TC5-1 genus=Desulfurobacterium taxon_order=Aquificales taxon_class=Aquificae phylum=Aquificae tax=bin7_NC10_sister organism_group=NC10
fumarate hydratase (EC:4.2.1.2)
13_1_40cm_4_scaffold_7281_3
RIFOXYB2_FULL_Deltaproteobacteria_66_7_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1851..2327)
DNA (477bp) protein (159aa)
hypothetical protein n=1 Tax=Acidobacteriaceae bacterium KBS 96 RepID=UPI000360F552
hypothetical protein Tax=RIFOXYB2_FULL_Deltaproteobacteria_66_7_curated
glyoxalase/bleomycin resistance protein/dioxygenase
13_1_40cm_4_scaffold_7281_4
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(2478..3410)
DNA (933bp) protein (311aa)
malate dehydrogenase, NAD-dependent; K00024 malate dehydrogenase [EC:1.1.1.37] Tax=GWA2_Rokubacteria_73_35_curated
mdh; malate dehydrogenase (EC:1.1.1.37)
Malate dehydrogenase id=3986853 bin=GWA2_Methylomirabilis_73_35 species=uncultured Desulfobacterium sp. genus=Desulfobacterium taxon_order=Desulfobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_40cm_4_scaffold_7281_5
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(3428..4690)
DNA (1263bp) protein (421aa)
icd; isocitrate dehydrogenase (EC:1.1.1.42); K00031 isocitrate dehydrogenase [EC:1.1.1.42] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
isocitrate dehydrogenase (NADP) (EC:1.1.1.42)
Isocitrate dehydrogenase [NADP] id=3986855 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=Brevibacillus taxon_order=Bacillales taxon_class=Bacilli phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_40cm_4_scaffold_7281_6
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(4690..7002)
DNA (2313bp) protein (771aa)
acnA; aconitate hydratase (EC:4.2.1.3); K01681 aconitate hydratase 1 [EC:4.2.1.3] Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
acnA; aconitate hydratase (EC:4.2.1.3)
Aconitate hydratase id=3986857 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Nitrospira defluvii genus=Nitrospira taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_40cm_4_scaffold_7281_7
unknown

Not on your lists

7215..7394
DNA (180bp) protein (60aa)

This feature has no annotations

13_1_40cm_4_scaffold_7281_8
uncultured Acidobacteria bacterium, Acidobacteria, Bacteria

Not on your lists

7425..7874
DNA (450bp) protein (150aa)
Thiol:disulfide interchange protein DsbA n=1 Tax=uncultured Acidobacteria bacterium RepID=H5SPR3_9BACT
Thiol:disulfide interchange protein DsbA {ECO:0000313|EMBL:BAL58149.1}; TaxID=171953 species="Bacteria; Acidobacteria; environmental samples.;" source="uncultured Acidobacteria bacterium.;"
DSBA oxidoreductase
13_1_40cm_4_scaffold_7281_9
unknown

Not on your lists

7871..8128
DNA (258bp) protein (86aa)

This feature has no annotations

13_1_40cm_4_scaffold_7281_10
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists

comp(8203..8919)
DNA (717bp) protein (239aa)
succinate dehydrogenase and fumarate reductase iron-sulfur protein (EC:1.3.99.1); K00245 fumarate reductase iron-sulfur subunit [EC:1.3.99.1] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
Fumarate reductase iron-sulfur subunit id=3740911 bin=GWC2_Methylomirabilis_70_24 species=unknown genus=Cupriavidus taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
succinate dehydrogenase and fumarate reductase iron-sulfur protein
13_1_40cm_4_scaffold_7281_11
Candidatus Methylomirabilis oxyfera, Candidatus Methylomirabilis, Bacteria

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comp(8931..9197)
DNA (267bp) protein (89aa)
Uncharacterized protein n=1 Tax=Candidatus Methylomirabilis oxyfera RepID=D5MJU6_9BACT
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBE67529.1}; TaxID=671143 species="Bacteria; candidate division NC10; Candidatus Methylomirabilis.;" source="Candidatus Methylomirabilis oxyfera.;"
13_1_40cm_4_scaffold_7281_12
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(9275..10156)
DNA (882bp) protein (294aa)
haloalkane dehalogenase; K01563 haloalkane dehalogenase [EC:3.8.1.5] Tax=GWA2_Rokubacteria_73_35_curated
Alpha/beta hydrolase fold protein id=1746149 bin=GWA2_Methylomirabilis_73_35 species=Geobacter sp. genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
haloalkane dehalogenase
13_1_40cm_4_scaffold_7281_13
GWB2_Deltaproteobacteria_55_19_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10239..10985
DNA (747bp) protein (249aa)
Uncharacterized protein id=3388582 bin=GWC2_Deltaproteobacteria_56_8 species=Desulfomonile tiedjei genus=Desulfomonile taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Deltaproteobacteria_56_8 organism_group=Deltaproteobacteria
hypothetical protein Tax=GWB2_Deltaproteobacteria_55_19_curated
Fis family two component sigma54 specific transcriptional regulator
13_1_40cm_4_scaffold_7281_14
unknown

Not on your lists

11044..11619
DNA (576bp) protein (192aa)

This feature has no annotations

13_1_40cm_4_scaffold_7281_15
GWC2_Rokubacteria_70_16_curated, Rokubacteria, Bacteria

Not on your lists

comp(11624..11878)
DNA (255bp) protein (85aa)
succinate dehydrogenase, hydrophobic anchor subunit (EC:1.3.5.1) Tax=GWC2_Rokubacteria_70_16_curated
succinate dehydrogenase, hydrophobic anchor subunit (EC:1.3.5.1)
Succinate dehydrogenase, hydrophobic anchor subunit id=4740798 bin=GWC2_Methylomirabilis_70_16 species=Desulfomonile tiedjei genus=Desulfomonile taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
13_1_40cm_4_scaffold_7281_16
GWA2_Rhodocyclales_65_20_curated, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11974..15105)
DNA (3132bp) protein (1044aa)
Uncharacterized protein n=1 Tax=Azospira oryzae (strain ATCC BAA-33 / DSM 13638 / PS) RepID=G8QJM1_AZOSU
hypothetical protein Tax=GWA2_Rhodocyclales_65_20_curated
hypothetical protein
13_1_40cm_4_scaffold_7281_17
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(15170..15763)
DNA (594bp) protein (198aa)
succinate dehydrogenase flavoprotein subunit (EC:1.3.99.1); K00239 succinate dehydrogenase flavoprotein subunit [EC:1.3.99.1] Tax=GWA2_Rokubacteria_73_35_curated
succinate dehydrogenase flavoprotein subunit (EC:1.3.99.1)
Succinate dehydrogenase flavoprotein subunit id=2836288 bin=GWA2_Methylomirabilis_73_35 species=Rhodococcus jostii genus=Rhodococcus taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_40cm_4_scaffold_7281_18
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(15777..16889)
DNA (1113bp) protein (371aa)
fumarate reductase, or succinate dehydrogenase, flavoprotein subunit (EC:1.3.99.1); K00244 fumarate reductase flavoprotein subunit [EC:1.3.99.1] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
L-aspartate oxidase (EC:1.4.3.16)
Putative succinate dehydrogenase flavoprotein subunit id=4740802 bin=GWC2_Methylomirabilis_70_16 species=Bordetella petrii genus=Bordetella taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
13_1_40cm_4_scaffold_7281_19
Bradyrhizobium diazoefficiens, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16893..17330)
DNA (438bp) protein (146aa)
hypothetical protein n=1 Tax=Bradyrhizobium japonicum RepID=UPI0003655BEC
hypothetical protein
Blr6749 protein {ECO:0000313|EMBL:BAC52014.1}; TaxID=224911 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium diazoeffici
13_1_40cm_4_scaffold_7281_20
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(17395..19077)
DNA (1683bp) protein (561aa)
h16_A3563; 5'-nucleotidase Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
h16_A3563; 5'-nucleotidase id=14627057 bin=bin7_NC10_sister species=unknown genus=Pandoraea taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=bin7_NC10_sister organism_group=NC10
5'-nucleotidase
13_1_40cm_4_scaffold_7281_21
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(19231..20514)
DNA (1284bp) protein (428aa)
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
Putative uncharacterized protein id=4740848 bin=GWC2_Methylomirabilis_70_16 species=Halorhodospira halophila genus=Halorhodospira taxon_order=Chromatiales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
hypothetical protein
13_1_40cm_4_scaffold_7281_22
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(20519..20851)
DNA (333bp) protein (111aa)
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
Sulfur compound chelating protein SoxZ id=4841180 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=Magnetococcus taxon_order=Magnetococcales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
sulfur oxidation protein SoxZ
13_1_40cm_4_scaffold_7281_23
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(20853..21341)
DNA (489bp) protein (163aa)
sulfur oxidation protein SoxY Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
Putative uncharacterized protein id=4841179 bin=GWA2_Methylomirabilis_73_35 species=Xanthobacter autotrophicus genus=Xanthobacter taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
sulfur oxidation protein SoxY
13_1_40cm_4_scaffold_7281_24
RLO_Deltaproteobacteria_60_19, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21338..21502)
DNA (165bp) protein (55aa)
Molydopterin dinucleotide-binding region (Fragment) n=1 Tax=uncultured prokaryote RepID=H5S8W2_9ZZZZ
molydopterin dinucleotide-binding protein Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_60_19_curated
molydopterin dinucleotide-binding region
Displaying 24 items

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