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13_1_40cm_4_scaffold_7515

Search features with annotation key words

Displaying 28 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_40cm_4_scaffold_7515_1
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

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comp(2..484)
DNA (483bp) protein (161aa)
PHP domain protein
PHP domain protein {ECO:0000313|EMBL:AHG89758.1}; TaxID=861299 species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.;"
13_1_40cm_4_scaffold_7515_2
unknown

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519..848
DNA (330bp) protein (110aa)

This feature has no annotations

13_1_40cm_4_scaffold_7515_3
unknown

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1121..1315
DNA (195bp) protein (65aa)

This feature has no annotations

13_1_40cm_4_scaffold_7515_4
Nakamurella multipartita, Nakamurella, Nakamurellales, Actinobacteria, Actinobacteria, Bacteria

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comp(1467..2168)
DNA (702bp) protein (234aa)
Putative transcriptional regulator n=1 Tax=Nakamurella multipartita (strain ATCC 700099 / DSM 44233 / JCM 9543 / Y-104) RepID=C8XFI0_NAKMY
transcriptional regulator
Putative transcriptional regulator {ECO:0000313|EMBL:ACV79957.1}; TaxID=479431 species="Bacteria; Actinobacteria; Nakamurellales; Nakamurellaceae; Nakamurella.;" source="Nakamurella multipartita (stra
13_1_40cm_4_scaffold_7515_5
RBG_19FT_COMBO_Armatimonadetes_69_19_curated, Armatimonadetes, Bacteria

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2261..3439
DNA (1179bp) protein (393aa)
FAD-dependent pyridine nucleotide-disulfide oxidoreductase id=24466825 bin=RBG_19FT_COMBO_GAL15_69_19 species=Methylobacter tundripaludum genus=Methylobacter taxon_order=Methylococcales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=RBG_19FT_COMBO_GAL15_69_19 organism_group=GAL15 organism_desc=Curation Candidate
FAD-dependent pyridine nucleotide-disulfide oxidoreductase Tax=RBG_19FT_COMBO_Armatimonadetes_69_19_curated
FAD-dependent pyridine nucleotide-disulfide oxidoreductase
13_1_40cm_4_scaffold_7515_6
Anaeromyxobacter sp. Fw109-5, Anaeromyxobacter, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(3454..3744)
DNA (291bp) protein (97aa)
Oxidoreductase molybdopterin binding n=1 Tax=Anaeromyxobacter sp. (strain Fw109-5) RepID=A7HGG3_ANADF
oxidoreductase molybdopterin binding
Oxidoreductase molybdopterin binding {ECO:0000313|EMBL:ABS27809.1}; TaxID=404589 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Cystobacterineae; Anaeromyxobacteraceae; Anaeromy
13_1_40cm_4_scaffold_7515_7
unknown

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comp(3683..4120)
DNA (438bp) protein (146aa)

This feature has no annotations

13_1_40cm_4_scaffold_7515_8
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

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comp(4113..4703)
DNA (591bp) protein (197aa)
Uncharacterized protein n=1 Tax=Corallococcus coralloides (strain ATCC 25202 / DSM 2259 / NBRC 100086 / M2) RepID=H8MWF5_CORCM
Di-heme cytochrome, transmembrane
Di-heme cytochrome, transmembrane {ECO:0000313|EMBL:AHG87864.1}; TaxID=861299 species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.;"
13_1_40cm_4_scaffold_7515_9
unknown

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4869..5384
DNA (516bp) protein (172aa)

This feature has no annotations

13_1_40cm_4_scaffold_7515_10
RBG_16_Deltaproteobacteria_71_12_curated, Deltaproteobacteria, Proteobacteria, Bacteria

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5390..6793
DNA (1404bp) protein (468aa)
5-methylthioadenosine/S-adenosylhomocysteine deaminase n=1 Tax=Kyrpidia tusciae (strain DSM 2912 / NBRC 15312 / T2) RepID=D5WQU8_KYRT2
amidohydrolase domain-containing protein Tax=RBG_16_Deltaproteobacteria_71_12_curated
amidohydrolase
13_1_40cm_4_scaffold_7515_11
RIFCSPLOWO2_12_FULL_Acidobacteria_67_14b_curated, Acidobacteria, Bacteria

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6735..7727
DNA (993bp) protein (331aa)
hypothetical protein n=1 Tax=Acidobacteriaceae bacterium KBS 83 RepID=UPI000364E6A7
cytochrome c, class I Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_67_14b_curated
cytochrome c, class I
13_1_40cm_4_scaffold_7515_12
Streptomyces griseus, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

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comp(7672..8697)
DNA (1026bp) protein (342aa)
Transcriptional regulator, LysR family n=2 Tax=Streptomyces griseus RepID=G0PTK8_STRGR
LysR family transcriptional regulator
Transcriptional regulator, LysR family {ECO:0000313|EMBL:EGE40990.1}; TaxID=649189 species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces griseus
13_1_40cm_4_scaffold_7515_13

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8787..9491
DNA (705bp) protein (235aa)
Excisionase/Xis, DNA-binding n=1 Tax=delta proteobacterium MLMS-1 RepID=Q1NUW0_9DELT
Transcriptional repressor of DCM dehalogenase {ECO:0000313|EMBL:AHN97947.1}; TaxID=1447241 species="Bacteria; environmental samples.;" source="uncultured bacterium lac160.;"
excisionase family DNA binding domain-containing protein
13_1_40cm_4_scaffold_7515_14

Not on your lists

9609..10193
DNA (585bp) protein (195aa)
Candidate response regulator, NarL n=1 Tax=Ramlibacter tataouinensis (strain ATCC BAA-407 / DSM 14655 / LMG 21543 / TTB310) RepID=F5XX74_RAMTT
Uncharacterized protein {ECO:0000313|EMBL:KKL16352.1}; Flags: Fragment;; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
response regulator NarL
13_1_40cm_4_scaffold_7515_15
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

comp(10214..11836)
DNA (1623bp) protein (541aa)
Methyl-accepting chemotaxis protein n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A3H1_GEMAT
methyl-accepting chemotaxis protein; K03406 methyl-accepting chemotaxis protein Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
methyl-accepting chemotaxis protein
13_1_40cm_4_scaffold_7515_16
R_Gemmatimonadetes_71_11, Gemmatimonadetes, Bacteria

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comp(11892..14201)
DNA (2310bp) protein (770aa)
Uncharacterized protein n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A9E2_GEMAT
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Gemmatimonadetes_71_11_curated
hypothetical protein
13_1_40cm_4_scaffold_7515_17
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

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comp(14330..15544)
DNA (1215bp) protein (405aa)
Putative macrolide efflux ABC transporter permease n=3 Tax=Myxococcus RepID=F8CKF2_MYXFH id=5224471 bin=16ft_combo_ws3_JS1 species=unknown genus=Myxococcus taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
putative macrolide efflux ABC transporter permease; K02004 putative ABC transport system permease protein Tax=RBG_16_RIF_WS3X_71_46_curated
putative macrolide efflux ABC transporter permease
13_1_40cm_4_scaffold_7515_18
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

comp(15547..16944)
DNA (1398bp) protein (466aa)
Macrolide-specific efflux protein MacA n=2 Tax=Stigmatella aurantiaca (strain DW4/3-1) RepID=E3FQP0_STIAD id=5224472 bin=16ft_combo_ws3_JS1 species=Stigmatella aurantiaca genus=Stigmatella taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
macrolide-specific efflux protein maca; K02005 HlyD family secretion protein Tax=RBG_16_RIF_WS3X_71_46_curated
RND family efflux transporter MFP subunit
13_1_40cm_4_scaffold_7515_19
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

comp(17117..18481)
DNA (1365bp) protein (455aa)
Macrolide-specific efflux protein MacA n=2 Tax=Stigmatella aurantiaca (strain DW4/3-1) RepID=E3FQP0_STIAD id=5224472 bin=16ft_combo_ws3_JS1 species=Stigmatella aurantiaca genus=Stigmatella taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
macrolide-specific efflux protein maca; K02005 HlyD family secretion protein Tax=RBG_16_RIF_WS3X_71_46_curated
efflux transporter, RND family, MFP subunit
13_1_40cm_4_scaffold_7515_20
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

comp(18478..19203)
DNA (726bp) protein (242aa)
Putative ABC transporter ATP-binding protein n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A7H8_GEMAT
putative ABC transporter ATP-binding protein; K02003 putative ABC transport system ATP-binding protein Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
putative ABC transporter ATP-binding protein
13_1_40cm_4_scaffold_7515_21
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

comp(19218..20528)
DNA (1311bp) protein (437aa)
Putative outer membrane macrolide efflux protein n=2 Tax=Myxococcus RepID=Q1D4Q0_MYXXD id=5224473 bin=16ft_combo_ws3_JS1 species=unknown genus=Myxococcus taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
outer membrane macrolide efflux protein Tax=RBG_16_RIF_WS3X_71_46_curated
outer membrane efflux protein
13_1_40cm_4_scaffold_7515_22
R_Gemmatimonadetes_71_11, Gemmatimonadetes, Bacteria

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comp(20525..20926)
DNA (402bp) protein (134aa)
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Gemmatimonadetes_71_11_curated
13_1_40cm_4_scaffold_7515_23
unknown

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comp(20942..21277)
DNA (336bp) protein (112aa)

This feature has no annotations

13_1_40cm_4_scaffold_7515_24
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

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comp(21274..21423)
DNA (150bp) protein (50aa)
RNA polymerase ECF-type sigma factor; K03088 RNA polymerase sigma-70 factor, ECF subfamily Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
RNA polymerase sigma factor, sigma-70 family
13_1_40cm_4_scaffold_7515_25
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

comp(21810..23255)
DNA (1446bp) protein (482aa)
Cardiolipin synthetase n=1 Tax=Opitutus terrae (strain DSM 11246 / PB90-1) RepID=B1ZSJ0_OPITP
phospholipase D/transphosphatidylase Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
cardiolipin synthetase
13_1_40cm_4_scaffold_7515_26
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

comp(23252..23893)
DNA (642bp) protein (214aa)
Metal dependent phosphohydrolase n=1 Tax=uncultured candidate division OP1 bacterium RepID=H5SJK6_9BACT
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
metal dependent phosphohydrolase
13_1_40cm_4_scaffold_7515_27
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

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comp(23890..25716)
DNA (1827bp) protein (609aa)
Asparagine synthetase n=1 Tax=Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10) RepID=L0DE87_SINAD
asparagine synthase Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
asparagine synthase
13_1_40cm_4_scaffold_7515_28
unknown

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comp(25720..25953)
DNA (234bp) protein (78aa)

This feature has no annotations

Displaying 28 items

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