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13_1_40cm_4_scaffold_755

Search features with annotation key words

Displaying 28 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_40cm_4_scaffold_755_1
unknown

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3..671
DNA (669bp) protein (223aa)

This feature has no annotations

13_1_40cm_4_scaffold_755_2
Sulfolobus tokodaii, Sulfolobus, Sulfolobales, Thermoprotei, Crenarchaeota, Archaea

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comp(775..1602)
DNA (828bp) protein (276aa)
uppP; UDP pyrophosphate phosphatase (EC:3.6.1.27)
Undecaprenyl-diphosphatase {ECO:0000255|HAMAP-Rule:MF_01006}; EC=3.6.1.27 {ECO:0000255|HAMAP-Rule:MF_01006};; Undecaprenyl pyrophosphate phosphatase {ECO:0000255|HAMAP-Rule:MF_01006}; TaxID=273063 spe
Undecaprenyl-diphosphatase n=1 Tax=Sulfolobus tokodaii (strain DSM 16993 / JCM 10545 / NBRC 100140 / 7) RepID=UPPP_SULTO
13_1_40cm_4_scaffold_755_3
unknown

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comp(1733..2182)
DNA (450bp) protein (150aa)

This feature has no annotations

13_1_40cm_4_scaffold_755_4
Pyrolobus fumarii, Pyrolobus, Desulfurococcales, Thermoprotei, Crenarchaeota, Archaea

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2302..4236
DNA (1935bp) protein (645aa)
Acetate/CoA ligase n=1 Tax=Pyrolobus fumarii (strain DSM 11204 / 1A) RepID=G0EEM1_PYRF1
acetate/CoA ligase
Acetate/CoA ligase {ECO:0000313|EMBL:AEM38843.1}; TaxID=694429 species="Archaea; Crenarchaeota; Thermoprotei; Desulfurococcales; Pyrodictiaceae; Pyrolobus.;" source="Pyrolobus fumarii (strain DSM 1120
13_1_40cm_4_scaffold_755_5
unknown

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4392..4586
DNA (195bp) protein (65aa)

This feature has no annotations

13_1_40cm_4_scaffold_755_6
unknown

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4703..4915
DNA (213bp) protein (71aa)

This feature has no annotations

13_1_40cm_4_scaffold_755_7
RBG_16_Euryarchaeota_68_13_curated, Euryarchaeota, Archaea

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comp(5064..6371)
DNA (1308bp) protein (436aa)
Oligopeptide/dipeptide ABC transporter, ATPase subunit n=1 Tax=Streptomyces cattleya (strain ATCC 35852 / DSM 46488 / JCM 4925 / NBRC 14057 / NRRL 8057) RepID=F8K2L4_STREN
oligopeptide/dipeptide ABC transporter ATPase Tax=RBG_16_Euryarchaeota_68_13_curated
oligopeptide/dipeptide ABC transporter ATPase
13_1_40cm_4_scaffold_755_8
RBG_16_Euryarchaeota_67_27_curated, Euryarchaeota, Archaea

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comp(6368..7324)
DNA (957bp) protein (319aa)
oppD; oligopeptide ABC transporter ATP-binding protein Tax=RBG_16_Euryarchaeota_67_27_curated
oppD; oligopeptide ABC transporter ATP-binding protein id=24578966 bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=Actinopolymorpha alba genus=Actinopolymorpha taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
oligopeptide/dipeptide ABC transporter ATPase
13_1_40cm_4_scaffold_755_9
RBG_19FT_COMBO_Euryarchaeota_69_17_curated, Euryarchaeota, Archaea

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comp(7325..8248)
DNA (924bp) protein (308aa)
binding-protein-dependent transport systems inner membrane component; K02034 peptide/nickel transport system permease protein id=24578967 bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=Thermosipho melanesiensis genus=Thermosipho taxon_order=Thermotogales taxon_class=Thermotogae phylum=Thermotogae tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
binding-protein-dependent transport systems inner membrane component; K02034 peptide/nickel transport system permease protein Tax=RBG_19FT_COMBO_Euryarchaeota_69_17_curated
peptide ABC transporter permease
13_1_40cm_4_scaffold_755_10
RBG_16_Euryarchaeota_67_27_curated, Euryarchaeota, Archaea

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comp(8249..9289)
DNA (1041bp) protein (347aa)
peptide ABC transporter permease n=1 Tax=Mastigocladopsis repens RepID=UPI0003114471
permease of oligopeptide ABC transporter; K02033 peptide/nickel transport system permease protein Tax=RBG_16_Euryarchaeota_67_27_curated
ABC-type dipeptide/oligopeptide/nickel transport system, permease component
13_1_40cm_4_scaffold_755_11
RBG_19FT_COMBO_Euryarchaeota_69_17_curated, Euryarchaeota, Archaea

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comp(9357..11063)
DNA (1707bp) protein (569aa)
dppA; peptide ABC transporter substrate-binding protein; K02035 peptide/nickel transport system substrate-binding protein id=24578969 bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=Archaeoglobus fulgidus genus=Archaeoglobus taxon_order=Archaeoglobales taxon_class=Archaeoglobi phylum=Euryarchaeota tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
dppA; peptide ABC transporter substrate-binding protein; K02035 peptide/nickel transport system substrate-binding protein Tax=RBG_19FT_COMBO_Euryarchaeota_69_17_curated
dppA; peptide ABC transporter substrate-binding protein
13_1_40cm_4_scaffold_755_12
Streptomyces tsukubaensis, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

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comp(11227..11610)
DNA (384bp) protein (128aa)
Uncharacterized protein n=1 Tax=Streptomyces tsukubaensis NRRL18488 RepID=I2MYP1_9ACTO
Uncharacterized protein {ECO:0000313|EMBL:EIF89888.1}; TaxID=1114943 species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces tsukubaensis NRRL18488
hypothetical protein
13_1_40cm_4_scaffold_755_13
Methanosphaerula palustris, Methanosphaerula, Methanomicrobiales, Methanomicrobia, Euryarchaeota, Archaea

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11726..12121
DNA (396bp) protein (132aa)
Transcriptional regulator, HxlR family n=1 Tax=Methanosphaerula palustris (strain ATCC BAA-1556 / DSM 19958 / E1-9c) RepID=B8GG12_METPE
HxlR family transcriptional regulator
Transcriptional regulator, HxlR family {ECO:0000313|EMBL:ACL16086.1}; TaxID=521011 species="Archaea; Euryarchaeota; Methanomicrobia; Methanomicrobiales; Methanoregulaceae; Methanosphaerula.;" source="
13_1_40cm_4_scaffold_755_14
RBG_16_Archaea_50_20_curated, Archaea

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comp(12585..13361)
DNA (777bp) protein (259aa)
hypothetical protein n=2 Tax=unclassified Crenarchaeota RepID=UPI0003624E5C
hypothetical protein Tax=RBG_16_Archaea_50_20_curated
cobalt/nickel ABC transporter permease
13_1_40cm_4_scaffold_755_15
RBG_16_Bathyarchaeota_48_13_curated, Bathyarchaeota, Archaea

Not on your lists

comp(13342..14139)
DNA (798bp) protein (266aa)
Cobalt/nickel ABC transporter ATP-binding protein n=1 Tax=Candidatus Caldiarchaeum subterraneum RepID=E6N8Z4_9ARCH
hypothetical protein Tax=RBG_16_Bathyarchaeota_48_13_curated
cobalt/nickel ABC transporter ATP-binding protein
13_1_40cm_4_scaffold_755_16
RBG_16_Archaea_50_20_curated, Archaea

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comp(14181..15047)
DNA (867bp) protein (289aa)
Cobalt/nickel ABC transporter ATP-binding protein n=1 Tax=Candidatus Caldiarchaeum subterraneum RepID=E6N8Z3_9ARCH
ABC transporter; K02006 cobalt/nickel transport system ATP-binding protein Tax=RBG_16_Archaea_50_20_curated
cobalt/nickel ABC transporter ATP-binding protein
13_1_40cm_4_scaffold_755_17
RBG_13_Bathyarchaeota_46_16b_curated, Bathyarchaeota, Archaea

Not on your lists

comp(15108..16067)
DNA (960bp) protein (320aa)
Predicted phosphoesterase, DHH family n=1 Tax=Hyperthermus butylicus (strain DSM 5456 / JCM 9403) RepID=A2BKC6_HYPBU
DHH family phosphoesterase; K06881 phosphoesterase RecJ domain-containing protein Tax=RBG_13_Bathyarchaeota_46_16b_curated
DHH family phosphoesterase
13_1_40cm_4_scaffold_755_18
RBG_16_Archaea_50_20_curated, Archaea

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comp(16150..16572)
DNA (423bp) protein (141aa)
Prefoldin subunit beta n=1 Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0ID44_NITGG
pfdB; prefoldin, subunit beta Tax=RBG_16_Archaea_50_20_curated
pfdB; prefoldin, subunit beta
13_1_40cm_4_scaffold_755_19
RBG_16_Archaea_50_20_curated, Archaea

Not on your lists

comp(16806..17273)
DNA (468bp) protein (156aa)
50S ribosomal protein L37Ae n=1 Tax=Thermofilum sp. 1910b RepID=S5ZKQ1_9CREN
rpl37ae; 50S ribosomal protein L37Ae; K02921 large subunit ribosomal protein L37Ae Tax=RBG_16_Archaea_50_20_curated
50S ribosomal protein L37
13_1_40cm_4_scaffold_755_20
RBG_16_Archaea_50_20_curated, Archaea

Not on your lists

comp(17273..18091)
DNA (819bp) protein (273aa)
Exosome complex component Rrp42 n=1 Tax=Pyrococcus yayanosii (strain CH1 / JCM 16557) RepID=F8AH19_PYRYC
exosome complex RNA-binding protein Rrp42; K12589 exosome complex component RRP42 Tax=RBG_16_Archaea_50_20_curated
exosome complex RNA-binding protein Rrp42
13_1_40cm_4_scaffold_755_21
RBG_16_Archaea_50_20_curated, Archaea

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comp(18091..18858)
DNA (768bp) protein (256aa)
Exosome complex component Rrp41 n=1 Tax=Thermococcus litoralis DSM 5473 RepID=H3ZKB6_THELI
rph; exosome complex exonuclease Rrp41; K11600 exosome complex component RRP41 Tax=RBG_16_Archaea_50_20_curated
exosome complex exonuclease Rrp41
13_1_40cm_4_scaffold_755_22
RBG_16_Archaea_50_20_curated, Archaea

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comp(18836..19549)
DNA (714bp) protein (238aa)
Exosome complex component Rrp4 n=1 Tax=Methanobacterium formicicum DSM 3637 RepID=K2RB40_METFO
KH domain containing protein; K03679 exosome complex component RRP4 Tax=RBG_16_Archaea_50_20_curated
putative exosome complex RNA-binding protein 1
13_1_40cm_4_scaffold_755_23
RBG_16_Archaea_50_20_curated, Archaea

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comp(19561..20220)
DNA (660bp) protein (220aa)
Putative ribosome maturation protein SDO1 n=1 Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0IJH0_NITGG
ribosome maturation protein SDO1 Tax=RBG_16_Archaea_50_20_curated
putative ribosome maturation protein SDO1
13_1_40cm_4_scaffold_755_24
RBG_16_Archaea_50_20_curated, Archaea

Not on your lists

comp(20217..20960)
DNA (744bp) protein (248aa)
psmA; proteasome subunit alpha (EC:3.4.25.1); K03432 proteasome alpha subunit [EC:3.4.25.1] Tax=RBG_16_Archaea_50_20_curated
proteasome alpha subunit (EC:3.4.25.1)
Proteasome alpha subunit n=1 Tax=Candidatus Caldiarchaeum subterraneum RepID=E6N8Y4_9ARCH
13_1_40cm_4_scaffold_755_25
RBG_13_Bathyarchaeota_52_12_curated, Bathyarchaeota, Archaea

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comp(21180..21635)
DNA (456bp) protein (152aa)
Putative uncharacterized protein PH1876 n=1 Tax=Pyrococcus horikoshii (strain ATCC 700860 / DSM 12428 / JCM 9974 / NBRC 100139 / OT-3) RepID=O59544_PYRHO
hypothetical protein Tax=RBG_13_Bathyarchaeota_52_12_curated
hypothetical protein
13_1_40cm_4_scaffold_755_26
RBG_13_Bathyarchaeota_46_16b_curated, Bathyarchaeota, Archaea

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21687..22064
DNA (378bp) protein (126aa)
peptidyl-tRNA hydrolase; K04794 peptidyl-tRNA hydrolase, PTH2 family [EC:3.1.1.29] Tax=RBG_13_Bathyarchaeota_46_16b_curated
Peptidyl-tRNA hydrolase n=1 Tax=Thermococcus barophilus (strain DSM 11836 / MP) RepID=F0LL75_THEBM
peptidyl-tRNA hydrolase
13_1_40cm_4_scaffold_755_27
RBG_16_Archaea_50_20_curated, Archaea

Not on your lists

comp(22038..22415)
DNA (378bp) protein (126aa)
Marine sediment metagenome DNA, contig: S12H4_L00878 Tax=RBG_16_Archaea_50_20_curated
13_1_40cm_4_scaffold_755_28
unknown

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comp(22412..22591)
DNA (180bp) protein (60aa)

This feature has no annotations

Displaying 28 items

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