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13_1_40cm_4_scaffold_760

Search features with annotation key words

Displaying items 1-30 of 33 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_40cm_4_scaffold_760_1
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(3..536)
DNA (534bp) protein (178aa)
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
hypothetical protein id=14627784 bin=bin7_NC10_sister species=Chlorobium ferrooxidans genus=Chlorobium taxon_order=Chlorobiales taxon_class=Chlorobia phylum=Chlorobi tax=bin7_NC10_sister organism_group=NC10
hypothetical protein
13_1_40cm_4_scaffold_760_2
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(572..1948)
DNA (1377bp) protein (459aa)
UbiD family decarboxylase Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
UbiD decarboxylase family protein id=4827625 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=Desulfosporosinus taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
UbiD family decarboxylase
13_1_40cm_4_scaffold_760_3
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1976..2773)
DNA (798bp) protein (266aa)
Uncharacterized protein n=1 Tax=Nitrosomonas eutropha (strain C91) RepID=Q0AFH7_NITEC
Uncharacterized protein {ECO:0000313|EMBL:KIO50251.1}; TaxID=58133 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira sp.
hypothetical protein
13_1_40cm_4_scaffold_760_4
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(3086..3307)
DNA (222bp) protein (74aa)
Oxidoreductase domain protein id=4827665 bin=GWA2_Methylomirabilis_73_35 species=Starkeya novella genus=Starkeya taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
oxidoreductase domain-containing protein Tax=GWA2_Rokubacteria_73_35_curated
oxidoreductase domain-containing protein
13_1_40cm_4_scaffold_760_5
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

3398..4162
DNA (765bp) protein (255aa)
IclR family transcriptional regulator Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
Transcriptional regulator, IclR family id=3033633 bin=GWC2_Methylomirabilis_70_16 species=Carboxydothermus hydrogenoformans genus=Carboxydothermus taxon_order=Thermoanaerobacterales taxon_class=Clostridia phylum=Firmicutes tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
IclR family transcriptional regulator
13_1_40cm_4_scaffold_760_6
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

4176..5411
DNA (1236bp) protein (412aa)
aminopeptidase (EC:3.4.13.9); K01271 Xaa-Pro dipeptidase [EC:3.4.13.9] Tax=GWA2_Rokubacteria_73_35_curated
Metallopeptidase family M24 protein id=4827678 bin=GWA2_Methylomirabilis_73_35 species=uncultured bacterium CSL12 genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
metallopeptidase, family M24
13_1_40cm_4_scaffold_760_7
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

5414..6442
DNA (1029bp) protein (343aa)
gutB; sorbitol dehydrogenase; K00008 L-iditol 2-dehydrogenase [EC:1.1.1.14] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
gutB; sorbitol dehydrogenase (EC:1.1.1.14)
Zn-dependent alcohol dehydrogenase (Fragment) id=4827702 bin=GWA2_Methylomirabilis_73_35 species=uncultured bacterium CSL12 genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_40cm_4_scaffold_760_8
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

6426..7730
DNA (1305bp) protein (435aa)
phosphoenolpyruvate synthase; K01007 pyruvate, water dikinase [EC:2.7.9.2] Tax=GWA2_Rokubacteria_73_35_curated
ppsA2; phosphoenolpyruvate synthetase (EC:2.7.9.2)
Phosphoenolpyruvate synthase id=4827704 bin=GWA2_Methylomirabilis_73_35 species=Ammonifex degensii genus=Ammonifex taxon_order=Thermoanaerobacterales taxon_class=Clostridia phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_40cm_4_scaffold_760_9
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(7731..8615)
DNA (885bp) protein (295aa)
garR; 2-hydroxy-3-oxopropionate reductase; K00042 2-hydroxy-3-oxopropionate reductase [EC:1.1.1.60] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
2-hydroxy-3-oxopropionate reductase id=4827654 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=Amycolatopsis taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
6-phosphogluconate dehydrogenase NAD-binding protein
13_1_40cm_4_scaffold_760_10
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(8627..9319)
DNA (693bp) protein (231aa)
ABC transporter-like protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
ABC transporter related id=4827655 bin=GWA2_Methylomirabilis_73_35 species=Rubrobacter xylanophilus genus=Rubrobacter taxon_order=Rubrobacterales taxon_class=Actinobacteria phylum=Actinobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
ABC transporter
13_1_40cm_4_scaffold_760_11
R_Rokubacteria_68_19, Rokubacteria, Bacteria

Not on your lists

comp(9319..10074)
DNA (756bp) protein (252aa)
ABC transporter permease; K01995 branched-chain amino acid transport system ATP-binding protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_68_19_curated
ABC transporter permease protein id=3033655 bin=GWC2_Methylomirabilis_70_16 species=Thermomicrobium roseum genus=Thermomicrobium taxon_order=Thermomicrobiales taxon_class=Thermomicrobia phylum=Chloroflexi tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
amino acid/amide ABC transporter ATP-binding protein 1, HAAT family
13_1_40cm_4_scaffold_760_12
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(10100..12292)
DNA (2193bp) protein (731aa)
Extracellular ligand-binding receptor id=4827657 bin=GWA2_Methylomirabilis_73_35 species=beta proteobacterium CB genus=unknown taxon_order=unknown taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
Extracellular ligand-binding receptor Tax=GWA2_Rokubacteria_73_35_curated
Extracellular ligand-binding receptor
13_1_40cm_4_scaffold_760_13
R_Rokubacteria_68_19, Rokubacteria, Bacteria

Not on your lists

comp(12292..13146)
DNA (855bp) protein (285aa)
amino acid/amide ABC transporter membrane protein 1, HAAT family Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_68_19_curated
Amino acid/amide ABC transporter membrane protein 1, HAAT family id=4547724 bin=GWF2_Methylomirabilis_70_14 species=Desulfomonile tiedjei genus=Desulfomonile taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
amino acid/amide ABC transporter membrane protein 1, HAAT family
13_1_40cm_4_scaffold_760_14
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(13154..14215)
DNA (1062bp) protein (354aa)
aminocarboxymuconate-semialdehyde decarboxylase Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Putative TIM-barrel fold metal-dependent hydrolase id=3830378 bin=GWA2_Methylomirabilis_73_35 species=Pseudomonas sp. GM67 genus=Pseudomonas taxon_order=Pseudomonadales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
amidohydrolase family protein
13_1_40cm_4_scaffold_760_15
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

14230..15099
DNA (870bp) protein (290aa)
Uncharacterized conserved protein id=3830375 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=Janthinobacterium taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein Tax=GWA2_Rokubacteria_73_35_curated
hypothetical protein
13_1_40cm_4_scaffold_760_16
GWC2_Rokubacteria_70_16_curated, Rokubacteria, Bacteria

Not on your lists

comp(15083..17002)
DNA (1920bp) protein (640aa)
Putative uncharacterized protein id=2961880 bin=GWC2_Methylomirabilis_70_16 species=uncultured marine microorganism HF4000_ANIW93N21 genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
hypothetical protein Tax=GWC2_Rokubacteria_70_16_curated
hypothetical protein
13_1_40cm_4_scaffold_760_17
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(17002..18000)
DNA (999bp) protein (333aa)
D-isomer specific 2-hydroxyacid dehydrogenase Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding id=3830373 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Solibacter usitatus genus=Candidatus Solibacter taxon_order=Solibacterales taxon_class=Solibacteres phylum=Acidobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
D-isomer specific 2-hydroxyacid dehydrogenase
13_1_40cm_4_scaffold_760_18
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(18086..19300)
DNA (1215bp) protein (405aa)
serine--pyruvate transaminase (EC:2.6.1.51) Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
serine--pyruvate transaminase (EC:2.6.1.51)
Serine--pyruvate transaminase id=3830371 bin=GWA2_Methylomirabilis_73_35 species=Methanobacterium sp. genus=Methanobacterium taxon_order=Methanobacteriales taxon_class=Methanobacteria phylum=Euryarchaeota tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_40cm_4_scaffold_760_19
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(19440..19715)
DNA (276bp) protein (92aa)
lipid A biosynthesis domain-containing protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Putative membrane protein id=3830370 bin=GWA2_Methylomirabilis_73_35 species=uncultured organism genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
lipid A biosynthesis domain-containing protein
13_1_40cm_4_scaffold_760_20
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(19792..20145)
DNA (354bp) protein (118aa)
transcriptional regulator y4dJ Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
transcriptional regulator y4dJ id=3830287 bin=GWA2_Methylomirabilis_73_35 species=Paenibacillus elgii genus=Paenibacillus taxon_order=Bacillales taxon_class=Bacilli phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
transcriptional regulator
13_1_40cm_4_scaffold_760_21
RBG_13_Deltaproteobacteria_65_10_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20284..20592)
DNA (309bp) protein (103aa)
dioxygenase, ferredoxin subunit Tax=RBG_13_Deltaproteobacteria_65_10_curated
dioxygenase, ferredoxin subunit id=14430310 bin=bin3_NC10 species=Candidatus Nitrospira defluvii genus=Nitrospira taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=bin3_NC10 organism_group=NC10
dioxygenase, ferredoxin subunit
13_1_40cm_4_scaffold_760_22
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(20592..20936)
DNA (345bp) protein (115aa)
Periplasmic thiol:disulfide interchange protein DsbA id=3830285 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
DSBA oxidoreductase Tax=GWA2_Rokubacteria_73_35_curated
DSBA oxidoreductase
13_1_40cm_4_scaffold_760_23
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(21030..21170)
DNA (141bp) protein (47aa)
hypothetical protein Tax=GWA2_Rokubacteria_73_35_curated
13_1_40cm_4_scaffold_760_24
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

21282..21740
DNA (459bp) protein (153aa)
DoxX family protein; K15977 putative oxidoreductase Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
DoxX family protein id=3830283 bin=GWA2_Methylomirabilis_73_35 species=Geobacter lovleyi genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein
13_1_40cm_4_scaffold_760_25
R_Rokubacteria_68_19, Rokubacteria, Bacteria

Not on your lists

21747..22112
DNA (366bp) protein (122aa)
hypothetical protein id=14625221 bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin7_NC10_sister organism_group=NC10
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_68_19_curated
hypothetical protein
13_1_40cm_4_scaffold_760_26
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(22122..22889)
DNA (768bp) protein (256aa)
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
hypothetical protein id=14627875 bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin7_NC10_sister organism_group=NC10
hypothetical protein
13_1_40cm_4_scaffold_760_27
R_Rokubacteria_69_13, Rokubacteria, Bacteria

Not on your lists

23000..23686
DNA (687bp) protein (229aa)
hypothetical protein; K07147 Tax=RIFCSPHIGHO2_02_FULL_Rokubacteria_69_13_curated
Molybdopterin binding protein id=3831000 bin=GWF2_Methylomirabilis_70_14 species=uncultured bacterium F25-01 genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein
13_1_40cm_4_scaffold_760_28
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(23838..24662)
DNA (825bp) protein (275aa)
alpha/beta hydrolase fold protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
alpha/beta hydrolase fold protein id=14627593 bin=bin7_NC10_sister species=Acidovorax avenae genus=Acidovorax taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=bin7_NC10_sister organism_group=NC10
alpha/beta hydrolase
13_1_40cm_4_scaffold_760_29
Nitrosospira lacus, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24760..25371
DNA (612bp) protein (204aa)
Uncharacterized protein n=1 Tax=Nitrosospira sp. APG3 RepID=M5DIT1_9PROT
Uncharacterized protein {ECO:0000313|EMBL:CCU62594.1}; TaxID=1288494 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira la
13_1_40cm_4_scaffold_760_30
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

25435..26340
DNA (906bp) protein (302aa)
czcD; cation efflux system protein czcD; K03295 cation efflux system protein, CDF family Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Cobalt-zinc-cadmium resistance protein CzcD id=2973321 bin=GWF2_Methylomirabilis_70_14 species=Mesorhizobium sp. STM 4661 genus=Mesorhizobium taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
czcD; cation efflux system protein czcD
Displaying items 1-30 of 33 in total

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