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13_1_40cm_4_scaffold_7707

Search features with annotation key words

Displaying 23 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_40cm_4_scaffold_7707_1
unknown

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1..90
-----------------
DNA (90bp)
protein (30aa)

This feature has no annotations

13_1_40cm_4_scaffold_7707_2
Gemmatimonas aurantiaca, Gemmatimonas, Gemmatimonadales, Gemmatimonadetes, Gemmatimonadetes, Bacteria

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87..1397
-----------------
DNA (1311bp)
protein (437aa)
Uncharacterized protein n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A6I4_GEMAT
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:BAH37844.1}; TaxID=379066 species="Bacteria; Gemmatimonadetes; Gemmatimonadales; Gemmatimonadaceae; Gemmatimonas.;" source="Gemmatimonas aurantiaca (strain T-
13_1_40cm_4_scaffold_7707_3
Candidatus Entotheonella sp. TSY1, Candidatus Entotheonella, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(1415..2167)
-----------------
DNA (753bp)
protein (251aa)
Uncharacterized protein n=1 Tax=Rhizobium sp. CF080 RepID=J2J4F5_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:ETW98875.1}; TaxID=1429438 species="Bacteria; Proteobacteria; Deltaproteobacteria; Candidatus Entotheonella.;" source="Candidatus Entotheonella sp. TSY1.;"
CalU12 protein
13_1_40cm_4_scaffold_7707_4
Candidatus Entotheonella sp. TSY2, Candidatus Entotheonella, Deltaproteobacteria, Proteobacteria, Bacteria

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2249..2629
-----------------
DNA (381bp)
protein (127aa)
Regulatory protein ArsR n=1 Tax=Anaeromyxobacter sp. (strain Fw109-5) RepID=A7H7X0_ANADF
ArsR family transcriptional regulator {ECO:0000313|EMBL:ETX05304.1}; TaxID=1429439 species="Bacteria; Proteobacteria; Deltaproteobacteria; Candidatus Entotheonella.;" source="Candidatus Entotheonella
regulatory protein ArsR
13_1_40cm_4_scaffold_7707_5
R_Gammaproteobacteria_63_22, Gammaproteobacteria, Proteobacteria, Bacteria

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2659..3060
-----------------
DNA (402bp)
protein (134aa)
Uncharacterized protein n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4VVY8_9GAMM
hypothetical protein Tax=RIFCSPHIGHO2_12_FULL_Gammaproteobacteria_63_22_curated
hypothetical protein
13_1_40cm_4_scaffold_7707_6
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

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3060..3818
-----------------
DNA (759bp)
protein (253aa)
Uncharacterized protein n=1 Tax=Cupriavidus basilensis OR16 RepID=H1S465_9BURK
hypothetical protein Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
hypothetical protein
13_1_40cm_4_scaffold_7707_7
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

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comp(3885..4268)
-----------------
DNA (384bp)
protein (128aa)
blue (type 1) copper domain protein
Blue (Type 1) copper domain protein {ECO:0000313|EMBL:AHG92676.1}; TaxID=861299 species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.;"
13_1_40cm_4_scaffold_7707_8
Sorangium cellulosum, Sorangium, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

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4651..5604
-----------------
DNA (954bp)
protein (318aa)
Uncharacterized protein n=1 Tax=Sorangium cellulosum So0157-2 RepID=S4Y9C8_SORCE
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGP40926.1}; TaxID=1254432 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Sorangiineae; Polyangiaceae; Sorangium.;" source="Sorangium c
13_1_40cm_4_scaffold_7707_9

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comp(5641..8049)
-----------------
DNA (2409bp)
protein (803aa)
Uncharacterized protein {ECO:0000313|EMBL:AHN97884.1}; TaxID=1447237 species="Bacteria; environmental samples.;" source="uncultured bacterium lac127.;"
PAS/PAC sensor hybrid histidine kinase id=4942499 bin=GWC2_Methylomirabilis_70_16 species=unknown genus=Anaeromyxobacter taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
multi-sensor hybrid histidine kinase
13_1_40cm_4_scaffold_7707_10
GWC2_Gemmatimonadetes_71_10_curated, Gemmatimonadetes, Bacteria

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8162..8506
-----------------
DNA (345bp)
protein (115aa)
PadR family transcripitonal regulator n=1 Tax=Acidobacteriaceae bacterium KBS 83 RepID=UPI00035D0D12
PadR family transcriptional regulator Tax=GWC2_Gemmatimonadetes_71_10_curated
transcriptional regulator, PadR-family
13_1_40cm_4_scaffold_7707_11
RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated, Acidobacteria, Bacteria

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8750..11098
-----------------
DNA (2349bp)
protein (783aa)
Glr1418 protein n=1 Tax=Gloeobacter violaceus (strain PCC 7421) RepID=Q7NKQ9_GLOVI
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated
hypothetical protein
13_1_40cm_4_scaffold_7707_12
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

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11177..13276
-----------------
DNA (2100bp)
protein (700aa)
Aerobic-type carbon monoxide dehydrogenase, large subunit CoxL/CutL-like protein n=1 Tax=Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10) RepID=L0DN80_SINAD id=5224646 bin=16ft_combo_ws3_JS1 species=Singulisphaera acidiphila genus=Singulisphaera taxon_order=Planctomycetales taxon_class=Planctomycetia phylum=Planctomycetes tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
aerobic-type carbon monoxide dehydrogenase, large subunit CoxL/CutL-like protein Tax=RBG_16_RIF_WS3X_71_46_curated
molybdopterin-binding xanthine dehydrogenase
13_1_40cm_4_scaffold_7707_13
CG_Delta_07, Deltaproteobacteria, Proteobacteria, Bacteria

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13472..13801
-----------------
DNA (330bp)
protein (110aa)
hypothetical protein n=1 Tax=Citromicrobium bathyomarinum RepID=UPI0001DD0B7E
Eco57I restriction endonuclease Tax=CG_Delta_07
DNA methylase
13_1_40cm_4_scaffold_7707_14
RIFCSPLOWO2_12_FULL_Betaproteobacteria_65_14_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14031..14774)
-----------------
DNA (744bp)
protein (248aa)
exodeoxyribonuclease III Xth (EC:3.1.11.2); K01142 exodeoxyribonuclease III [EC:3.1.11.2] Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_65_14_curated
Exodeoxyribonuclease III Xth n=1 Tax=Anaeromyxobacter sp. (strain Fw109-5) RepID=A7HHX1_ANADF
exodeoxyribonuclease III Xth
13_1_40cm_4_scaffold_7707_15
Ktedonobacter racemifer, Ktedonobacter, Ktedonobacterales, Ktedonobacteria, Chloroflexi, Bacteria

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comp(14860..16014)
-----------------
DNA (1155bp)
protein (385aa)
Uncharacterized protein n=1 Tax=Ktedonobacter racemifer DSM 44963 RepID=D6TH40_9CHLR
Uncharacterized protein {ECO:0000313|EMBL:EFH90782.1}; Flags: Precursor;; TaxID=485913 species="Bacteria; Chloroflexi; Ktedonobacteria; Ktedonobacterales; Ktedonobacteraceae; Ktedonobacter.;" source="
hypothetical protein
13_1_40cm_4_scaffold_7707_16
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

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16272..17411
-----------------
DNA (1140bp)
protein (380aa)
Putative uncharacterized protein n=1 Tax=delta proteobacterium NaphS2 RepID=D8F9S1_9DELT id=5225741 bin=16ft_combo_ws3_JS1 species=delta proteobacterium NaphS2 genus=unknown taxon_order=unknown taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
putative 3-carboxymuconate cyclase Tax=RBG_16_RIF_WS3X_71_46_curated
putative 3-carboxymuconate cyclase
13_1_40cm_4_scaffold_7707_17
RLO_Deltaproteobacteria_57_22, Deltaproteobacteria, Proteobacteria, Bacteria

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17517..18131
-----------------
DNA (615bp)
protein (205aa)
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_57_22_curated
hypothetical protein id=14426683 bin=bin1_lowGC species=Bacillus sp. WBUNB004 genus=Bacillus taxon_order=Bacillales taxon_class=Bacilli phylum=Firmicutes tax=bin1_lowGC organism_group=Unknown_CP
Electron transfer DM13
13_1_40cm_4_scaffold_7707_18
Burkholderia sp. RPE64, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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18131..18685
-----------------
DNA (555bp)
protein (185aa)
thioredoxin n=1 Tax=Burkholderia sp. WSM4176 RepID=UPI00037100FB
redoxin domain protein
Redoxin domain protein {ECO:0000313|EMBL:BAN27662.1}; TaxID=758793 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia.;" source="Burkholderia sp. RP
13_1_40cm_4_scaffold_7707_19
unknown

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18682..19011
-----------------
DNA (330bp)
protein (110aa)

This feature has no annotations

13_1_40cm_4_scaffold_7707_20
Legionella fallonii, Legionella, Legionellales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(19055..19873)
-----------------
DNA (819bp)
protein (273aa)
ykvO; Uncharacterized oxidoreductase YkvO (EC:1.-.-.-)
Uncharacterized oxidoreductase YkvO {ECO:0000313|EMBL:CEG58304.1}; EC=1.-.-.- {ECO:0000313|EMBL:CEG58304.1};; TaxID=1212491 species="Bacteria; Proteobacteria; Gammaproteobacteria; Legionellales; Legio
Uncharacterized protein n=1 Tax=Legionella pneumophila str. Leg01/11 RepID=U1TFD7_LEGPN
13_1_40cm_4_scaffold_7707_21
Leptospira broomii, Leptospira, Spirochaetia, Spirochaetes, Bacteria

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19974..20354
-----------------
DNA (381bp)
protein (127aa)
DNA-binding helix-turn-helix protein n=1 Tax=Leptospira broomii serovar Hurstbridge str. 5399 RepID=T0GIM0_9LEPT
DNA-binding helix-turn-helix protein {ECO:0000313|EMBL:EQA46669.1}; TaxID=1049789 species="Bacteria; Spirochaetes; Leptospirales; Leptospiraceae; Leptospira.;" source="Leptospira broomii serovar Hurst
ArsR family transcriptional regulator
13_1_40cm_4_scaffold_7707_22
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

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comp(20359..21672)
-----------------
DNA (1314bp)
protein (438aa)
pyridoxal-dependent decarboxylase Tax=RBG_16_RIF_WS3X_71_46_curated
sus:Acid_5969 pyridoxal-dependent decarboxylase id=1244692 bin=RBG9 species=RBG9 genus=RBG9 taxon_order=RBG9 taxon_class=RBG9 phylum=Chloroflexi tax=RBG9 organism_group=Chloroflexi
pyridoxal-dependent decarboxylase
13_1_40cm_4_scaffold_7707_23
Conexibacter woesei, Conexibacter, Solirubrobacterales, Thermoleophilia, Actinobacteria, Bacteria

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comp(23157..23330)
-----------------
DNA (174bp)
protein (58aa)
Two component transcriptional regulator, winged helix family n=1 Tax=Conexibacter woesei (strain DSM 14684 / JCM 11494 / NBRC 100937 / ID131577) RepID=D3FA28_CONWI
two component transcriptional regulator
Two component transcriptional regulator, winged helix family {ECO:0000313|EMBL:ADB53123.1}; TaxID=469383 species="Bacteria; Actinobacteria; Thermoleophilia; Solirubrobacterales; Conexibacteraceae; Con
Displaying 23 items

View Taxonomy