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13_1_40cm_4_scaffold_852

Search features with annotation key words

Displaying 24 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_40cm_4_scaffold_852_1
Sphaerobacter thermophilus, Sphaerobacter, Sphaerobacterales, Sphaerobacteridae, Chloroflexi, Bacteria

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2..1045
DNA (1044bp) protein (348aa)
Uncharacterized protein n=1 Tax=Sphaerobacter thermophilus (strain DSM 20745 / S 6022) RepID=D1C8E8_SPHTD
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACZ40091.1}; Flags: Precursor;; TaxID=479434 species="Bacteria; Chloroflexi; Sphaerobacteridae; Sphaerobacterales; Sphaerobacterineae; Sphaerobacteraceae; Sph
13_1_40cm_4_scaffold_852_2
RLO_RIF_CHLX_71_12, Chloroflexi, Bacteria

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1094..1603
DNA (510bp) protein (170aa)
Rod shape-determining protein MreD n=1 Tax=Caldilinea aerophila (strain DSM 14535 / JCM 11387 / NBRC 104270 / STL-6-O1) RepID=I0I0R7_CALAS
mreD; rod shape-determining protein MreD; K03571 rod shape-determining protein MreD Tax=RIFCSPLOWO2_12_FULL_RIF_CHLX_71_12_curated
mreD; rod shape-determining protein MreD
13_1_40cm_4_scaffold_852_3
unknown

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comp(1513..2541)
DNA (1029bp) protein (343aa)

This feature has no annotations

13_1_40cm_4_scaffold_852_4
unknown

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comp(2571..2756)
DNA (186bp) protein (62aa)

This feature has no annotations

13_1_40cm_4_scaffold_852_5
RLO_RIF_CHLX_71_12, Chloroflexi, Bacteria

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3044..3427
DNA (384bp) protein (128aa)
penicillin-binding protein 2 (EC:2.4.1.129); K05515 penicillin-binding protein 2 Tax=RIFCSPLOWO2_12_FULL_RIF_CHLX_71_12_curated
13_1_40cm_4_scaffold_852_6
RLO_RIF_CHLX_71_12, Chloroflexi, Bacteria

Not on your lists

3498..4622
DNA (1125bp) protein (375aa)
cell elongation-specific peptidoglycan biosynthesis regulator RodA; K05837 rod shape determining protein RodA Tax=RIFCSPLOWO2_12_FULL_RIF_CHLX_71_12_curated
Rod shape-determining protein RodA id=4803677 bin=GWC2_Chloroflexi_73_18 species=Desulfobacca acetoxidans genus=Desulfobacca taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Chloroflexi_73_18 organism_group=Chloroflexi organism_desc=Good +
cell cycle protein
13_1_40cm_4_scaffold_852_trna_1
unknown

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4819..4890
DNA (72bp)
transferRNA
13_1_40cm_4_scaffold_852_7
Sphaerobacter thermophilus, Sphaerobacter, Sphaerobacterales, Sphaerobacteridae, Chloroflexi, Bacteria

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5041..7476
DNA (2436bp) protein (812aa)
Leucine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00049}; EC=6.1.1.4 {ECO:0000256|HAMAP-Rule:MF_00049};; Leucyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00049}; TaxID=479434 species="Bacteria; Chlorof
Leucine--tRNA ligase n=1 Tax=Sphaerobacter thermophilus (strain DSM 20745 / S 6022) RepID=D1C3Q6_SPHTD
leucyl-tRNA synthetase
13_1_40cm_4_scaffold_852_8
GWB1_OP11_38_8, Woesebacteria, Microgenomates, Bacteria

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7473..7880
DNA (408bp) protein (136aa)
Uncharacterized protein Tax=GWB1_OP11_38_8
hypothetical protein id=85390 bin=ACD57 species=ACD57 genus=ACD57 taxon_order=ACD57 taxon_class=ACD57 phylum=OP11 tax=ACD57 organism_group=OP11 (Microgenomates) organism_desc=OP11
13_1_40cm_4_scaffold_852_9
RBG_16_RIF_CHLX_69_14_curated, RIF-CHLX, Bacteria

Not on your lists

7967..8524
DNA (558bp) protein (186aa)
competence protein ComEA n=1 Tax=Curtobacterium ginsengisoli RepID=UPI0003B74AC1
Soluble ligand binding domain protein; K02237 competence protein ComEA Tax=RBG_16_RIF_CHLX_69_14_curated
Soluble ligand binding domain-containing protein
13_1_40cm_4_scaffold_852_10
RBG_16_RIF_CHLX_72_14_curated, RIF-CHLX, Bacteria

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8623..10611
DNA (1989bp) protein (663aa)
DNA internalization-related competence protein ComEC/Rec2 n=1 Tax=Dehalogenimonas lykanthroporepellens (strain ATCC BAA-1523 / JCM 15061 / BL-DC-9) RepID=D8K353_DEHLB
ComE-like competence protein; K02238 competence protein ComEC Tax=RBG_16_RIF_CHLX_72_14_curated
DNA internalization-like competence protein ComEC/Rec2
13_1_40cm_4_scaffold_852_11
R_OD1_46_26, Microgenomates, Bacteria

Not on your lists

10631..11632
DNA (1002bp) protein (334aa)
DNA polymerase III subunit delta; K02340 DNA polymerase III subunit delta [EC:2.7.7.7] Tax=RIFCSPLOWO2_01_FULL_OD1_46_26_curated
DNA polymerase III delta subunit n=1 Tax=Caldilinea aerophila (strain DSM 14535 / JCM 11387 / NBRC 104270 / STL-6-O1) RepID=I0I4I4_CALAS
holA; DNA polymerase III subunit delta
13_1_40cm_4_scaffold_852_12
Fervidobacterium nodosum, Fervidobacterium, Thermotogales, Thermotogae, Thermotogae, Bacteria

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comp(11654..12412)
DNA (759bp) protein (253aa)
putative translaldolase (EC:2.2.1.2)
Probable transaldolase {ECO:0000255|HAMAP-Rule:MF_00494}; EC=2.2.1.2 {ECO:0000255|HAMAP-Rule:MF_00494};; TaxID=381764 species="Bacteria; Thermotogae; Thermotogales; Fervidobacteriaceae; Fervidobacteri
Probable transaldolase n=1 Tax=Thermosipho melanesiensis (strain BI429 / DSM 12029) RepID=TAL_THEM4
13_1_40cm_4_scaffold_852_13
CSP1_4_Chloroflexi, Gitt-GS-136, Chloroflexi, Bacteria

Not on your lists

comp(12409..14061)
DNA (1653bp) protein (551aa)
pyrG; CTP synthetase (EC:6.3.4.2); K01937 CTP synthase [EC:6.3.4.2] id=14628780 bin=bin8_Chloro species=unknown genus=Roseiflexus taxon_order=Chloroflexales taxon_class=Chloroflexi phylum=Chloroflexi tax=bin8_Chloro organism_group=Chloroflexi
pyrG; CTP synthetase (EC:6.3.4.2); K01937 CTP synthase [EC:6.3.4.2] Tax=CSP1_4_Chloroflexi
CTP synthase (EC:6.3.4.2)
13_1_40cm_4_scaffold_852_14
CSP1_4_Chloroflexi, Gitt-GS-136, Chloroflexi, Bacteria

Not on your lists

comp(14094..15218)
DNA (1125bp) protein (375aa)
DNA ligase D; K01971 DNA ligase (ATP) [EC:6.5.1.1] id=14629308 bin=bin8_Chloro species=Pseudonocardia dioxanivorans genus=Pseudonocardia taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=bin8_Chloro organism_group=Chloroflexi
DNA ligase D; K01971 DNA ligase (ATP) [EC:6.5.1.1] Tax=CSP1_4_Chloroflexi
putative DNA ligase
13_1_40cm_4_scaffold_852_15
Microbispora sp. ATCC PTA-5024, Microbispora, Streptosporangiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(15250..16086)
DNA (837bp) protein (279aa)
Non-homologous end joining protein Ku {ECO:0000256|HAMAP-Rule:MF_01875}; TaxID=316330 species="Bacteria; Actinobacteria; Streptosporangiales; Streptosporangiaceae; Microbispora.;" source="Microbispora
Probable DNA repair protein Dred_2003 id=4413391 bin=GWC2_Chloroflexi_73_18 species=Desulfotomaculum reducens genus=Desulfotomaculum taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWC2_Chloroflexi_73_18 organism_group=Chloroflexi organism_desc=Good +
putative DNA repair protein, Ku family
13_1_40cm_4_scaffold_852_16
Verrucosispora maris, Verrucosispora, Micromonosporales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(16172..16594)
DNA (423bp) protein (141aa)
Uncharacterized protein n=1 Tax=Verrucosispora maris (strain AB-18-032) RepID=F4F7H0_VERMA
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEB44409.1}; TaxID=263358 species="Bacteria; Actinobacteria; Micromonosporales; Micromonosporaceae; Verrucosispora.;" source="Verrucosispora maris (strain AB-
13_1_40cm_4_scaffold_852_17
RLO_RIF_CHLX_71_12, Chloroflexi, Bacteria

Not on your lists

comp(16595..18229)
DNA (1635bp) protein (545aa)
Putative lipoprotein n=1 Tax=Streptosporangium roseum (strain ATCC 12428 / DSM 43021 / JCM 3005 / NI 9100) RepID=D2B2Z7_STRRD
lipoprotein Tax=RIFCSPLOWO2_12_FULL_RIF_CHLX_71_12_curated
lipoprotein
13_1_40cm_4_scaffold_852_18
RLO_RIF_CHLX_71_12, Chloroflexi, Bacteria

Not on your lists

18325..20718
DNA (2394bp) protein (798aa)
ATP-dependent DNA ligase; K01971 DNA ligase (ATP) [EC:6.5.1.1] Tax=RIFCSPLOWO2_12_FULL_RIF_CHLX_71_12_curated
ATP-dependent DNA ligase n=1 Tax=Patulibacter medicamentivorans RepID=H0E537_9ACTN
ATP-dependent DNA ligase
13_1_40cm_4_scaffold_852_19
RLO_RIF_CHLX_71_12, Chloroflexi, Bacteria

Not on your lists

20715..21266
DNA (552bp) protein (184aa)
hypothetical protein; K07020 Tax=RIFCSPLOWO2_12_FULL_RIF_CHLX_71_12_curated
Alpha/beta hydrolase superfamily enzyme, predicted hydrolase id=4413390 bin=GWC2_Chloroflexi_73_18 species=Rhodococcus triatomae genus=Rhodococcus taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=GWC2_Chloroflexi_73_18 organism_group=Chloroflexi organism_desc=Good +
alpha/beta hydrolase
13_1_40cm_4_scaffold_852_20
RBG_16_Chloroflexi_63_12_curated, Chloroflexi, Bacteria

Not on your lists

21356..21718
DNA (363bp) protein (121aa)
transmembrane_regions 9..31 Tax=RBG_16_Chloroflexi_63_12_curated
13_1_40cm_4_scaffold_852_21
RBG_16_RIF_CHLX_69_14_curated, RIF-CHLX, Bacteria

Not on your lists

21792..22478
DNA (687bp) protein (229aa)
Two-component system, OmpR family, alkaline phosphatase synthesis response regulator PhoP n=1 Tax=uncultured candidate division OP1 bacterium RepID=H5SQV1_9BACT id=1247317 bin=RBG9 species=uncultured candidate division OP1 bacterium genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=RBG9 organism_group=Chloroflexi
winged helix family two component transcriptional regulator Tax=RBG_16_RIF_CHLX_69_14_curated
winged helix family two component transcriptional regulator
13_1_40cm_4_scaffold_852_22
RBG_19FT_COMBO_Chloroflexi_62_14_curated, Chloroflexi, Bacteria

Not on your lists

22475..23593
DNA (1119bp) protein (373aa)
histidine kinase (EC:2.7.13.3); K02484 two-component system, OmpR family, sensor kinase [EC:2.7.13.3] Tax=RBG_19FT_COMBO_Chloroflexi_62_14_curated
histidine kinase (EC:2.7.13.3); K02484 two-component system, OmpR family, sensor kinase [EC:2.7.13.3] id=1247318 bin=RBG9 species=RBG9 genus=RBG9 taxon_order=RBG9 taxon_class=RBG9 phylum=Chloroflexi tax=RBG9 organism_group=Chloroflexi
histidine kinase (EC:2.7.13.3)
13_1_40cm_4_scaffold_852_23
RLO_RIF_CHLX_71_12, Chloroflexi, Bacteria

Not on your lists

comp(23640..24596)
DNA (957bp) protein (319aa)
aldehyde Dehydrogenase; K00128 aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] Tax=RIFCSPLOWO2_12_FULL_RIF_CHLX_71_12_curated
Aldehyde Dehydrogenase n=1 Tax=Sphaerobacter thermophilus (strain DSM 20745 / S 6022) RepID=D1C1X5_SPHTD
aldehyde Dehydrogenase
Displaying 24 items

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