ggKbase home page

13_2_20cm_2_scaffold_1141

Search features with annotation key words

Displaying 29 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_2_20cm_2_scaffold_1141_1
RBG_13_Bathyarchaeota_46_16b_curated, Bathyarchaeota, Archaea

Not on your lists

comp(791..1801)
DNA (1011bp) protein (337aa)
Putative uncharacterized protein n=1 Tax=Ignicoccus hospitalis (strain KIN4/I / DSM 18386 / JCM 14125) RepID=A8ABP4_IGNH4
hypothetical protein Tax=RBG_13_Bathyarchaeota_46_16b_curated
hypothetical protein
13_2_20cm_2_scaffold_1141_2
RBG_16_Archaea_50_20_curated, Archaea

Not on your lists

1889..2716
DNA (828bp) protein (276aa)
putative circadian clock protein KaiC (EC:2.7.11.1)
Hypothetical conserved protein n=1 Tax=uncultured crenarchaeote RepID=H5SJ42_9CREN
hypothetical protein Tax=RBG_16_Archaea_50_20_curated
13_2_20cm_2_scaffold_1141_3
RBG_16_Archaea_50_20_curated, Archaea

Not on your lists

comp(2713..3786)
DNA (1074bp) protein (358aa)
Universally conserved protein n=1 Tax=Hyperthermus butylicus (strain DSM 5456 / JCM 9403) RepID=A2BKD6_HYPBU
hypothetical protein Tax=RBG_16_Archaea_50_20_curated
hypothetical protein
13_2_20cm_2_scaffold_1141_4
RBG_16_Bathyarchaeota_48_13_curated, Bathyarchaeota, Archaea

Not on your lists

comp(3798..4538)
DNA (741bp) protein (247aa)
Hypothetical conserved protein n=1 Tax=uncultured crenarchaeote RepID=H5SJ42_9CREN
circadian clock protein KaiC Tax=RBG_16_Bathyarchaeota_48_13_curated
hypothetical protein
13_2_20cm_2_scaffold_1141_5

Not on your lists

4878..5687
DNA (810bp) protein (270aa)
isopentenyl phosphate kinase (EC:2.7.4.26)
Isopentenyl phosphate kinase n=1 Tax=Methanosaeta thermophila (strain DSM 6194 / PT) RepID=A0B6E2_METTP
Marine sediment metagenome DNA, contig: S06H3_C02602 {ECO:0000313|EMBL:GAH94013.1}; Flags: Fragment;; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marin
13_2_20cm_2_scaffold_1141_6
RBG_13_Bathyarchaeota_38_9_curated, Bathyarchaeota, Archaea

Not on your lists

comp(5681..6691)
DNA (1011bp) protein (337aa)
hypothetical protein Tax=RBG_13_Bathyarchaeota_38_9_curated
Geranyltranstransferase id=3544216 bin=GWA1_ZB2_49_26 species=Thermofilum pendens genus=Thermofilum taxon_order=Thermoproteales taxon_class=Thermoprotei phylum=Crenarchaeota tax=GWA1_ZB2_49_26 organism_group=ZB2 organism_desc=Good
hypothetical protein
13_2_20cm_2_scaffold_1141_7
RBG_16_Archaea_50_20_curated, Archaea

Not on your lists

comp(6806..7261)
DNA (456bp) protein (152aa)
50S ribosomal protein L15e n=1 Tax=Desulfurococcus kamchatkensis (strain 1221n / DSM 18924) RepID=RL15E_DESK1
50S ribosomal protein L15e; K02877 large subunit ribosomal protein L15e Tax=RBG_16_Archaea_50_20_curated
LSU ribosomal protein L15E
13_2_20cm_2_scaffold_1141_8
RBG_16_Archaea_50_20_curated, Archaea

Not on your lists

7357..8712
DNA (1356bp) protein (452aa)
NADP-dependent malic enzyme n=1 Tax=Candidatus Methanomassiliicoccus intestinalis Issoire-Mx1 RepID=R9T8J1_9EURY
NADP-dependent malic enzyme Tax=RBG_16_Archaea_50_20_curated
NADP-dependent malic enzyme
13_2_20cm_2_scaffold_1141_9
RBG_16_Archaea_50_20_curated, Archaea

Not on your lists

8943..9281
DNA (339bp) protein (113aa)
reduced coenzyme f420:nadp oxidoreductase (EC:1.6.99.-)
Reduced coenzyme F420:NADP oxidoreductase n=1 Tax=Methanothermus fervidus (strain ATCC 43054 / DSM 2088 / JCM 10308 / V24 S) RepID=E3GWR0_METFV
dinucleotide-binding protein; K06988 Tax=RBG_16_Archaea_50_20_curated
13_2_20cm_2_scaffold_1141_10
RBG_16_Archaea_50_20_curated, Archaea

Not on your lists

9289..10500
DNA (1212bp) protein (404aa)
Translation-associated GTPase n=1 Tax=Methanothermobacter thermautotrophicus CaT2 RepID=T2GJ85_METTF rbh
GTP binding protein Tax=RBG_16_Archaea_50_20_curated
ychF; translation-associated GTPase
13_2_20cm_2_scaffold_1141_11
Burkholderia xenovorans, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11192..11500
DNA (309bp) protein (103aa)
Putative lyase n=1 Tax=Burkholderia xenovorans (strain LB400) RepID=Q13RD6_BURXL
glyoxalase/Bleomycin resistance/Dioxygenase superfamily protein
Putative lyase {ECO:0000313|EMBL:ABE33353.1}; TaxID=266265 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia.;" source="Burkholderia xenovorans (st
13_2_20cm_2_scaffold_1141_12
unknown

Not on your lists

comp(11690..11974)
DNA (285bp) protein (95aa)

This feature has no annotations

13_2_20cm_2_scaffold_1141_13
RBG_16_Archaea_50_20_curated, Archaea

Not on your lists

comp(12157..13278)
DNA (1122bp) protein (374aa)
glucose-1-phosphate thymidylyltransferase; K04042 bifunctional UDP-N-acetylglucosamine pyrophosphorylase / Glucosamine-1-phosphate N-acetyltransferase [EC:2.7.7.23 2.3.1.157] Tax=RBG_16_Archaea_50_20_
Predicted nucleoside-diphosphate-sugar pyrophosphorylase n=1 Tax=Methanosphaera stadtmanae (strain ATCC 43021 / DSM 3091 / JCM 11832 / MCB-3) RepID=Q2NES5_METST
nucleoside-diphosphate-sugar pyrophosphorylase
13_2_20cm_2_scaffold_1141_14
RBG_16_Bathyarchaeota_48_13_curated, Bathyarchaeota, Archaea

Not on your lists

comp(13402..14472)
DNA (1071bp) protein (357aa)
phosphoglucosamine mutase (EC:5.4.2.10); K03431 phosphoglucosamine mutase [EC:5.4.2.10] Tax=RBG_16_Bathyarchaeota_48_13_curated
Phosphoglucosamine mutase n=1 Tax=Methanococcus maripaludis (strain S2 / LL) RepID=GLMM_METMP
phosphohexomutase
13_2_20cm_2_scaffold_1141_15
RBG_16_Archaea_50_20_curated, Archaea

Not on your lists


comp(14752..15414)
DNA (663bp) protein (221aa)
30S ribosomal protein S3Ae n=1 Tax=Desulfurococcus kamchatkensis (strain 1221n / DSM 18924) RepID=RS3A_DESK1
30S ribosomal protein S3Ae; K02984 small subunit ribosomal protein S3Ae Tax=RBG_16_Archaea_50_20_curated
30S ribosomal protein S3Ae
13_2_20cm_2_scaffold_1141_16
unknown

Not on your lists

comp(15420..15674)
DNA (255bp) protein (85aa)

This feature has no annotations

13_2_20cm_2_scaffold_1141_17
RBG_13_Bathyarchaeota_38_9_curated, Bathyarchaeota, Archaea

Not on your lists

comp(15671..17116)
DNA (1446bp) protein (482aa)
Archaea-specific RecJ-like exonuclease n=1 Tax=Candidatus Caldiarchaeum subterraneum RepID=E6N5C1_9ARCH
phosphoesterase RecJ domain protein; K07463 archaea-specific RecJ-like exonuclease Tax=RBG_13_Bathyarchaeota_38_9_curated
archaea-specific RecJ-like exonuclease
13_2_20cm_2_scaffold_1141_18
unknown

Not on your lists

17244..17504
DNA (261bp) protein (87aa)

This feature has no annotations

13_2_20cm_2_scaffold_1141_19
unknown

Not on your lists

comp(17609..17941)
DNA (333bp) protein (111aa)

This feature has no annotations

13_2_20cm_2_scaffold_1141_20
RBG_16_Archaea_50_20_curated, Archaea

Not on your lists


comp(18479..19420)
DNA (942bp) protein (314aa)
Translation initiation factor 2 subunit gamma n=2 Tax=Methanocaldococcus jannaschii RepID=IF2G_METJA
translation initiation factor IF-2; K03242 translation initiation factor 2 subunit 3 Tax=RBG_16_Archaea_50_20_curated
translation initiation factor IF-2
13_2_20cm_2_scaffold_1141_21
RBG_13_Bathyarchaeota_38_9_curated, Bathyarchaeota, Archaea

Not on your lists


19796..20464
DNA (669bp) protein (223aa)
tRNA N6-adenosine threonylcarbamoyltransferase n=1 Tax=Caldivirga maquilingensis (strain ATCC 700844 / DSM 13496 / JCM 10307 / IC-167) RepID=KAE1_CALMQ
metalloendopeptidase glycoprotease family Tax=RBG_13_Bathyarchaeota_38_9_curated
metallohydrolase, glycoprotease/Kae1 family
13_2_20cm_2_scaffold_1141_22
Acidianus hospitalis, Acidianus, Sulfolobales, Thermoprotei, Crenarchaeota, Archaea

Not on your lists

20470..20670
DNA (201bp) protein (67aa)
tRNA N6-adenosine threonylcarbamoyltransferase n=1 Tax=Acidianus hospitalis (strain W1) RepID=F4B7H7_ACIHW
Suspect SCG annotation. See neighboring gene [13_2_20cm_2_scaffold_1141_21].
O-sialoglycoprotein endopeptidase domain-containing protein
O-sialoglycoprotein endopeptidase N-terminal subunit {ECO:0000313|EMBL:AEE93582.1}; TaxID=933801 species="Archaea; Crenarchaeota; Thermoprotei; Sulfolobales; Sulfolobaceae; Acidianus.;" source="Acidia
13_2_20cm_2_scaffold_1141_23
RBG_16_Bathyarchaeota_57_9_curated, Bathyarchaeota, Archaea

Not on your lists

20652..21308
DNA (657bp) protein (219aa)
o-sialoglycoprotein endopeptidase; K07174 Mn2+-dependent serine/threonine protein kinase [EC:2.7.1.-] Tax=RBG_16_Bathyarchaeota_57_9_curated
O-sialoglycoprotein endopeptidase n=2 Tax=Pyrococcus furiosus RepID=Q8U3J3_PYRFU
o-sialoglycoprotein endopeptidase
13_2_20cm_2_scaffold_1141_24
Caldivirga maquilingensis, Caldivirga, Thermoproteales, Thermoprotei, Crenarchaeota, Archaea

Not on your lists


21295..21906
DNA (612bp) protein (204aa)
Non-canonical purine NTP pyrophosphatase, rdgB/HAM1 family n=1 Tax=Caldivirga maquilingensis (strain ATCC 700844 / DSM 13496 / JCM 10307 / IC-167) RepID=A8MC06_CALMQ
RdgB/HAM1 family non-canonical purine NTP pyrophosphatase
Non-canonical purine NTP pyrophosphatase, rdgB/HAM1 family {ECO:0000313|EMBL:ABW02790.1}; TaxID=397948 species="Archaea; Crenarchaeota; Thermoprotei; Thermoproteales; Thermoproteaceae; Caldivirga.;" s
13_2_20cm_2_scaffold_1141_25
RBG_16_Archaea_50_20_curated, Archaea

Not on your lists


21928..22533
DNA (606bp) protein (202aa)
rpoE`; DNA-directed RNA polymerase, subunit E` (EC:2.7.7.6) Tax=RBG_16_Archaea_50_20_curated
rpoE'; DNA-directed RNA polymerase, subunit E` (EC:2.7.7.6)
DNA-directed RNA polymerase subunit E n=1 Tax=Thaumarchaeota archaeon SCGC AB-539-E09 RepID=M7T895_9ARCH
13_2_20cm_2_scaffold_1141_26
RBG_13_Bathyarchaeota_38_9_curated, Bathyarchaeota, Archaea

Not on your lists


22990..23379
DNA (390bp) protein (130aa)
50S ribosomal protein L7Ae n=1 Tax=Hyperthermus butylicus (strain DSM 5456 / JCM 9403) RepID=RL7A_HYPBU
50S ribosomal protein L7Ae; K02936 large subunit ribosomal protein L7Ae Tax=RBG_13_Bathyarchaeota_38_9_curated
50S ribosomal protein L7Ae
13_2_20cm_2_scaffold_1141_27
RBG_13_Bathyarchaeota_38_9_curated, Bathyarchaeota, Archaea

Not on your lists


23376..23600
DNA (225bp) protein (75aa)
30S ribosomal protein S28e n=2 Tax=Candidatus Nitrososphaera gargensis RepID=K0IIL4_NITGG
30S ribosomal protein S28e; K02979 small subunit ribosomal protein S28e Tax=RBG_13_Bathyarchaeota_38_9_curated
rps28e; 30S ribosomal protein S28e
13_2_20cm_2_scaffold_1141_28
RBG_16_Bathyarchaeota_48_13_curated, Bathyarchaeota, Archaea

Not on your lists

23769..24224
DNA (456bp) protein (152aa)
ndk; nucleoside diphosphate kinase; K00940 nucleoside-diphosphate kinase [EC:2.7.4.6] Tax=RBG_16_Bathyarchaeota_48_13_curated
ndk; mulitfunctional nucleoside diphosphate kinase/apyrimidinic endonuclease/3'-phosphodiesterase (EC:2.7.4.6)
Nucleoside diphosphate kinase n=3 Tax=Sulfolobus acidocaldarius RepID=NDK_SULAC
13_2_20cm_2_scaffold_1141_29
RBG_13_Bathyarchaeota_38_9_curated, Bathyarchaeota, Archaea

Not on your lists

24290..24874
DNA (585bp) protein (195aa)
Probable translation initiation factor IF-2 n=1 Tax=Sulfolobus tokodaii (strain DSM 16993 / JCM 10545 / NBRC 100140 / 7) RepID=IF2P_SULTO
translation initiation factor IF-2; K03243 translation initiation factor 5B Tax=RBG_13_Bathyarchaeota_38_9_curated
translation initiation factor IF-2
Displaying 29 items

View Taxonomy