ggKbase home page

13_2_20cm_2_scaffold_154

Search features with annotation key words

Displaying 26 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_2_20cm_2_scaffold_154_1
CG_Arma_01, Armatimonadetes, Bacteria

Not on your lists

2..166
DNA (165bp) protein (55aa)
Succinyl-CoA ligase [ADP-forming] alpha chain (EC:6.2.1.5)
succinyl-CoA synthetase subunit alpha (EC:6.2.1.5); K01902 succinyl-CoA synthetase alpha subunit [EC:6.2.1.5] Tax=CG_Arma_01
Succinyl-CoA ligase [ADP-forming] alpha chain n=1 Tax=Spirochaeta sp. L21-RPul-D2 RepID=V5WK78_9SPIO
13_2_20cm_2_scaffold_154_2
RBG_16_Archaea_50_20_curated, Archaea

Not on your lists


comp(375..1223)
DNA (849bp) protein (283aa)
putative ribosomal RNA small subunit methyltransferase A; K02528 16S rRNA (adenine1518-N6/adenine1519-N6)-dimethyltransferase [EC:2.1.1.182] Tax=RBG_16_Archaea_50_20_curated
dimethyladenosine transferase (EC:2.1.1.48)
Probable ribosomal RNA small subunit methyltransferase A n=1 Tax=Methanosaeta thermophila (strain DSM 6194 / PT) RepID=A0B7V7_METTP
13_2_20cm_2_scaffold_154_3
RBG_16_Archaea_50_20_curated, Archaea

Not on your lists

comp(1228..1812)
DNA (585bp) protein (195aa)
Uncharacterized protein n=1 Tax=Ferroglobus placidus (strain DSM 10642 / AEDII12DO) RepID=D3S1Z8_FERPA
DNA-binding protein; K07572 putative nucleotide binding protein Tax=RBG_16_Archaea_50_20_curated
hypothetical protein
13_2_20cm_2_scaffold_154_4
RBG_16_Archaea_50_20_curated, Archaea

Not on your lists

comp(1957..2286)
DNA (330bp) protein (110aa)
RNA polymerase Rpb4; K03051 DNA-directed RNA polymerase subunit F [EC:2.7.7.6] Tax=RBG_16_Archaea_50_20_curated
DNA-directed RNA polymerase, subunit F (EC:2.7.7.6)
Putative RNA polymerase Rpb4 n=1 Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0IJP5_NITGG
13_2_20cm_2_scaffold_154_5
RBG_16_Archaea_50_20_curated, Archaea

Not on your lists


comp(2286..2585)
DNA (300bp) protein (100aa)
50S ribosomal protein L21e n=2 Tax=Sulfolobus solfataricus RepID=RL21_SULSO
50S ribosomal protein L21; K02889 large subunit ribosomal protein L21e Tax=RBG_16_Archaea_50_20_curated
rpl21E; 50S ribosomal protein L21
13_2_20cm_2_scaffold_154_6
RBG_13_Bathyarchaeota_46_16b_curated, Bathyarchaeota, Archaea

Not on your lists

2689..3702
DNA (1014bp) protein (338aa)
methyltransferase-like protein; K07446 tRNA (guanine10-N2)-dimethyltransferase [EC:2.1.1.213] Tax=RBG_13_Bathyarchaeota_46_16b_curated
tRNA (guanine(10)-N2)-dimethyltransferase n=1 Tax=Methanothermobacter thermautotrophicus (strain ATCC 29096 / DSM 1053 / JCM 10044 / NBRC 100330 / Delta H) RepID=TMG10_METTH
methyltransferase-like protein
13_2_20cm_2_scaffold_154_7
RBG_13_Bathyarchaeota_46_16b_curated, Bathyarchaeota, Archaea

Not on your lists

3702..4622
DNA (921bp) protein (307aa)
Ribonuclease Z (EC:3.1.26.11)
Ribonuclease Z n=1 Tax=Methanosarcina barkeri (strain Fusaro / DSM 804) RepID=Q46BL2_METBF
ribonuclease Z Tax=RBG_13_Bathyarchaeota_46_16b_curated
13_2_20cm_2_scaffold_154_8
Rhodothermus marinus, Rhodothermus, Bacteroidetes Order II. Incertae sedis, Bacteroidetes, Bacteria

Not on your lists

comp(4659..5198)
DNA (540bp) protein (180aa)
pyridoxine/pyridoxamine 5'-phosphate oxidase (EC:1.4.3.5)
Pyridoxine/pyridoxamine 5'-phosphate oxidase {ECO:0000256|HAMAP-Rule:MF_01629}; EC=1.4.3.5 {ECO:0000256|HAMAP-Rule:MF_01629};; PNP/PMP oxidase {ECO:0000256|HAMAP-Rule:MF_01629}; Pyridoxal 5'-phosphate
Pyridoxine/pyridoxamine 5'-phosphate oxidase n=1 Tax=Rhodothermus marinus SG0.5JP17-172 RepID=G2SEC4_RHOMR
13_2_20cm_2_scaffold_154_9
RBG_13_Bathyarchaeota_46_16b_curated, Bathyarchaeota, Archaea

Not on your lists

comp(5273..5506)
DNA (234bp) protein (78aa)
hypothetical protein n=1 Tax=Sulfolobales archaeon Acd1 RepID=UPI000362FC74
hypothetical protein; K09736 hypothetical protein Tax=RBG_13_Bathyarchaeota_46_16b_curated
hypothetical protein
13_2_20cm_2_scaffold_154_10
RBG_16_Bathyarchaeota_48_13_curated, Bathyarchaeota, Archaea

Not on your lists

comp(5674..6216)
DNA (543bp) protein (181aa)
Dephospho-CoA kinase, CoaE n=1 Tax=Candidatus Nitrosoarchaeum koreensis MY1 RepID=F9CUJ5_9ARCH
hypothetical protein Tax=RBG_16_Bathyarchaeota_48_13_curated
hypothetical protein
13_2_20cm_2_scaffold_154_11
Dictyoglomus thermophilum, Dictyoglomus, Dictyoglomales, Dictyoglomia, Dictyoglomi, Bacteria

Not on your lists

6640..7602
DNA (963bp) protein (321aa)
Cell surface protein n=1 Tax=Dictyoglomus thermophilum (strain ATCC 35947 / DSM 3960 / H-6-12) RepID=B5YBJ6_DICT6
cell surface protein
Cell surface protein {ECO:0000313|EMBL:ACI18516.1}; TaxID=309799 species="Bacteria; Dictyoglomi; Dictyoglomales; Dictyoglomaceae; Dictyoglomus.;" source="Dictyoglomus thermophilum (strain ATCC 35947 /
13_2_20cm_2_scaffold_154_12
RBG_13_Bathyarchaeota_38_9_curated, Bathyarchaeota, Archaea

Not on your lists

7814..8404
DNA (591bp) protein (197aa)
LigT; 2'-5' RNA ligase; K01975 2'-5' RNA ligase [EC:6.5.1.-] Tax=RBG_13_Bathyarchaeota_38_9_curated
2'-5' RNA ligase n=1 Tax=Methanopyrus kandleri (strain AV19 / DSM 6324 / JCM 9639 / NBRC 100938) RepID=Q8TVM2_METKA
LigT; 2'-5' RNA ligase
13_2_20cm_2_scaffold_154_13
RBG_13_Bathyarchaeota_38_9_curated, Bathyarchaeota, Archaea

Not on your lists


8480..9880
DNA (1401bp) protein (467aa)
tRNA adenylyltransferase (EC:2.7.7.72); K07558 tRNA nucleotidyltransferase (CCA-adding enzyme) [EC:2.7.7.72] Tax=RBG_13_Bathyarchaeota_38_9_curated
CCA-adding enzyme n=1 Tax=Methanoplanus petrolearius (strain DSM 11571 / OCM 486 / SEBR 4847) RepID=E1RDQ9_METP4
CCA-adding enzyme
13_2_20cm_2_scaffold_154_14
CSP1_1_Thaumarchaeota, Nitrosopumilales, Thaumarchaeota, Archaea

Not on your lists

9856..10629
DNA (774bp) protein (258aa)
Ser/Thr protein kinase id=14428117 bin=bin2_Thaum species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Thaumarchaeota tax=bin2_Thaum organism_group=Archaeon
Ser/Thr protein kinase Tax=CSP1_1_Thaumarchaeota
Ser/Thr protein kinase
13_2_20cm_2_scaffold_154_15
uncultured Candidatus Nitrosocaldus sp., Candidatus Nitrosocaldus, Crenarchaeota, Archaea

Not on your lists

comp(10632..11498)
DNA (867bp) protein (289aa)
ABC transporter permease protein n=1 Tax=uncultured Candidatus Nitrosocaldus sp. RepID=Q1ER87_9CREN
ABC transporter permease protein {ECO:0000313|EMBL:BAE95239.1}; TaxID=766501 species="Archaea; Crenarchaeota; Candidatus Nitrosocaldus; environmental samples.;" source="uncultured Candidatus Nitrosoca
ABC transporter permease
13_2_20cm_2_scaffold_154_16
RBG_13_Bathyarchaeota_46_16b_curated, Bathyarchaeota, Archaea

Not on your lists

comp(11489..12328)
DNA (840bp) protein (280aa)
ABC transporter n=1 Tax=Candidatus Caldiarchaeum subterraneum RepID=Q4LED5_9ARCH
ABC transporter permease; K09686 antibiotic transport system permease protein Tax=RBG_13_Bathyarchaeota_46_16b_curated
ABC-2 type transport system protein
13_2_20cm_2_scaffold_154_17
RBG_13_Bathyarchaeota_46_16b_curated, Bathyarchaeota, Archaea

Not on your lists

comp(12325..13302)
DNA (978bp) protein (326aa)
Antibiotic transport system ATP-binding protein n=1 Tax=uncultured candidate division OP1 bacterium RepID=H5SQX0_9BACT
ABC transporter-like protein; K09687 antibiotic transport system ATP-binding protein Tax=RBG_13_Bathyarchaeota_46_16b_curated
ABC transporter ATP-binding protein
13_2_20cm_2_scaffold_154_18
RBG_13_Bathyarchaeota_46_16b_curated, Bathyarchaeota, Archaea

Not on your lists

comp(13383..16244)
DNA (2862bp) protein (954aa)
DEAD/DEAH box helicase; K03724 ATP-dependent helicase Lhr and Lhr-like helicase [EC:3.6.4.-] Tax=RBG_13_Bathyarchaeota_46_16b_curated
ATP-dependent helicase n=1 Tax=uncultured archaeon RepID=Q6MZB0_9ARCH
DEAD/DEAH box helicase
13_2_20cm_2_scaffold_154_19
RBG_13_Bathyarchaeota_38_9_curated, Bathyarchaeota, Archaea

Not on your lists

16415..16774
DNA (360bp) protein (120aa)
Transcriptional regulator, PadR family n=2 Tax=Clostridiales RepID=B0NE98_CLOSV
PadR family transcriptional regulator Tax=RBG_13_Bathyarchaeota_38_9_curated
PadR-like family transcriptional regulator
13_2_20cm_2_scaffold_154_20
unknown

Not on your lists

16790..17557
DNA (768bp) protein (256aa)

This feature has no annotations

13_2_20cm_2_scaffold_154_21
RBG_13_Bathyarchaeota_38_9_curated, Bathyarchaeota, Archaea

Not on your lists

17676..18371
DNA (696bp) protein (232aa)
TATA-box-binding protein n=1 Tax=uncultured marine crenarchaeote E48-1C RepID=G9BAV1_9CREN
tbp; TATA-box-binding protein Tax=RBG_13_Bathyarchaeota_38_9_curated
tbp; TATA-box-binding protein
13_2_20cm_2_scaffold_154_22
Vulcanisaeta distributa, Vulcanisaeta, Thermoproteales, Thermoprotei, Crenarchaeota, Archaea

Not on your lists

18389..18922
DNA (534bp) protein (178aa)
Uncharacterized protein n=1 Tax=Vulcanisaeta distributa (strain DSM 14429 / JCM 11212 / NBRC 100878 / IC-017) RepID=E1QSB6_VULDI
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADN49509.1}; TaxID=572478 species="Archaea; Crenarchaeota; Thermoprotei; Thermoproteales; Thermoproteaceae; Vulcanisaeta.;" source="Vulcanisaeta distributa (s
13_2_20cm_2_scaffold_154_23
Candidatus Acidianus copahuensis, Acidianus, Sulfolobales, Thermoprotei, Crenarchaeota, Archaea

Not on your lists

comp(18881..19087)
DNA (207bp) protein (69aa)
ATPase {ECO:0000313|EMBL:EZQ10226.1}; TaxID=1160895 species="Archaea; Crenarchaeota; Thermoprotei; Sulfolobales; Sulfolobaceae; Acidianus.;" source="Candidatus Acidianus copahuensis.;"
13_2_20cm_2_scaffold_154_24
RBG_16_Archaea_50_20_curated, Archaea

Not on your lists

comp(19839..20237)
DNA (399bp) protein (133aa)
PilT domain-containing protein Tax=RBG_16_Archaea_50_20_curated
13_2_20cm_2_scaffold_154_25
Candidatus Kuenenia stuttgartiensis, Candidatus Kuenenia, Candidatus Brocadiales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

comp(20617..22749)
DNA (2133bp) protein (711aa)
Uncharacterized protein n=1 Tax=Candidatus Kuenenia stuttgartiensis RepID=Q1Q573_9BACT
Uncharacterized protein {ECO:0000313|EMBL:CAJ75169.1}; TaxID=174633 species="Bacteria; Planctomycetes; Planctomycetia; Candidatus Brocadiales; Candidatus Brocadiaceae; Candidatus Kuenenia.;" source="C
TonB-dependent receptor
13_2_20cm_2_scaffold_154_26
unknown

Not on your lists

comp(23158..23403)
DNA (246bp) protein (82aa)

This feature has no annotations

Displaying 26 items

View Taxonomy