ggKbase home page

13_2_20cm_2_scaffold_2023

Search features with annotation key words

Displaying items 1-30 of 35 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_2_20cm_2_scaffold_2023_1
RBG_19FT_COMBO_Euryarchaeota_69_17_curated, Euryarchaeota, Archaea

Not on your lists


comp(3..449)
DNA (447bp) protein (149aa)
30S ribosomal protein S5 n=2 Tax=Euryarchaeota RepID=M9SL02_9EURY
rps5p; 30S ribosomal protein S5P Tax=RBG_19FT_COMBO_Euryarchaeota_69_17_curated
SSU ribosomal protein S2e (S5p)
13_2_20cm_2_scaffold_2023_2

Not on your lists


comp(449..949)
DNA (501bp) protein (167aa)
50S ribosomal protein L18 n=1 Tax=Methanomassiliicoccus luminyensis RepID=UPI00036D4605
50S ribosomal protein L18 {ECO:0000256|HAMAP-Rule:MF_01337, ECO:0000256|SAAS:SAAS00243986}; TaxID=115547 species="Archaea; environmental samples.;" source="uncultured archaeon.;"
rpl18p; 50S ribosomal protein L18P
13_2_20cm_2_scaffold_2023_3
RBG_16_Euryarchaeota_68_13_curated, Euryarchaeota, Archaea

Not on your lists

comp(946..1413)
DNA (468bp) protein (156aa)
50S ribosomal protein L19e n=1 Tax=Archaeoglobus sulfaticallidus PM70-1 RepID=N0BI70_9EURY
LSU ribosomal protein L19E Tax=RBG_16_Euryarchaeota_68_13_curated
LSU ribosomal protein L19E
13_2_20cm_2_scaffold_2023_4
RBG_19FT_COMBO_Euryarchaeota_69_17_curated, Euryarchaeota, Archaea

Not on your lists

comp(1410..2189)
DNA (780bp) protein (260aa)
hypothetical protein n=1 Tax=Methanomassiliicoccus luminyensis RepID=UPI000377A3F2
ribosomal protein L32E Tax=RBG_19FT_COMBO_Euryarchaeota_69_17_curated
ribosomal protein L32E
13_2_20cm_2_scaffold_2023_5

Not on your lists


comp(2191..2736)
DNA (546bp) protein (182aa)
50S ribosomal protein L6 n=1 Tax=Methanomassiliicoccus luminyensis RepID=UPI000372DEA1
50S ribosomal protein L6 {ECO:0000256|HAMAP-Rule:MF_01365}; TaxID=115547 species="Archaea; environmental samples.;" source="uncultured archaeon.;"
50S ribosomal protein L6
13_2_20cm_2_scaffold_2023_6
RBG_19FT_COMBO_Euryarchaeota_69_17_curated, Euryarchaeota, Archaea

Not on your lists


comp(2745..3134)
DNA (390bp) protein (130aa)
30S ribosomal protein S8 n=1 Tax=Methanomassiliicoccus luminyensis RepID=UPI00036D309E
rps8p; 30S ribosomal protein S8P Tax=RBG_19FT_COMBO_Euryarchaeota_69_17_curated
rps8p; 30S ribosomal protein S8P
13_2_20cm_2_scaffold_2023_7
RBG_16_Euryarchaeota_67_27_curated, Euryarchaeota, Archaea

Not on your lists


comp(3144..3701)
DNA (558bp) protein (186aa)
50S ribosomal protein L5 n=2 Tax=Euryarchaeota RepID=M9SEL6_9EURY
rpl5p; 50S ribosomal protein L5P Tax=RBG_16_Euryarchaeota_67_27_curated
LSU ribosomal protein L11e (L5p)
13_2_20cm_2_scaffold_2023_8
RBG_19FT_COMBO_Euryarchaeota_69_17_curated, Euryarchaeota, Archaea

Not on your lists

comp(3710..4420)
DNA (711bp) protein (237aa)
hypothetical protein n=1 Tax=Methanomassiliicoccus luminyensis RepID=UPI0003630352
ribosomal protein S4E, central domain protein; K02987 small subunit ribosomal protein S4e Tax=RBG_19FT_COMBO_Euryarchaeota_69_17_curated
ribosomal protein S4E, central domain protein
13_2_20cm_2_scaffold_2023_9

Not on your lists


comp(4417..4785)
DNA (369bp) protein (123aa)
50S ribosomal protein L24 n=1 Tax=Aeropyrum camini SY1 = JCM 12091 RepID=U3TCH2_9CREN
50S ribosomal protein L24P {ECO:0000256|HAMAP-Rule:MF_01326}; TaxID=115547 species="Archaea; environmental samples.;" source="uncultured archaeon.;"
rpl24p; 50S ribosomal protein L24
13_2_20cm_2_scaffold_2023_10
RBG_16_Euryarchaeota_67_27_curated, Euryarchaeota, Archaea

Not on your lists


comp(4794..5192)
DNA (399bp) protein (133aa)
50S ribosomal protein L14 n=1 Tax=Aciduliprofundum sp. (strain MAR08-339) RepID=L0HJQ3_ACIS0
50S ribosomal protein L14P Tax=RBG_16_Euryarchaeota_67_27_curated
50S ribosomal protein L14P
13_2_20cm_2_scaffold_2023_11
RBG_19FT_COMBO_Euryarchaeota_69_17_curated, Euryarchaeota, Archaea

Not on your lists


comp(5189..5578)
DNA (390bp) protein (130aa)
30S ribosomal protein S17P n=1 Tax=Aciduliprofundum boonei (strain DSM 19572 / T469) RepID=D3TB39_ACIB4
archaeal ribosomal protein S17P Tax=RBG_19FT_COMBO_Euryarchaeota_69_17_curated
30S ribosomal protein S17
13_2_20cm_2_scaffold_2023_12
RBG_16_Euryarchaeota_68_12_curated, Euryarchaeota, Archaea

Not on your lists

comp(5584..5835)
DNA (252bp) protein (84aa)
ribonuclease P protein component 1; K03538 ribonuclease P protein subunit POP4 [EC:3.1.26.5] Tax=RBG_16_Euryarchaeota_68_12_curated
rpp29; ribonuclease P subunit P29 (EC:3.1.26.5)
Ribonuclease P protein component 1 n=1 Tax=Methanobacterium sp. (strain SWAN-1) RepID=F6D7K9_METSW
13_2_20cm_2_scaffold_2023_13
RBG_16_Euryarchaeota_67_27_curated, Euryarchaeota, Archaea

Not on your lists


comp(5832..6086)
DNA (255bp) protein (85aa)
hypothetical protein n=1 Tax=Methanomassiliicoccus luminyensis RepID=UPI000378FEBB
50S ribosomal protein L29P Tax=RBG_16_Euryarchaeota_67_27_curated
50S ribosomal protein L29P
13_2_20cm_2_scaffold_2023_14
RBG_19FT_COMBO_Euryarchaeota_69_17_curated, Euryarchaeota, Archaea

Not on your lists


comp(6086..6967)
DNA (882bp) protein (294aa)
30S ribosomal protein S3 n=1 Tax=Candidatus Methanomassiliicoccus intestinalis Issoire-Mx1 RepID=R9T5I7_9EURY rbh
rps3p; 30S ribosomal protein S3P Tax=RBG_19FT_COMBO_Euryarchaeota_69_17_curated
rps3p; 30S ribosomal protein S3P
13_2_20cm_2_scaffold_2023_15
RBG_16_Euryarchaeota_67_27_curated, Euryarchaeota, Archaea

Not on your lists


comp(6968..7423)
DNA (456bp) protein (152aa)
50S ribosomal protein L22 n=1 Tax=Methanomassiliicoccus luminyensis RepID=UPI000366A406
ribosomal protein L22(archaeal)/L17(eukaryotic/archaeal) Tax=RBG_16_Euryarchaeota_67_27_curated
ribosomal protein L22(archaeal)/L17(eukaryotic/archaeal)
13_2_20cm_2_scaffold_2023_16

Not on your lists


comp(7431..7895)
DNA (465bp) protein (155aa)
hypothetical protein n=1 Tax=Methanomassiliicoccus luminyensis RepID=UPI00037DD1D8
30S ribosomal protein S19P {ECO:0000256|HAMAP-Rule:MF_00531}; TaxID=115547 species="Archaea; environmental samples.;" source="uncultured archaeon.;"
30S ribosomal protein S19
13_2_20cm_2_scaffold_2023_17
RBG_16_Euryarchaeota_67_27_curated, Euryarchaeota, Archaea

Not on your lists

comp(7900..8613)
DNA (714bp) protein (238aa)
hypothetical protein n=1 Tax=Methanomassiliicoccus luminyensis RepID=UPI000381615B
ribosomal protein L2; K02886 large subunit ribosomal protein L2 Tax=RBG_16_Euryarchaeota_67_27_curated
ribosomal protein L2
13_2_20cm_2_scaffold_2023_18
RBG_19FT_COMBO_Euryarchaeota_69_17_curated, Euryarchaeota, Archaea

Not on your lists


comp(8613..8894)
DNA (282bp) protein (94aa)
50S ribosomal protein L23P n=2 Tax=Euryarchaeota RepID=M9SFF6_9EURY
50S ribosomal protein L23P Tax=RBG_19FT_COMBO_Euryarchaeota_69_17_curated
50S ribosomal protein L23P
13_2_20cm_2_scaffold_2023_19

Not on your lists


comp(8891..9772)
DNA (882bp) protein (294aa)
50S ribosomal protein L4 n=1 Tax=Candidatus Methanomassiliicoccus intestinalis Issoire-Mx1 RepID=R9T5I4_9EURY
50S ribosomal protein L4P {ECO:0000313|EMBL:AJS13122.1}; TaxID=115547 species="Archaea; environmental samples.;" source="uncultured archaeon.;"
rpl4lp; 50S ribosomal protein L4P
13_2_20cm_2_scaffold_2023_20
RBG_19FT_COMBO_Euryarchaeota_69_17_curated, Euryarchaeota, Archaea

Not on your lists


comp(9839..10843)
DNA (1005bp) protein (335aa)
50S ribosomal protein L3 n=1 Tax=Candidatus Methanomassiliicoccus intestinalis Issoire-Mx1 RepID=R9T8W8_9EURY rbh
rpl3p; 50S ribosomal protein L3P Tax=RBG_19FT_COMBO_Euryarchaeota_69_17_curated
rpl3p; 50S ribosomal protein L3P
13_2_20cm_2_scaffold_2023_21
unknown

Not on your lists

comp(10965..11129)
DNA (165bp) protein (55aa)

This feature has no annotations

13_2_20cm_2_scaffold_2023_22
RBG_16_Euryarchaeota_68_13_curated, Euryarchaeota, Archaea

Not on your lists

11308..11871
DNA (564bp) protein (188aa)
Putative Ras family protein n=1 Tax=uncultured marine microorganism HF4000_APKG10F13 RepID=B3TBS9_9ZZZZ
small GTP-binding protein Tax=RBG_16_Euryarchaeota_68_13_curated
small GTP-binding protein
13_2_20cm_2_scaffold_2023_23
RBG_16_Euryarchaeota_68_13_curated, Euryarchaeota, Archaea

Not on your lists

11937..12491
DNA (555bp) protein (185aa)
Putative Ras family protein n=1 Tax=uncultured marine microorganism HF4000_APKG10F13 RepID=B3TBS9_9ZZZZ
small GTP-binding protein Tax=RBG_16_Euryarchaeota_68_13_curated
small GTP-binding protein
13_2_20cm_2_scaffold_2023_24
RBG_16_Euryarchaeota_67_27_curated, Euryarchaeota, Archaea

Not on your lists

12667..13017
DNA (351bp) protein (117aa)
Putative Ras family protein n=1 Tax=uncultured marine microorganism HF4000_APKG10F13 RepID=B3TBS9_9ZZZZ
hypothetical protein Tax=RBG_16_Euryarchaeota_67_27_curated
small GTP-binding protein
13_2_20cm_2_scaffold_2023_25
RBG_19FT_COMBO_Euryarchaeota_69_17_curated, Euryarchaeota, Archaea

Not on your lists

13210..15195
DNA (1986bp) protein (662aa)
hypothetical protein n=1 Tax=Methanomassiliicoccus luminyensis RepID=UPI00037D1C16 rbh
ATP-dependent protease Lon Tax=RBG_19FT_COMBO_Euryarchaeota_69_17_curated
ATP-dependent protease Lon
13_2_20cm_2_scaffold_2023_26
RBG_19FT_COMBO_Euryarchaeota_69_17_curated, Euryarchaeota, Archaea

Not on your lists

15213..15380
DNA (168bp) protein (56aa)
Tax=RBG_19FT_COMBO_Euryarchaeota_69_17_curated
13_2_20cm_2_scaffold_2023_27
RBG_16_Euryarchaeota_68_13_curated, Euryarchaeota, Archaea

Not on your lists

15377..15925
DNA (549bp) protein (183aa)
nicotinamide-nucleotide adenylyltransferase (EC:2.7.7.1); K00952 nicotinamide-nucleotide adenylyltransferase [EC:2.7.7.1] Tax=RBG_16_Euryarchaeota_68_13_curated
nicotinamide-nucleotide adenylyltransferase (EC:2.7.7.1)
Nicotinamide-nucleotide adenylyltransferase n=1 Tax=Aciduliprofundum boonei (strain DSM 19572 / T469) RepID=B5IAJ9_ACIB4
13_2_20cm_2_scaffold_2023_28
RBG_16_Euryarchaeota_68_13_curated, Euryarchaeota, Archaea

Not on your lists

comp(16105..16929)
DNA (825bp) protein (275aa)
hypothetical protein Tax=RBG_16_Euryarchaeota_68_13_curated
13_2_20cm_2_scaffold_2023_29
RBG_19FT_COMBO_Euryarchaeota_69_17_curated, Euryarchaeota, Archaea

Not on your lists

comp(16981..18366)
DNA (1386bp) protein (462aa)
Integral membrane protein n=1 Tax=Aciduliprofundum boonei (strain DSM 19572 / T469) RepID=B5IBK5_ACIB4
hypothetical protein Tax=RBG_19FT_COMBO_Euryarchaeota_69_17_curated
hypothetical protein
13_2_20cm_2_scaffold_2023_30

Not on your lists

comp(18363..19937)
DNA (1575bp) protein (525aa)
Putative uncharacterized protein hyuB {ECO:0000313|EMBL:CBH38595.1}; EC=3.5.2.9 {ECO:0000313|EMBL:CBH38595.1};; TaxID=115547 species="Archaea; environmental samples.;" source="uncultured archaeon.;"
5-oxoprolinase (EC:3.5.2.9)
Putative uncharacterized protein hyuB n=1 Tax=uncultured archaeon RepID=D1J915_9ARCH rbh
Displaying items 1-30 of 35 in total

View Taxonomy