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13_2_20cm_2_scaffold_211

Search features with annotation key words

Displaying items 1-30 of 37 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_2_20cm_2_scaffold_211_1
RBG_16_Euryarchaeota_67_27_curated, Euryarchaeota, Archaea

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comp(3..617)
DNA (615bp) protein (205aa)
korB; 2-oxoglutarate synthase subunit beta (EC:1.2.7.3) Tax=RBG_16_Euryarchaeota_67_27_curated
korB; 2-oxoglutarate synthase subunit beta (EC:1.2.7.3)
2-oxoglutarate synthase subunit beta n=1 Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0IEJ8_NITGG
13_2_20cm_2_scaffold_211_2
RBG_16_Euryarchaeota_67_27_curated, Euryarchaeota, Archaea

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comp(607..2580)
DNA (1974bp) protein (658aa)
korA; 2-oxoglutarate synthase subunit alpha (EC:1.2.7.3) Tax=RBG_16_Euryarchaeota_67_27_curated
2-oxoacid:acceptor oxidoreductase, alpha subunit (EC:1.2.7.3)
2-oxoglutarate ferredoxin oxidoreductase subunit alpha n=1 Tax=uncultured candidate division OP1 bacterium RepID=H5SVM2_9BACT rbh
13_2_20cm_2_scaffold_211_3
RBG_19FT_COMBO_Euryarchaeota_69_17_curated, Euryarchaeota, Archaea

Not on your lists

comp(2768..3754)
DNA (987bp) protein (329aa)
Transcription initiation factor IIB n=1 Tax=Thermoplasmatales archaeon A-plasma RepID=T0NBH8_9EURY
transcription initiation factor TFIIIB, Brf1 subunit/transcription initiation factor TFIIB Tax=RBG_19FT_COMBO_Euryarchaeota_69_17_curated
Transcription initiation factor B
13_2_20cm_2_scaffold_211_4
RBG_16_Euryarchaeota_67_27_curated, Euryarchaeota, Archaea

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4062..4493
DNA (432bp) protein (144aa)
fumarase (EC:4.2.1.2); K01679 fumarate hydratase, class II [EC:4.2.1.2] Tax=RBG_16_Euryarchaeota_67_27_curated
Fumarate hydratase class II n=1 Tax=Thermobaculum terrenum (strain ATCC BAA-798 / YNP1) RepID=D1CEI7_THET1
fumarate lyase
13_2_20cm_2_scaffold_211_5
RBG_16_Euryarchaeota_67_27_curated, Euryarchaeota, Archaea

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4493..5344
DNA (852bp) protein (284aa)
fumarase (EC:4.2.1.2); K01679 fumarate hydratase, class II [EC:4.2.1.2] Tax=RBG_16_Euryarchaeota_67_27_curated
fumarase (EC:4.2.1.2); K01679 fumarate hydratase, class II [EC:4.2.1.2] id=14426331 bin=bin1_lowGC species=Thermaerobacter subterraneus genus=Thermaerobacter taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=bin1_lowGC organism_group=Unknown_CP
fumarase (EC:4.2.1.2)
13_2_20cm_2_scaffold_211_6
Bradyrhizobium sp. YR681, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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5341..5676
DNA (336bp) protein (112aa)
Putative enzyme involved in biosynthesis of extracellular polysaccharides n=1 Tax=Bradyrhizobium sp. YR681 RepID=J2WFP2_9BRAD
Putative enzyme involved in biosynthesis of extracellular polysaccharides {ECO:0000313|EMBL:EJN11475.1}; TaxID=1144344 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobi
polysaccharide biosynthesis protein
13_2_20cm_2_scaffold_211_7
RBG_16_Euryarchaeota_68_12_curated, Euryarchaeota, Archaea

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comp(5771..7267)
DNA (1497bp) protein (499aa)
aldehyde dehydrogenase (EC:1.2.1.3); K00128 aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] Tax=RBG_16_Euryarchaeota_68_12_curated
aldehyde dehydrogenase (EC:1.2.1.3)
Aldehyde dehydrogenase n=1 Tax=Methanosarcina mazei (strain ATCC BAA-159 / DSM 3647 / Goe1 / Go1 / JCM 11833 / OCM 88) RepID=Q8Q0T7_METMA
13_2_20cm_2_scaffold_211_8
RBG_16_Euryarchaeota_67_27_curated, Euryarchaeota, Archaea

Not on your lists

comp(7338..8612)
DNA (1275bp) protein (425aa)
histidinol-phosphate phosphatase family protein; K03273 D-glycero-D-manno-heptose 1,7-bisphosphate phosphatase [EC:3.1.3.82 3.1.3.83] Tax=RBG_16_Euryarchaeota_67_27_curated
D,D-heptose 1,7-bisphosphate phosphatase n=2 Tax=Geobacter metallireducens RepID=Q39X59_GEOMG
gmhB; D-glycero-D-mannoheptose-1,7-bisphosphate phosphatase
13_2_20cm_2_scaffold_211_9
RBG_19FT_COMBO_Euryarchaeota_69_17_curated, Euryarchaeota, Archaea

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comp(8664..9302)
DNA (639bp) protein (213aa)
O-methyltransferase family protein n=1 Tax=uncultured candidate division OP1 bacterium RepID=H5SRI1_9BACT
O-methyltransferase Tax=RBG_19FT_COMBO_Euryarchaeota_69_17_curated
O-methyltransferase
13_2_20cm_2_scaffold_211_10
RBG_16_Euryarchaeota_67_27_curated, Euryarchaeota, Archaea

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9338..9553
DNA (216bp) protein (72aa)
Tax=RBG_16_Euryarchaeota_67_27_curated
13_2_20cm_2_scaffold_211_11
RBG_16_Euryarchaeota_68_13_curated, Euryarchaeota, Archaea

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9955..11184
DNA (1230bp) protein (410aa)
hypothetical protein n=1 Tax=Methanomassiliicoccus luminyensis RepID=UPI0003821D54
tRNA N6-threonylcarbamoyladenosine 2-methylthiotransferase (putative) / tRNA-i(6)A37 methylthiotransferase Tax=RBG_16_Euryarchaeota_68_13_curated
2-methylthioadenine synthetase
13_2_20cm_2_scaffold_211_12
unknown

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11284..11700
DNA (417bp) protein (139aa)

This feature has no annotations

13_2_20cm_2_scaffold_211_trna_1
unknown

Not on your lists

11751..11823
DNA (73bp)
transferRNA
13_2_20cm_2_scaffold_211_13
RBG_16_Euryarchaeota_67_27_curated, Euryarchaeota, Archaea

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11830..12087
DNA (258bp) protein (86aa)
Tax=RBG_16_Euryarchaeota_67_27_curated
13_2_20cm_2_scaffold_211_14
RBG_16_Euryarchaeota_67_27_curated, Euryarchaeota, Archaea

Not on your lists

comp(12020..14026)
DNA (2007bp) protein (669aa)
hypothetical protein n=1 Tax=Methanomassiliicoccus luminyensis RepID=UPI00037EA70C rbh
7-cyano-7-deazaguanine tRNA-ribosyltransferase Tax=RBG_16_Euryarchaeota_67_27_curated
7-cyano-7-deazaguanine tRNA-ribosyltransferase
13_2_20cm_2_scaffold_211_15
RBG_16_Euryarchaeota_67_27_curated, Euryarchaeota, Archaea

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14073..14864
DNA (792bp) protein (264aa)
Uncharacterized protein n=1 Tax=Methanosalsum zhilinae (strain DSM 4017 / NBRC 107636 / OCM 62 / WeN5) RepID=F7XQC2_METZD
hypothetical protein; K07502 hypothetical protein Tax=RBG_16_Euryarchaeota_67_27_curated
hypothetical protein
13_2_20cm_2_scaffold_211_16
RBG_16_Euryarchaeota_67_27_curated, Euryarchaeota, Archaea

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comp(14878..15222)
DNA (345bp) protein (115aa)
hypothetical protein Tax=RBG_16_Euryarchaeota_67_27_curated
Uncharacterized protein id=4880920 bin=GWC2_Pelobacter_58_13 species=Blastopirellula marina genus=Blastopirellula taxon_order=Planctomycetales taxon_class=Planctomycetia phylum=Planctomycetes tax=GWC2_Pelobacter_58_13 organism_group=Deltaproteobacteria organism_desc=Good +
hypothetical protein
13_2_20cm_2_scaffold_211_17
RBG_16_Euryarchaeota_67_27_curated, Euryarchaeota, Archaea

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comp(15253..15621)
DNA (369bp) protein (123aa)
Uncharacterized protein n=1 Tax=Candidatus Methanomassiliicoccus intestinalis Issoire-Mx1 RepID=R9TAM1_9EURY
hypothetical protein Tax=RBG_16_Euryarchaeota_67_27_curated
hypothetical protein
13_2_20cm_2_scaffold_211_18
RBG_19FT_COMBO_Euryarchaeota_69_17_curated, Euryarchaeota, Archaea

Not on your lists

comp(15627..16031)
DNA (405bp) protein (135aa)
Transcriptional regulatory protein zraR (Fragment) n=1 Tax=sediment metagenome RepID=D9PFH3_9ZZZZ
Fis family two component sigma-54 specific transcriptional regulator; K02667 two-component system, NtrC family, response regulator PilR Tax=RBG_19FT_COMBO_Euryarchaeota_69_17_curated
Fis family transcriptional regulator
13_2_20cm_2_scaffold_211_19
RBG_19FT_COMBO_Euryarchaeota_69_17_curated, Euryarchaeota, Archaea

Not on your lists

comp(16129..17193)
DNA (1065bp) protein (355aa)
Multi-sensor hybrid histidine kinase n=1 Tax=mine drainage metagenome RepID=T1A238_9ZZZZ
two component, sigma54 specific, Fis family transcriptional regulator Tax=RBG_19FT_COMBO_Euryarchaeota_69_17_curated
response regulator with CheY-like receiver, AAA-type ATPase, and DNA-binding domains
13_2_20cm_2_scaffold_211_20
RBG_19FT_COMBO_Euryarchaeota_69_17_curated, Euryarchaeota, Archaea

Not on your lists

comp(17190..19586)
DNA (2397bp) protein (799aa)
PAS/PAC sensor signal transduction histidine kinase Tax=RBG_19FT_COMBO_Euryarchaeota_69_17_curated
Putative Histidine kinase id=3522055 bin=GWC2_Ignavibacteria_38_9 species=RAAC39 genus=RAAC39 taxon_order=RAAC39 taxon_class=Ignavibacteria phylum=Ignavibacteriae tax=GWC2_Ignavibacteria_38_9 organism_group=Ignavibacteria
PAS sensor protein
13_2_20cm_2_scaffold_211_21
RBG_19FT_COMBO_Euryarchaeota_69_17_curated, Euryarchaeota, Archaea

Not on your lists

comp(19732..20457)
DNA (726bp) protein (242aa)
hypothetical protein n=1 Tax=Methanomassiliicoccus luminyensis RepID=UPI000380433D
RecA-superfamily ATPase possibly involved in signal transduction Tax=RBG_19FT_COMBO_Euryarchaeota_69_17_curated
RecA-superfamily ATPase possibly involved in signal transduction
13_2_20cm_2_scaffold_211_22
RBG_16_Euryarchaeota_67_27_curated, Euryarchaeota, Archaea

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20557..21177
DNA (621bp) protein (207aa)
Putative uncharacterized protein n=1 Tax=Aciduliprofundum boonei (strain DSM 19572 / T469) RepID=B5ICL4_ACIB4
hypothetical protein Tax=RBG_16_Euryarchaeota_67_27_curated
hypothetical protein
13_2_20cm_2_scaffold_211_23
RBG_16_Euryarchaeota_68_13_curated, Euryarchaeota, Archaea

Not on your lists

21190..21543
DNA (354bp) protein (118aa)
peptidyl-tRNA hydrolase; K04794 peptidyl-tRNA hydrolase, PTH2 family [EC:3.1.1.29] Tax=RBG_16_Euryarchaeota_68_13_curated
Peptidyl-tRNA hydrolase n=1 Tax=Thermogladius cellulolyticus (strain 1633) RepID=I3TDZ8_THEC1
peptidyl-tRNA hydrolase
13_2_20cm_2_scaffold_211_24
RBG_16_Euryarchaeota_67_27_curated, Euryarchaeota, Archaea

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21547..22119
DNA (573bp) protein (191aa)
hypothetical protein n=1 Tax=Methanomassiliicoccus luminyensis RepID=UPI00037C5D1A
hypothetical protein; K09120 hypothetical protein Tax=RBG_16_Euryarchaeota_67_27_curated
hypothetical protein
13_2_20cm_2_scaffold_211_25
RBG_16_Archaea_50_20_curated, Archaea

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comp(22157..23062)
DNA (906bp) protein (302aa)
proline-specific peptidase; K01259 proline iminopeptidase [EC:3.4.11.5] Tax=RBG_16_Archaea_50_20_curated
Proline-specific peptidase n=1 Tax=mine drainage metagenome RepID=T0ZMM1_9ZZZZ
peptidase
13_2_20cm_2_scaffold_211_26
RBG_19FT_COMBO_Euryarchaeota_69_17_curated, Euryarchaeota, Archaea

Not on your lists


comp(23105..24139)
DNA (1035bp) protein (345aa)
hypothetical protein n=1 Tax=Methanomassiliicoccus luminyensis RepID=UPI0003662022 rbh
putative cell division protein Tax=RBG_19FT_COMBO_Euryarchaeota_69_17_curated
putative cell division protein
13_2_20cm_2_scaffold_211_27
RBG_16_Euryarchaeota_67_27_curated, Euryarchaeota, Archaea

Not on your lists


comp(24729..25424)
DNA (696bp) protein (232aa)
hypothetical protein n=1 Tax=Methanomassiliicoccus luminyensis RepID=UPI00036DC8F0
translation initiation factor IF-2 subunit gamma Tax=RBG_16_Euryarchaeota_67_27_curated
translation initiation factor IF-2 subunit gamma
13_2_20cm_2_scaffold_211_28
RBG_16_Euryarchaeota_68_13_curated, Euryarchaeota, Archaea

Not on your lists

comp(25421..25822)
DNA (402bp) protein (134aa)
Translation initiation factor IF-2 subunit gamma n=1 Tax=mine drainage metagenome RepID=T1AX06_9ZZZZ
Suspect SCG annotation. See neighboring gene [13_2_20cm_2_scaffold_211_27].
translation initiation factor 2 subunit gamma (aeIF-2g) Tax=RBG_16_Euryarchaeota_68_13_curated
eif2g; translation initiation factor 2 subunit gamma
13_2_20cm_2_scaffold_211_29
RBG_16_Euryarchaeota_68_13_curated, Euryarchaeota, Archaea

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comp(25819..26022)
DNA (204bp) protein (68aa)
30S ribosomal protein S6e n=1 Tax=Aciduliprofundum sp. (strain MAR08-339) RepID=L0HK77_ACIS0
ribosomal protein S6e; K02991 small subunit ribosomal protein S6e Tax=RBG_16_Euryarchaeota_68_13_curated
ribosomal protein S6E (S10)
Displaying items 1-30 of 37 in total

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