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13_2_20cm_2_scaffold_2449

Search features with annotation key words

Displaying 26 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_2_20cm_2_scaffold_2449_1
Myxococcus sp. (contaminant ex DSM 436), Myxococcus, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(1..588)
DNA (588bp) protein (196aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=1297742 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Cystobacterineae; My
Sensor histidine kinase n=1 Tax=Myxococcus sp. (contaminant ex DSM 436) RepID=U2U4A2_9DELT
sensor histidine kinase
13_2_20cm_2_scaffold_2449_2
RIFCSPLOWO2_12_FULL_Betaproteobacteria_65_14_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(616..1230)
DNA (615bp) protein (205aa)
Sensor histidine kinase n=1 Tax=Myxococcus sp. (contaminant ex DSM 436) RepID=U2U4A2_9DELT
sensor histidine kinase Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_65_14_curated
sensor histidine kinase
13_2_20cm_2_scaffold_2449_3
RBG_13_Deltaproteobacteria_61_14_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1384..2205)
DNA (822bp) protein (274aa)
diguanylate cyclase Tax=RBG_13_Deltaproteobacteria_61_14_curated
Diguanylate cyclase id=4516555 bin=GWC2_Nitrospirae-rel_56_14 species=Pelobacter propionicus genus=Pelobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Nitrospirae-rel_56_14 organism_group=Nitrospirae organism_desc=Pretty good; based on recA
diguanylate cyclase
13_2_20cm_2_scaffold_2449_4
GWC2_Gemmatimonadetes_71_10_curated, Gemmatimonadetes, Bacteria

Not on your lists

comp(2205..3437)
DNA (1233bp) protein (411aa)
molybdenum cofactor synthesis domain-containing protein; K03750 molybdopterin molybdotransferase [EC:2.10.1.1] Tax=GWC2_Gemmatimonadetes_71_10_curated
MoeA domain protein domain I and II
Molybdenum cofactor synthesis domain protein id=3806663 bin=GWA2_Methylomirabilis_73_35 species=Haliangium ochraceum genus=Haliangium taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_2_20cm_2_scaffold_2449_5
GWC2_Gemmatimonadetes_71_10_curated, Gemmatimonadetes, Bacteria

Not on your lists

comp(3434..3967)
DNA (534bp) protein (178aa)
Molybdopterin-guanine dinucleotide biosynthesis protein B MobB n=1 Tax=Desulfotignum phosphitoxidans DSM 13687 RepID=S0G3H8_9DELT
Molybdopterin-guanine dinucleotide biosynthesis protein B Tax=GWC2_Gemmatimonadetes_71_10_curated
molybdopterin-guanine dinucleotide biosynthesis MobB region
13_2_20cm_2_scaffold_2449_6
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

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comp(3949..4542)
DNA (594bp) protein (198aa)
molybdopterin-guanine dinucleotide biosynthesis protein A; K03752 molybdopterin-guanine dinucleotide biosynthesis protein A [EC:2.7.7.77] Tax=RBG_16_Gemmatimonadetes_66_8_curated
Molybdopterin-guanine dinucleotide biosynthesis protein A
Probable molybdenum cofactor guanylyltransferase id=3877310 bin=GWF2_Methylomirabilis_70_14 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_2_20cm_2_scaffold_2449_7
Paracoccus sp. 5503, Paracoccus, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4924..5640)
DNA (717bp) protein (239aa)
hypothetical protein n=1 Tax=Arhodomonas aquaeolei RepID=UPI0003713DB1
CoA-binding protein {ECO:0000313|EMBL:KGJ18468.1}; TaxID=1525717 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Paracoccus.;" source="Paracoccus sp. 5503.;"
CoA-binding domain-containing protein
13_2_20cm_2_scaffold_2449_8
GWC2_Gemmatimonadetes_71_10_curated, Gemmatimonadetes, Bacteria

Not on your lists

comp(5637..6362)
DNA (726bp) protein (242aa)
formate dehydrogenase family accessory protein (FdhD) Tax=GWC2_Gemmatimonadetes_71_10_curated
formate dehydrogenase family accessory protein (FdhD) id=24540630 bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
formate dehydrogenase family accessory protein FdhD
13_2_20cm_2_scaffold_2449_9
Chlorobium phaeovibrioides, Chlorobium, Chlorobiales, Chlorobia, Chlorobi, Bacteria

Not on your lists

comp(6388..6789)
DNA (402bp) protein (134aa)
6-pyruvoyl tetrahydropterin synthase n=1 Tax=Poribacteria bacterium WGA-3G RepID=UPI0003B6991C
Uncharacterized protein {ECO:0000313|EMBL:ABP37095.1}; TaxID=290318 species="Bacteria; Chlorobi; Chlorobia; Chlorobiales; Chlorobiaceae; Chlorobium/Pelodictyon group; Chlorobium.;" source="Prosthecoch
putative 6-pyruvoyl tetrahydropterin synthase
13_2_20cm_2_scaffold_2449_10
unknown

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comp(6793..6954)
DNA (162bp) protein (54aa)

This feature has no annotations

13_2_20cm_2_scaffold_2449_11
GWC2_Gemmatimonadetes_71_10_curated, Gemmatimonadetes, Bacteria

Not on your lists

comp(6996..7682)
DNA (687bp) protein (229aa)
ABC transporter related protein n=1 Tax=Sphaerobacter thermophilus (strain DSM 20745 / S 6022) RepID=D1CAF4_SPHTD
ABC transporter; K06857 tungstate transport system ATP-binding protein Tax=GWC2_Gemmatimonadetes_71_10_curated
ABC transporter
13_2_20cm_2_scaffold_2449_12
GWA2_RIF03_38_11_curated, RIF3, Bacteria

Not on your lists

comp(7675..8331)
DNA (657bp) protein (219aa)
Binding-protein-dependent transport systems inner membrane component n=1 Tax=Desulfurivibrio alkaliphilus (strain DSM 19089 / UNIQEM U267 / AHT2) RepID=D6Z131_DESAT
binding-protein-dependent transport systems inner membrane component; K05773 tungstate transport system permease protein Tax=GWA2_RIF03_38_11_curated
binding-protein-dependent transport systems inner membrane component
13_2_20cm_2_scaffold_2449_13
unknown

Not on your lists

comp(8358..9086)
DNA (729bp) protein (243aa)

This feature has no annotations

13_2_20cm_2_scaffold_2449_14
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

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comp(9086..10639)
DNA (1554bp) protein (518aa)
2,3-bisphosphoglycerate-independent phosphoglycerate mutase n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1AB94_GEMAT
2,3-bisphosphoglycerate-independent phosphoglycerate mutase
2,3-bisphosphoglycerate-independent phosphoglycerate mutase {ECO:0000256|HAMAP-Rule:MF_01038, ECO:0000256|SAAS:SAAS00058362}; Short=BPG-independent PGAM {ECO:0000256|HAMAP-Rule:MF_01038};; Short=Phosp
13_2_20cm_2_scaffold_2449_15
GWC2_Gemmatimonadetes_71_10_curated, Gemmatimonadetes, Bacteria

Not on your lists

10686..11705
DNA (1020bp) protein (340aa)
Tax=GWC2_Gemmatimonadetes_71_10_curated
13_2_20cm_2_scaffold_2449_16
GWC2_Gemmatimonadetes_71_10_curated, Gemmatimonadetes, Bacteria

Not on your lists

11702..12022
DNA (321bp) protein (107aa)
guaB; inosine-5'-monophosphate dehydrogenase (EC:1.1.1.205); K00088 IMP dehydrogenase [EC:1.1.1.205] Tax=GWC2_Gemmatimonadetes_71_10_curated
Uncharacterized protein n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1AB89_GEMAT
hypothetical protein
13_2_20cm_2_scaffold_2449_17
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

12031..13488
DNA (1458bp) protein (486aa)
guaB; inosine-5'-monophosphate dehydrogenase (EC:1.1.1.205); K00088 IMP dehydrogenase [EC:1.1.1.205] Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
guaB; inosine-5'-monophosphate dehydrogenase (EC:1.1.1.205)
Inosine-5'-monophosphate dehydrogenase n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1AB87_GEMAT
13_2_20cm_2_scaffold_2449_18
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

13584..15098
DNA (1515bp) protein (505aa)
Amino acid permease-associated region n=1 Tax=Burkholderia sp. RPE64 RepID=R4WLR7_9BURK
amino acid transporter Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
amino acid permease-associated region
13_2_20cm_2_scaffold_2449_19
R_Gemmatimonadetes_71_11, Gemmatimonadetes, Bacteria

Not on your lists

15197..16225
DNA (1029bp) protein (343aa)
Uncharacterized protein n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1AB85_GEMAT
hypothetical protein; K06881 phosphoesterase RecJ domain-containing protein Tax=RIFCSPLOWO2_02_FULL_Gemmatimonadetes_71_11_curated
phosphoesterase RecJ domain protein
13_2_20cm_2_scaffold_2449_20
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

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16222..17343
DNA (1122bp) protein (374aa)
Uncharacterized protein n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1AB84_GEMAT
hypothetical protein; K03593 ATP-binding protein involved in chromosome partitioning Tax=RBG_16_Gemmatimonadetes_66_8_curated
ATPase-like, ParA/MinD
13_2_20cm_2_scaffold_2449_21
R_Gemmatimonadetes_71_11, Gemmatimonadetes, Bacteria

Not on your lists

17345..19006
DNA (1662bp) protein (554aa)
hypothetical protein; K03593 ATP-binding protein involved in chromosome partitioning Tax=RIFCSPLOWO2_02_FULL_Gemmatimonadetes_71_11_curated
13_2_20cm_2_scaffold_2449_22
R_Betaproteobacteria_67_26, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18999..20411
DNA (1413bp) protein (471aa)
pleD; pleD gene product; K02488 two-component system, cell cycle response regulator id=12554452 bin=CNBR_ACIDO species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Cyanobacteria tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
diguanylate cyclase Tax=RIFCSPLOWO2_02_FULL_Betaproteobacteria_67_26_curated
diguanylate cyclase
13_2_20cm_2_scaffold_2449_23
R_Ignavibacteria_55_14, Ignavibacteriales, Ignavibacteria, Ignavibacteriae, Bacteria

Not on your lists

20436..21362
DNA (927bp) protein (309aa)
Anti-sigma-factor antagonist id=4337253 bin=GWC2_Ignavibacteria_56_12 species=Conexibacter woesei genus=Conexibacter taxon_order=Solirubrobacterales taxon_class=Actinobacteria phylum=Actinobacteria tax=GWC2_Ignavibacteria_56_12 organism_group=Ignavibacteria organism_desc=Larger genome
anti-sigma-factor antagonist Tax=RIFCSPLOWO2_02_FULL_Ignavibacteria_55_14_curated
anti-sigma-factor antagonist
13_2_20cm_2_scaffold_2449_24
R_Ignavibacteria_55_14, Ignavibacteriales, Ignavibacteria, Ignavibacteriae, Bacteria

Not on your lists

21393..21791
DNA (399bp) protein (133aa)
Antagonist protein RsbS id=4337252 bin=GWC2_Ignavibacteria_56_12 species=Mycobacterium xenopi genus=Mycobacterium taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=GWC2_Ignavibacteria_56_12 organism_group=Ignavibacteria organism_desc=Larger genome
anti-sigma-factor antagonist Tax=RIFCSPLOWO2_02_FULL_Ignavibacteria_55_14_curated
rsbS; sigma activity regulator
13_2_20cm_2_scaffold_2449_25
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

21784..22191
DNA (408bp) protein (136aa)
hypothetical protein n=1 Tax=Burkholderia sp. JPY347 RepID=UPI0003707C03
Anti-sigma regulatory factor (Ser/Thr protein kinase) {ECO:0000313|EMBL:KCZ71458.1}; TaxID=1392998 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae;
putative anti-sigma regulatory factor serine/threonine protein kinase
13_2_20cm_2_scaffold_2449_26
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

22173..22478
DNA (306bp) protein (102aa)
Stage II sporulation protein E (SpoIIE) {ECO:0000313|EMBL:KCZ71459.1}; EC=3.1.3.3 {ECO:0000313|EMBL:KCZ71459.1};; TaxID=1392998 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Can
hypothetical protein n=1 Tax=Burkholderia sp. JPY347 RepID=UPI0003683974
stage II sporulation protein M
Displaying 26 items

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