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13_2_20cm_2_scaffold_2584

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Displaying 24 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_2_20cm_2_scaffold_2584_1
RLO_Deltaproteobacteria_60_19, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1..390
DNA (390bp) protein (130aa)
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_60_19_curated
Uncharacterized protein id=2107851 bin=GWD2_Deltaproteobacteria_55_8 species=Anaerobaculum mobile genus=Anaerobaculum taxon_order=Synergistales taxon_class=Synergistia phylum=Synergistetes tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
hypothetical protein
13_2_20cm_2_scaffold_2584_2
RLO_Deltaproteobacteria_60_19, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(403..1062)
DNA (660bp) protein (220aa)
Zn-dependent hydrolases of the beta-lactamase fold Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_60_19_curated
Zn-dependent hydrolases of the beta-lactamase fold protein id=2107849 bin=GWD2_Deltaproteobacteria_55_8 species=Moorella thermoacetica genus=Moorella taxon_order=Thermoanaerobacterales taxon_class=Clostridia phylum=Firmicutes tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria rbh
Zn-dependent hydrolases of the beta-lactamase fold
13_2_20cm_2_scaffold_2584_3
RLO_Deltaproteobacteria_60_19, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1059..1826)
DNA (768bp) protein (256aa)
ABC transporter related id=2107848 bin=GWD2_Deltaproteobacteria_55_8 species=Thermofilum pendens genus=Thermofilum taxon_order=Thermoproteales taxon_class=Thermoprotei phylum=Crenarchaeota tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria rbh
ABC transporter-like protein; K10116 maltooligosaccharide transport system ATP-binding protein Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_60_19_curated
ABC-type sugar/spermidine/putrescine/iron/thiamine transport system, ATPase component
13_2_20cm_2_scaffold_2584_4
RLO_Deltaproteobacteria_60_19, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1929..2714
DNA (786bp) protein (262aa)
coenzyme PQQ biosynthesis protein C (EC:1.3.3.11)
Pyrroloquinoline quinone biosynthesis protein PqqC n=1 Tax=uncultured archaeon W5-61a RepID=H9BX84_9ARCH
coenzyme PQQ biosynthesis protein C Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_60_19_curated
13_2_20cm_2_scaffold_2584_5
RIFOXYA2_FULL_Deltaproteobacteria_55_11_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2717..3628
DNA (912bp) protein (304aa)
L-threonine aldolase; K01620 threonine aldolase [EC:4.1.2.5] Tax=RIFOXYA2_FULL_Deltaproteobacteria_55_11_curated
L-threonine aldolase id=2107847 bin=GWD2_Deltaproteobacteria_55_8 species=Candidatus Koribacter versatilis genus=Candidatus Koribacter taxon_order=unknown taxon_class=unknown phylum=Acidobacteria tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
L-threonine aldolase
13_2_20cm_2_scaffold_2584_6
RLO_Deltaproteobacteria_57_22, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3646..4563)
DNA (918bp) protein (306aa)
2-amino-3-carboxymuconate-6-semialdehyde decarboxylase (EC:4.1.1.45); K03392 aminocarboxymuconate-semialdehyde decarboxylase [EC:4.1.1.45] Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_57_22_curated
Probable 2-amino-3-carboxymuconate-6-semialdehyde decarboxylase id=1836188 bin=GWD2_Deltaproteobacteria_55_8 species=unknown genus=Brevibacillus taxon_order=Bacillales taxon_class=Bacilli phylum=Firmicutes tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria rbh
amidohydrolase 2
13_2_20cm_2_scaffold_2584_7
Methanosarcina vacuolata, Methanosarcina, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

4748..5284
DNA (537bp) protein (179aa)
Integral membrane protein n=1 Tax=Methanosarcina barkeri (strain Fusaro / DSM 804) RepID=Q46FR9_METBF
Integral membrane protein
Integral membrane protein {ECO:0000313|EMBL:AKB42915.1}; TaxID=1434123 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Methanosarcinaceae; Methanosarcina.;" source="Methanosarcina
13_2_20cm_2_scaffold_2584_8
RIFOXYA2_FULL_Deltaproteobacteria_55_11_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5420..7207
DNA (1788bp) protein (596aa)
adenine deaminase (EC:3.5.4.2); K01486 adenine deaminase [EC:3.5.4.2] Tax=RIFOXYA2_FULL_Deltaproteobacteria_55_11_curated
adenine deaminase (EC:3.5.4.2)
Adenine deaminase id=1836193 bin=GWD2_Deltaproteobacteria_55_8 species=Cenarchaeum symbiosum genus=Cenarchaeum taxon_order=Cenarchaeales taxon_class=unknown phylum=Thaumarchaeota tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria rbh
13_2_20cm_2_scaffold_2584_9
GWD2_Deltaproteobacteria_55_8_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7080..7505)
DNA (426bp) protein (142aa)
Putative uncharacterized protein id=1990230 bin=GWD2_Deltaproteobacteria_55_8 species=Candidatus Nitrospira defluvii genus=Nitrospira taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
hypothetical protein Tax=GWD2_Deltaproteobacteria_55_8_curated
hypothetical protein
13_2_20cm_2_scaffold_2584_10
RLO_Deltaproteobacteria_60_19, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7710..8789
DNA (1080bp) protein (360aa)
ppcA; phenylphosphate carboxylase, alpha subunit Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_60_19_curated
Putative phenylphosphate carboxylase, alpha subunit id=1990228 bin=GWD2_Deltaproteobacteria_55_8 species=delta proteobacterium NaphS2 genus=unknown taxon_order=unknown taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria rbh
UbiD family decarboxylase
13_2_20cm_2_scaffold_2584_11
RLO_Deltaproteobacteria_60_19, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8782..9060
DNA (279bp) protein (93aa)
Putative phenylphosphate carboxylase, alpha subunit id=1990228 bin=GWD2_Deltaproteobacteria_55_8 species=delta proteobacterium NaphS2 genus=unknown taxon_order=unknown taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
ppcA; phenylphosphate carboxylase, alpha subunit Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_60_19_curated
UbiD family decarboxylase
13_2_20cm_2_scaffold_2584_12
RLO_Deltaproteobacteria_57_22, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9170..9373)
DNA (204bp) protein (68aa)
Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_57_22_curated
13_2_20cm_2_scaffold_2584_trna_1
unknown

Not on your lists

comp(9617..9700)
DNA (84bp)
transferRNA
13_2_20cm_2_scaffold_2584_13
RIFOXYA2_FULL_Deltaproteobacteria_55_11_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9715..10080)
DNA (366bp) protein (122aa)
secG; preprotein translocase subunit SecG; K03075 preprotein translocase subunit SecG Tax=RIFOXYA2_FULL_Deltaproteobacteria_55_11_curated
Preprotein translocase, SecG subunit id=1960478 bin=GWD2_Deltaproteobacteria_55_8 species=Geobacter metallireducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
protein translocase subunit
13_2_20cm_2_scaffold_2584_14
GWD2_Deltaproteobacteria_55_8_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10087..10851)
DNA (765bp) protein (255aa)
triosephosphate isomerase (EC:5.3.1.1); K01803 triosephosphate isomerase (TIM) [EC:5.3.1.1] Tax=GWD2_Deltaproteobacteria_55_8_curated
triosephosphate isomerase (EC:5.3.1.1)
Triosephosphate isomerase id=1960476 bin=GWD2_Deltaproteobacteria_55_8 species=Desulfobacca acetoxidans genus=Desulfobacca taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
13_2_20cm_2_scaffold_2584_15
GWD2_Deltaproteobacteria_55_8_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10848..12026)
DNA (1179bp) protein (393aa)
pgk; phosphoglycerate kinase (EC:2.7.2.3)
phosphoglycerate kinase Tax=GWD2_Deltaproteobacteria_55_8_curated
Phosphoglycerate kinase id=1960474 bin=GWD2_Deltaproteobacteria_55_8 species=Myxococcus stipitatus genus=Myxococcus taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria rbh
13_2_20cm_2_scaffold_2584_16
RLO_Deltaproteobacteria_60_19, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12133..12891
DNA (759bp) protein (253aa)
MotA/TolQ/ExbB proton channel; K03562 biopolymer transport protein TolQ Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_60_19_curated
Cell division and transport-associated protein TolQ id=1960472 bin=GWD2_Deltaproteobacteria_55_8 species=unknown genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria rbh
MotA/TolQ/ExbB proton channel
13_2_20cm_2_scaffold_2584_17
GWD2_Deltaproteobacteria_55_8_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12915..13337
DNA (423bp) protein (141aa)
Cell division and transport-associated protein TolR id=1960470 bin=GWD2_Deltaproteobacteria_55_8 species=Geobacter uraniireducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
biopolymer transport protein ExbD/TolR; K03560 biopolymer transport protein TolR Tax=GWD2_Deltaproteobacteria_55_8_curated
biopolymer transport protein ExbD/TolR
13_2_20cm_2_scaffold_2584_18
RIFOXYA2_FULL_Deltaproteobacteria_55_11_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13344..14282
DNA (939bp) protein (313aa)
TonB-like protein id=1960468 bin=GWD2_Deltaproteobacteria_55_8 species=Bdellovibrio bacteriovorus genus=Bdellovibrio taxon_order=Bdellovibrionales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
TonB-like protein; K03646 colicin import membrane protein Tax=RIFOXYA2_FULL_Deltaproteobacteria_55_11_curated
TonB-like protein
13_2_20cm_2_scaffold_2584_19
RIFOXYA2_FULL_Deltaproteobacteria_55_11_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14287..15597
DNA (1311bp) protein (437aa)
Protein TolB id=1960465 bin=GWD2_Deltaproteobacteria_55_8 species=uncultured Desulfobacterium sp. genus=Desulfobacterium taxon_order=Desulfobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria rbh
WD40 domain-containing protein; K03641 TolB protein Tax=RIFOXYA2_FULL_Deltaproteobacteria_55_11_curated
translocation protein TolB
13_2_20cm_2_scaffold_2584_20
RLO_Deltaproteobacteria_60_19, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15662..16240
DNA (579bp) protein (193aa)
OmpA/MotB domain protein id=2009844 bin=GWD2_Deltaproteobacteria_55_8 species=Pelobacter propionicus genus=Pelobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
pal; peptidoglycan-associated lipoprotein pal; K03640 peptidoglycan-associated lipoprotein Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_60_19_curated
hypothetical protein
13_2_20cm_2_scaffold_2584_21
GWD2_Deltaproteobacteria_55_8_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16288..17130
DNA (843bp) protein (281aa)
putative aspartyl/asparaginyl beta-hydroxylase (Aspartate beta-hydroxylase) (Peptide-aspartate beta-dioxygenase) (EC:1.14.11.16) Tax=GWD2_Deltaproteobacteria_55_8_curated
Putative aspartyl/asparaginyl beta-hydroxylase (Aspartate beta-hydroxylase) (Peptide-aspartate beta-dioxygenase) id=1960458 bin=GWD2_Deltaproteobacteria_55_8 species=Desulfobacterium autotrophicum genus=Desulfobacterium taxon_order=Desulfobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria rbh
ybgF; Tol-Pal system, periplasmic protein YbgF
13_2_20cm_2_scaffold_2584_22
RLO_Deltaproteobacteria_57_22, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17215..18066
DNA (852bp) protein (284aa)
FMN adenylyltransferase; riboflavin kinase (EC:2.7.7.2 2.7.1.26); K11753 riboflavin kinase / FMN adenylyltransferase [EC:2.7.1.26 2.7.7.2] Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_57_22_curated
Riboflavin biosynthesis protein RibF id=1960454 bin=GWD2_Deltaproteobacteria_55_8 species=Geobacter metallireducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria rbh
riboflavin biosynthesis protein RibF
13_2_20cm_2_scaffold_2584_23
RIFOXYA2_FULL_Deltaproteobacteria_55_11_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18076..18438
DNA (363bp) protein (121aa)
rluD; pseudouridine synthase (pseudouridines 1911, 1915, 1917 in 23S RNA) (EC:4.2.1.70) Tax=RIFOXYA2_FULL_Deltaproteobacteria_55_11_curated
ribosomal large subunit pseudouridine synthase D (EC:4.2.1.70)
Pseudouridine synthase id=1960451 bin=GWD2_Deltaproteobacteria_55_8 species=Thermosinus carboxydivorans genus=Thermosinus taxon_order=Selenomonadales taxon_class=Negativicutes phylum=Firmicutes tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
Displaying 24 items

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