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13_2_20cm_2_scaffold_2887

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Displaying 23 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_2_20cm_2_scaffold_2887_1
Gemmatimonas aurantiaca, Gemmatimonas, Gemmatimonadales, Gemmatimonadetes, Gemmatimonadetes, Bacteria

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comp(1..873)
DNA (873bp) protein (291aa)
Putative two-component hybrid sensor and regulator n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A5Z2_GEMAT
putative two-component hybrid sensor and regulator
Putative two-component hybrid sensor and regulator {ECO:0000313|EMBL:BAH37652.1}; TaxID=379066 species="Bacteria; Gemmatimonadetes; Gemmatimonadales; Gemmatimonadaceae; Gemmatimonas.;" source="Gemmati
13_2_20cm_2_scaffold_2887_2
Sorangium cellulosum, Sorangium, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(870..1544)
DNA (675bp) protein (225aa)
Uncharacterized protein n=1 Tax=Sorangium cellulosum (strain So ce56) RepID=A9FFL2_SORC5
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CAN95003.1}; TaxID=448385 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Sorangiineae; Polyangiaceae; Sorangium.;" source="Sorangium ce
13_2_20cm_2_scaffold_2887_3
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

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1752..2294
DNA (543bp) protein (181aa)
Putative transcriptional regulator n=1 Tax=Erythrobacter sp. SD-21 RepID=A5PDB7_9SPHN
PadR family transcriptional regulator Tax=RBG_16_Gemmatimonadetes_66_8_curated
transcriptional regulator PadR family protein
13_2_20cm_2_scaffold_2887_4
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

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comp(2305..2952)
DNA (648bp) protein (216aa)
peptidyl-prolyl cis-trans isomerase PpiA precursor (EC:5.2.1.8)
cyclophilin type peptidyl-prolyl cis-trans isomerase Tax=RBG_16_Gemmatimonadetes_66_8_curated
cyclophilin type peptidyl-prolyl cis-trans isomerase id=24533233 bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=Schlesneria paludicola genus=Schlesneria taxon_order=Planctomycetales taxon_class=Planctomycetia phylum=Planctomycetes tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
13_2_20cm_2_scaffold_2887_5
Parvibaculum lavamentivorans, Parvibaculum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(2970..3563)
DNA (594bp) protein (198aa)
ATP-dependent Clp protease proteolytic subunit {ECO:0000256|HAMAP-Rule:MF_00444, ECO:0000256|RuleBase:RU003567}; EC=3.4.21.92 {ECO:0000256|HAMAP-Rule:MF_00444};; Endopeptidase Clp {ECO:0000256|HAMAP-R
ATP-dependent Clp protease proteolytic subunit n=1 Tax=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) RepID=A7HNZ6_PARL1
endopeptidase Clp
13_2_20cm_2_scaffold_2887_6
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

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comp(3551..4597)
DNA (1047bp) protein (349aa)
UniRef90_D6U5B8 Molybdopterin dehydrogenase FAD-binding n=1 Tax=Ktedonobacter racemifer DSM 44963 RepID=D6U5B8_9CHLR id=1247860 bin=RBG9 species=Ktedonobacter racemifer genus=Ktedonobacter taxon_order=Ktedonobacterales taxon_class=Ktedonobacteria phylum=Chloroflexi tax=RBG9 organism_group=Chloroflexi
aerobic-type carbon monoxide dehydrogenase, middle subunit CoxM/CutM-like protein Tax=RBG_16_Gemmatimonadetes_66_8_curated
aerobic-type carbon monoxide dehydrogenase, middle subunit CoxM/CutM-like protein
13_2_20cm_2_scaffold_2887_7
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

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comp(4773..6947)
DNA (2175bp) protein (725aa)
aerobic-type carbon monoxide dehydrogenase, large subunit CoxL/CutL-like protein Tax=RBG_16_Gemmatimonadetes_66_8_curated
pth:PTH_1538 CoxL; aerobic-type carbon monoxide dehydrogenase, large subunit CoxL/CutL homologs id=1247861 bin=RBG9 species=RBG9 genus=RBG9 taxon_order=RBG9 taxon_class=RBG9 phylum=Chloroflexi tax=RBG9 organism_group=Chloroflexi
aerobic-type carbon monoxide dehydrogenase, large subunit CoxL/CutL-like protein
13_2_20cm_2_scaffold_2887_8
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

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comp(6934..7455)
DNA (522bp) protein (174aa)
(2Fe-2S)-binding domain protein n=1 Tax=Ktedonobacter racemifer DSM 44963 RepID=D6U5B6_9CHLR
aerobic-type carbon monoxide dehydrogenase, small subunit CoxS/CutS-like protein Tax=RBG_16_Gemmatimonadetes_66_8_curated
aerobic-type carbon monoxide dehydrogenase, small subunit CoxS/CutS-like protein
13_2_20cm_2_scaffold_2887_9
R_Gemmatimonadetes_71_11, Gemmatimonadetes, Bacteria

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7529..8737
DNA (1209bp) protein (403aa)
dipeptidase; K01273 membrane dipeptidase [EC:3.4.13.19] Tax=RIFCSPLOWO2_02_FULL_Gemmatimonadetes_71_11_curated
membrane dipeptidase (EC:3.4.13.19)
Putative dipeptidase n=1 Tax=Brevundimonas abyssalis TAR-001 RepID=U2YR30_9CAUL
13_2_20cm_2_scaffold_2887_10
RBG_16_Zixibacteria_43_9_curated, Zixibacteria, Bacteria

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9083..10009
DNA (927bp) protein (309aa)
metal dependent phosphohydrolase Tax=RBG_16_Zixibacteria_43_9_curated
metal dependent phosphohydrolase id=24519186 bin=RBG_19FT_COMBO_Aminicenantes_rel_58_17_partial tax=RBG_19FT_COMBO_Aminicenantes_rel_58_17_partial organism_group=OP8 (Aminicenantes) organism_desc=Curation Candidate
HD domain-containing protein
13_2_20cm_2_scaffold_2887_11
GWC2_Gemmatimonadetes_71_10_curated, Gemmatimonadetes, Bacteria

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10230..11600
DNA (1371bp) protein (457aa)
peptidase M16-like protein Tax=GWC2_Gemmatimonadetes_71_10_curated
Peptidase M16-like protein id=3881064 bin=GWF2_Melioribacter_38_21 species=Melioribacter roseus genus=Melioribacter taxon_order=Ignavibacteriales taxon_class=Ignavibacteria phylum=Ignavibacteriae tax=GWF2_Melioribacter_38_21 organism_group=Ignavibacteria
peptidase M16-like protein
13_2_20cm_2_scaffold_2887_12
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

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11597..13087
DNA (1491bp) protein (497aa)
Putative M16B family peptidase n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A9T2_GEMAT
peptidase M16 domain protein
Peptidase M16 domain protein {ECO:0000313|EMBL:AHG88464.1}; TaxID=861299 species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.;"
13_2_20cm_2_scaffold_2887_13
R_Gemmatimonadetes_71_11, Gemmatimonadetes, Bacteria

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comp(13088..14083)
DNA (996bp) protein (332aa)
3-oxoacyl-(acyl-carrier-protein) synthase III (EC:2.3.1.41); K00648 3-oxoacyl-[acyl-carrier-protein] synthase III [EC:2.3.1.180] Tax=RIFCSPLOWO2_02_FULL_Gemmatimonadetes_71_11_curated
3-oxoacyl-(acyl-carrier-protein) synthase III (EC:2.3.1.41)
3-oxoacyl-[acyl-carrier-protein] synthase 3 n=1 Tax=Anaeromyxobacter sp. (strain K) RepID=B4UJV3_ANASK
13_2_20cm_2_scaffold_2887_14
unknown

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14153..14416
DNA (264bp) protein (88aa)

This feature has no annotations

13_2_20cm_2_scaffold_2887_15
GWA2_Ignavibacteria_54_16_curated, Ignavibacteriales, Ignavibacteria, Ignavibacteriae, Bacteria

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14491..16545
DNA (2055bp) protein (685aa)
dipeptidyl aminopeptidase/acylaminoacyl-peptidase Tax=GWA2_Ignavibacteria_54_16_curated
dipeptidyl aminopeptidase/acylaminoacyl-peptidase id=24432021 bin=RBG_19FT_COMBO_Aminicenantes_65_30 tax=RBG_19FT_COMBO_Aminicenantes_65_30 organism_group=OP8 (Aminicenantes) organism_desc=Curation Candidate
peptidase S9, prolyl oligopeptidase active site region
13_2_20cm_2_scaffold_2887_16
unknown

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16545..16931
DNA (387bp) protein (129aa)

This feature has no annotations

13_2_20cm_2_scaffold_2887_17
Rhodothermus marinus, Rhodothermus, Bacteroidetes Order II. Incertae sedis, Bacteroidetes, Bacteria

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comp(17050..18075)
DNA (1026bp) protein (342aa)
Peptidase n=1 Tax=Rhodothermus marinus SG0.5JP17-172 RepID=G2SIK6_RHOMR
peptidase
Peptidase {ECO:0000313|EMBL:AEN72339.1}; Flags: Precursor;; TaxID=762570 species="Bacteria; Bacteroidetes; Bacteroidetes Order II. Incertae sedis; Rhodothermaceae; Rhodothermus.;" source="Rhodothermus
13_2_20cm_2_scaffold_2887_18
unknown

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18424..18588
DNA (165bp) protein (55aa)

This feature has no annotations

13_2_20cm_2_scaffold_2887_19
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

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comp(18903..19787)
DNA (885bp) protein (295aa)
membrane protein n=1 Tax=Desulfovibrio longus RepID=UPI0003B2FD1E
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
hypothetical protein
13_2_20cm_2_scaffold_2887_20
unknown

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comp(19817..20302)
DNA (486bp) protein (162aa)

This feature has no annotations

13_2_20cm_2_scaffold_2887_21
R_Rokubacteria_73_56, Rokubacteria, Bacteria

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comp(20290..21090)
DNA (801bp) protein (267aa)
PhzF family phenazine biosynthesis protein; K06998 Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Phenazine biosynthesis protein PhzF family id=1884744 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Solibacter usitatus genus=Candidatus Solibacter taxon_order=Solibacterales taxon_class=Solibacteres phylum=Acidobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
PhzF family phenazine biosynthesis protein
13_2_20cm_2_scaffold_2887_22
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

Not on your lists

comp(21161..21769)
DNA (609bp) protein (203aa)
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AHG88544.1}; TaxID=861299 species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.;"
13_2_20cm_2_scaffold_2887_23
Symbiobacterium thermophilum, Symbiobacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(21766..22311)
DNA (546bp) protein (182aa)
Putative uncharacterized protein n=1 Tax=Symbiobacterium thermophilum (strain T / IAM 14863) RepID=Q67L49_SYMTH
hypothetical protein
Putative uncharacterized protein {ECO:0000313|EMBL:BAD41597.1}; TaxID=292459 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Symbiobacteriaceae; Symbiobacterium.;" source="Symbiobacterium th
Displaying 23 items

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