ggKbase home page

13_2_20cm_2_scaffold_425

Search features with annotation key words

Displaying 22 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_2_20cm_2_scaffold_425_1
RBG_13_Bathyarchaeota_46_16b_curated, Bathyarchaeota, Archaea

Not on your lists


2..247
DNA (246bp) protein (82aa)
30S ribosomal protein S5p n=2 Tax=Candidatus Nitrososphaera gargensis RepID=K0IEB7_NITGG
30S ribosomal protein S5 Tax=RBG_13_Bathyarchaeota_46_16b_curated
rps5p; 30S ribosomal protein S5p
13_2_20cm_2_scaffold_425_2
Methanothermus fervidus, Methanothermus, Methanobacteriales, Methanobacteria, Euryarchaeota, Archaea

Not on your lists


248..736
DNA (489bp) protein (163aa)
50S ribosomal protein L30P n=1 Tax=Methanothermus fervidus (strain ATCC 43054 / DSM 2088 / JCM 10308 / V24 S) RepID=E3GZE0_METFV
50S ribosomal protein L30
50S ribosomal protein L30P {ECO:0000256|HAMAP-Rule:MF_01371, ECO:0000256|SAAS:SAAS00081760}; TaxID=523846 species="Archaea; Euryarchaeota; Methanobacteria; Methanobacteriales; Methanothermaceae; Metha
13_2_20cm_2_scaffold_425_3
Desulfurococcus fermentans, Desulfurococcus, Desulfurococcales, Thermoprotei, Crenarchaeota, Archaea

Not on your lists

881..1333
DNA (453bp) protein (151aa)
Small heat shock protein HSP20 n=1 Tax=Desulfurococcus fermentans DSM 16532 RepID=I3XSD3_9CREN
small heat shock protein HSP20
Small heat shock protein HSP20 {ECO:0000313|EMBL:AFL66857.1}; TaxID=768672 species="Archaea; Crenarchaeota; Thermoprotei; Desulfurococcales; Desulfurococcaceae; Desulfurococcus.;" source="Desulfurococ
13_2_20cm_2_scaffold_425_4
R_OD1_56_18, Parcubacteria, Bacteria

Not on your lists

comp(2081..2455)
DNA (375bp) protein (125aa)
pterin-4-alpha-carbinolamine dehydratase (EC:4.2.1.96) Tax=RIFCSPHIGHO2_01_FULL_OD1_56_18_curated
phhB; pterin-4-alpha-carbinolamine dehydratase (EC:4.2.1.96); K01724 4a-hydroxytetrahydrobiopterin dehydratase [EC:4.2.1.96] id=5084595 bin=GWA2_OP11_43_14 species=GWA2_OP11 genus=GWA2_OP11 taxon_order=GWA2_OP11 taxon_class=GWA2_OP11 phylum=OP11 tax=GWA2_OP11_43_14 organism_group=OP11 (Microgenomates) organism_desc=GWA2_OP11_2
phhB; pterin-4-alpha-carbinolamine dehydratase
13_2_20cm_2_scaffold_425_5
unknown

Not on your lists

2585..3415
DNA (831bp) protein (277aa)

This feature has no annotations

13_2_20cm_2_scaffold_425_6
Staphylothermus marinus, Staphylothermus, Desulfurococcales, Thermoprotei, Crenarchaeota, Archaea

Not on your lists

3412..4515
DNA (1104bp) protein (368aa)
Glycosyl transferase, group 1 n=1 Tax=Staphylothermus marinus (strain ATCC 43588 / DSM 3639 / F1) RepID=A3DN36_STAMF
group 1 glycosyl transferase
Glycosyl transferase, group 1 {ECO:0000313|EMBL:ABN70046.1}; TaxID=399550 species="Archaea; Crenarchaeota; Thermoprotei; Desulfurococcales; Desulfurococcaceae; Staphylothermus.;" source="Staphylotherm
13_2_20cm_2_scaffold_425_7
unknown

Not on your lists

4585..5283
DNA (699bp) protein (233aa)

This feature has no annotations

13_2_20cm_2_scaffold_425_8
GWF2_Lentisphaerae_50_93_curated, Lentisphaerae, Bacteria

Not on your lists

comp(5404..6378)
DNA (975bp) protein (325aa)
Glycosyltransferase, group 2 family protein id=4420769 bin=GWF2_Lentisphaerae_50_93 species=RBG2 genus=RBG2 taxon_order=RBG2 taxon_class=RBG2 phylum=Chloroflexi tax=GWF2_Lentisphaerae_50_93 organism_group=Lentisphaerae organism_desc=gwf2_scaffold_392 has partial 16S
family 2 glycosyl transferase Tax=GWF2_Lentisphaerae_50_93_curated
sugar transferase
13_2_20cm_2_scaffold_425_9
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6394..7059)
DNA (666bp) protein (222aa)
Methyltransferase FkbM family n=1 Tax=Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601) RepID=F4G480_ALIDK
FkbM family methyltransferase
Methyltransferase FkbM family {ECO:0000313|EMBL:AEB85224.1}; TaxID=596154 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphil
13_2_20cm_2_scaffold_425_10
RLO_RIF_OD1_02_44_15, RIF-OD1-2, Parcubacteria, Bacteria

Not on your lists

7272..8507
DNA (1236bp) protein (412aa)
hypothetical protein n=5 Tax=cellular organisms RepID=UPI00037542C4
methyltransferase Tax=RIFCSPLOWO2_12_FULL_RIF_OD1_02_44_15_curated
C-methyltransferase
13_2_20cm_2_scaffold_425_11
unknown

Not on your lists

8673..8990
DNA (318bp) protein (106aa)

This feature has no annotations

13_2_20cm_2_scaffold_425_12
unknown

Not on your lists

8990..9082
DNA (93bp) protein (31aa)

This feature has no annotations

13_2_20cm_2_scaffold_425_13
Fimbriimonas ginsengisoli, Fimbriimonas, Fimbriimonadales, Fimbriimonadia, Armatimonadetes, Bacteria

Not on your lists

9142..10116
DNA (975bp) protein (325aa)
putative glycosyl transferase
Putative glycosyl transferase {ECO:0000313|EMBL:AIE86958.1}; TaxID=661478 species="Bacteria; Armatimonadetes; Fimbriimonadia; Fimbriimonadales; Fimbriimonadaceae; Fimbriimonas.;" source="Fimbriimonas
glycosyl transferase family 2 id=4232 bin=ACD12 species=ACD12 genus=ACD12 taxon_order=ACD12 taxon_class=ACD12 phylum=OP11 tax=ACD12 organism_group=OP11 (Microgenomates) organism_desc= OP11
13_2_20cm_2_scaffold_425_14
R_OP11_Daviesbacteria_38_18, Daviesbacteria, Microgenomates, Bacteria

Not on your lists

comp(10172..11260)
DNA (1089bp) protein (363aa)
C-methyltransferase n=1 Tax=Crinalium epipsammum PCC 9333 RepID=K9W454_9CYAN id=5087035 bin=GWF1_OP11_31_35_complete species=Crinalium epipsammum genus=Crinalium taxon_order=Oscillatoriales taxon_class=unknown phylum=Cyanobacteria tax=GWF1_OP11_31_35_complete organism_group=OP11 (Microgenomates) organism_desc=Complete genome (was OP11_1)
C-methyltransferase Tax=RIFCSPLOWO2_02_FULL_OP11_Daviesbacteria_38_18_curated
C-methyltransferase
13_2_20cm_2_scaffold_425_15

Not on your lists

11486..11977
DNA (492bp) protein (164aa)
Putative dTDP-4-dehydrorhamnose 3,5-epimerase n=1 Tax=uncultured archaeon RepID=I3RKT2_9ARCH
Putative dTDP-4-dehydrorhamnose 3,5-epimerase {ECO:0000313|EMBL:AFK24942.1}; TaxID=115547 species="Archaea; environmental samples.;" source="uncultured archaeon.;"
dTDP-4-dehydrorhamnose 3 5-epimerase-like protein
13_2_20cm_2_scaffold_425_16
Methanobacterium paludis, Methanobacterium, Methanobacteriales, Methanobacteria, Euryarchaeota, Archaea

Not on your lists

comp(11999..12862)
DNA (864bp) protein (288aa)
dTDP-4-dehydrorhamnose reductase (EC:1.1.1.133)
dTDP-4-dehydrorhamnose reductase {ECO:0000313|EMBL:AEG17590.1}; EC=1.1.1.133 {ECO:0000313|EMBL:AEG17590.1};; TaxID=868131 species="Archaea; Euryarchaeota; Methanobacteria; Methanobacteriales; Methanob
dTDP-4-dehydrorhamnose reductase n=1 Tax=Methanobacterium sp. (strain SWAN-1) RepID=F6D555_METSW
13_2_20cm_2_scaffold_425_17
Thermococcus onnurineus, Thermococcus, Thermococcales, Thermococci, Euryarchaeota, Archaea

Not on your lists

13086..14015
DNA (930bp) protein (310aa)
RfbB dTDP-glucose 4,6-dehydratase n=1 Tax=Thermococcus onnurineus (strain NA1) RepID=B6YVK9_THEON
rfbB dTDP-glucose 4,6-dehydratase
RfbB dTDP-glucose 4,6-dehydratase {ECO:0000313|EMBL:ACJ17333.1}; TaxID=523850 species="Archaea; Euryarchaeota; Thermococci; Thermococcales; Thermococcaceae; Thermococcus.;" source="Thermococcus onnuri
13_2_20cm_2_scaffold_425_18
Marine Group I thaumarchaeote SCGC RSA3, Thaumarchaeota, Archaea

Not on your lists

comp(14041..14556)
DNA (516bp) protein (172aa)
Uncharacterized protein n=1 Tax=Candidatus Nitrosopumilus sp. AR2 RepID=K0B8T7_9ARCH
Uncharacterized protein {ECO:0000313|EMBL:KFM19932.1}; TaxID=1503183 species="Archaea; Thaumarchaeota; unclassified Thaumarchaeota; Marine Group I.;" source="Marine Group I thaumarchaeote SCGC RSA3.;"
hypothetical protein
13_2_20cm_2_scaffold_425_19
unknown

Not on your lists

14651..14998
DNA (348bp) protein (116aa)

This feature has no annotations

13_2_20cm_2_scaffold_425_20
unknown

Not on your lists

15437..16171
DNA (735bp) protein (245aa)

This feature has no annotations

13_2_20cm_2_scaffold_425_21
RBG_13_Bathyarchaeota_38_9_curated, Bathyarchaeota, Archaea

Not on your lists

comp(16210..17205)
DNA (996bp) protein (332aa)
glucose-1-phosphate thymidyltransferase (EC:2.7.7.24); K00973 glucose-1-phosphate thymidylyltransferase [EC:2.7.7.24] Tax=RBG_13_Bathyarchaeota_38_9_curated
glucose-1-phosphate thymidyltransferase (EC:2.7.7.24)
Glucose-1-phosphate thymidyltransferase n=1 Tax=Methanobacterium sp. (strain SWAN-1) RepID=F6D556_METSW
13_2_20cm_2_scaffold_425_22
unknown

Not on your lists

comp(17392..18231)
DNA (840bp) protein (280aa)

This feature has no annotations

Displaying 22 items

View Taxonomy