ggKbase home page

13_2_20cm_2_scaffold_4690

Search features with annotation key words

Displaying 26 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_2_20cm_2_scaffold_4690_1
RLO_RIF_CHLX_71_12, Chloroflexi, Bacteria

Not on your lists

1..1992
DNA (1992bp) protein (664aa)
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_RIF_CHLX_71_12_curated
hypothetical protein id=14627863 bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin7_NC10_sister organism_group=NC10
hypothetical protein
13_2_20cm_2_scaffold_4690_2
unknown

Not on your lists

comp(2074..2610)
DNA (537bp) protein (179aa)

This feature has no annotations

13_2_20cm_2_scaffold_4690_3
Chthonomonas calidirosea, Chthonomonas, Chthonomonadales, Chthonomonadetes, Armatimonadetes, Bacteria

Not on your lists

comp(2711..3955)
DNA (1245bp) protein (415aa)
MFS/sugar transport protein n=1 Tax=Chthonomonas calidirosea T49 RepID=S0EX92_9BACT
MFS/sugar transport protein
MFS/sugar transport protein {ECO:0000313|EMBL:CCW34911.1}; TaxID=1303518 species="Bacteria; Armatimonadetes; Chthonomonadetes; Chthonomonadales; Chthonomonadaceae; Chthonomonas.;" source="Chthonomonas
13_2_20cm_2_scaffold_4690_4
RLO_RIF_CHLX_71_12, Chloroflexi, Bacteria

Not on your lists

4063..5169
DNA (1107bp) protein (369aa)
hypothetical protein; K09760 DNA recombination protein RmuC Tax=RIFCSPLOWO2_12_FULL_RIF_CHLX_71_12_curated
Putative DNA recombination protein id=4226599 bin=GWF2_Methylomirabilis_70_14 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=TA06 tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein
13_2_20cm_2_scaffold_4690_5
RLO_RIF_CHLX_71_12, Chloroflexi, Bacteria

Not on your lists

5214..5546
DNA (333bp) protein (111aa)
Tax=RIFCSPLOWO2_12_FULL_RIF_CHLX_71_12_curated
13_2_20cm_2_scaffold_4690_6
RLO_RIF_CHLX_71_12, Chloroflexi, Bacteria

Not on your lists

5604..6731
DNA (1128bp) protein (376aa)
Peptidase M20 domain-containing protein 2 (Aminoacylase 1-like protein 2) n=1 Tax=Candidatus Methylomirabilis oxyfera RepID=D5MFI7_9BACT
amidohydrolase Tax=RIFCSPLOWO2_12_FULL_RIF_CHLX_71_12_curated
Pm20d; peptidase M20 domain-containing protein 2 (Aminoacylase 1-like protein 2)
13_2_20cm_2_scaffold_4690_7
RBG_16_RIF_CHLX_69_14_curated, RIF-CHLX, Bacteria

Not on your lists

6804..7388
DNA (585bp) protein (195aa)
hypothetical protein n=1 Tax=Thermus oshimai RepID=UPI0003706C80
hypothetical protein
type 11 methyltransferase Tax=RBG_16_RIF_CHLX_69_14_curated
13_2_20cm_2_scaffold_4690_8
RLO_RIF_CHLX_71_12, Chloroflexi, Bacteria

Not on your lists

7385..8968
DNA (1584bp) protein (528aa)
N-acyl-D-amino-acid deacylase (EC:3.5.1.81); K06015 N-acyl-D-amino-acid deacylase [EC:3.5.1.81] Tax=RIFCSPLOWO2_12_FULL_RIF_CHLX_71_12_curated
N-acyl-D-amino-acid deacylase (EC:3.5.1.81)
N-acyl-D-amino-acid deacylase n=1 Tax=Thermotoga thermarum DSM 5069 RepID=F7YTU2_9THEM rbh
13_2_20cm_2_scaffold_4690_9
RLO_RIF_CHLX_71_12, Chloroflexi, Bacteria

Not on your lists

8965..10026
DNA (1062bp) protein (354aa)
Uncharacterized protein n=2 Tax=Burkholderia RepID=A4JNN9_BURVG id=5225348 bin=16ft_combo_ws3_JS1 species=unknown genus=Burkholderia taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_RIF_CHLX_71_12_curated
protein of unknown function DUF1611
13_2_20cm_2_scaffold_4690_10
unknown

Not on your lists

comp(9843..10499)
DNA (657bp) protein (219aa)

This feature has no annotations

13_2_20cm_2_scaffold_4690_11
RLO_RIF_CHLX_71_12, Chloroflexi, Bacteria

Not on your lists

10894..11610
DNA (717bp) protein (239aa)
membrane protein n=1 Tax=Arthrobacter sp. PAO19 RepID=UPI0003B41854
Integral membrane protein TIGR01906 Tax=RIFCSPLOWO2_12_FULL_RIF_CHLX_71_12_curated
hypothetical protein
13_2_20cm_2_scaffold_4690_12
GWC2_RIF_CHLX_73_18_curated, RIF-CHLX, Bacteria

Not on your lists

11607..12710
DNA (1104bp) protein (368aa)
response regulator receiver protein; K02282 pilus assembly protein CpaE Tax=GWC2_RIF_CHLX_73_18_curated
Response regulator receiver protein id=3810776 bin=GWC2_Chloroflexi_73_18 species=Acetohalobium arabaticum genus=Acetohalobium taxon_order=Halanaerobiales taxon_class=Clostridia phylum=Firmicutes tax=GWC2_Chloroflexi_73_18 organism_group=Chloroflexi organism_desc=Good +
response regulator receiver protein
13_2_20cm_2_scaffold_4690_13
RLO_RIF_CHLX_71_12, Chloroflexi, Bacteria

Not on your lists

12718..13542
DNA (825bp) protein (275aa)
glutamate racemase (EC:5.1.1.3)
Glutamate racemase n=1 Tax=Desulfotomaculum kuznetsovii (strain DSM 6115 / VKM B-1805 / 17) RepID=F6CP58_DESK7
glutamate racemase Tax=RIFCSPLOWO2_12_FULL_RIF_CHLX_71_12_curated
13_2_20cm_2_scaffold_4690_14
RLO_RIF_CHLX_71_12, Chloroflexi, Bacteria

Not on your lists

13539..14474
DNA (936bp) protein (312aa)
Ribosome-binding ATPase YchF n=1 Tax=Thermomicrobium roseum (strain ATCC 27502 / DSM 5159 / P-2) RepID=B9L188_THERP
GTP-dependent nucleic acid-binding protein EngD; K06942 Tax=RIFCSPLOWO2_12_FULL_RIF_CHLX_71_12_curated
ychF; GTP-dependent nucleic acid-binding protein EngD
13_2_20cm_2_scaffold_4690_15
RLO_RIF_CHLX_71_12, Chloroflexi, Bacteria

Not on your lists

14511..14843
DNA (333bp) protein (111aa)
PfkB domain-containing protein Tax=RIFCSPLOWO2_12_FULL_RIF_CHLX_71_12_curated
13_2_20cm_2_scaffold_4690_16
unknown

Not on your lists

comp(15120..15350)
DNA (231bp) protein (77aa)

This feature has no annotations

13_2_20cm_2_scaffold_4690_17
unknown

Not on your lists

comp(15347..15496)
DNA (150bp) protein (50aa)

This feature has no annotations

13_2_20cm_2_scaffold_4690_18
unknown

Not on your lists

comp(15493..15771)
DNA (279bp) protein (93aa)

This feature has no annotations

13_2_20cm_2_scaffold_4690_19
RLO_RIF_CHLX_71_12, Chloroflexi, Bacteria

Not on your lists

comp(15803..16543)
DNA (741bp) protein (247aa)
Putative transporter substrate-binding protein n=1 Tax=Nocardia cyriacigeorgica (strain GUH-2) RepID=H6R648_NOCCG
family 3 extracellular solute-binding protein; K10005 glutamate transport system substrate-binding protein Tax=RIFCSPLOWO2_12_FULL_RIF_CHLX_71_12_curated
putative transporter substrate-binding protein
13_2_20cm_2_scaffold_4690_20
RLO_RIF_CHLX_71_12, Chloroflexi, Bacteria

Not on your lists

16734..17540
DNA (807bp) protein (269aa)
Beta-lactamase (EC:3.5.2.6) Tax=RIFCSPLOWO2_12_FULL_RIF_CHLX_71_12_curated
hypothetical protein n=1 Tax=Spirosoma spitsbergense RepID=UPI00036881EB
beta-lactamase
13_2_20cm_2_scaffold_4690_21
RLO_RIF_CHLX_71_12, Chloroflexi, Bacteria

Not on your lists

17599..17934
DNA (336bp) protein (112aa)
Tax=RIFCSPLOWO2_12_FULL_RIF_CHLX_71_12_curated
13_2_20cm_2_scaffold_4690_22
unknown

Not on your lists

comp(17825..18613)
DNA (789bp) protein (263aa)

This feature has no annotations

13_2_20cm_2_scaffold_4690_trna_1
unknown

Not on your lists

17949..18020
DNA (72bp)
transferRNA
13_2_20cm_2_scaffold_4690_trna_2
unknown

Not on your lists

18614..18686
DNA (73bp)
transferRNA
13_2_20cm_2_scaffold_4690_23
S_OP1_64_32, KB1, Bacteria

Not on your lists

18702..19949
DNA (1248bp) protein (416aa)
ATPase; tRNA(Ile)-lysidine synthase (EC:6.3.4.-) id=14430107 bin=bin3_NC10 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin3_NC10 organism_group=NC10
tRNA(Ile)-lysidine synthase Tax=S_OP1_64_32
tRNA(Ile)-lysidine synthetase
13_2_20cm_2_scaffold_4690_24
RLO_RIF_CHLX_71_12, Chloroflexi, Bacteria

Not on your lists

20003..20620
DNA (618bp) protein (206aa)
ATP-dependent metalloprotease FtsH (EC:3.6.4.3); K03798 cell division protease FtsH [EC:3.4.24.-] Tax=RIFCSPLOWO2_12_FULL_RIF_CHLX_71_12_curated
ATP-dependent metalloprotease FtsH (EC:3.6.4.3)
ATP-dependent zinc metalloprotease FtsH n=1 Tax=Thermobaculum terrenum (strain ATCC BAA-798 / YNP1) RepID=D1CGB2_THET1
Displaying 26 items

View Taxonomy