ggKbase home page

13_2_20cm_2_scaffold_5022

Search features with annotation key words

Displaying 25 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_2_20cm_2_scaffold_5022_1
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(1..1134)
DNA (1134bp) protein (378aa)
class III aminotransferase; K01845 glutamate-1-semialdehyde 2,1-aminomutase [EC:5.4.3.8] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
class III aminotransferase; K01845 glutamate-1-semialdehyde 2,1-aminomutase [EC:5.4.3.8] id=14628094 bin=bin7_NC10_sister species=Sphaerobacter thermophilus genus=Sphaerobacter taxon_order=Sphaerobacterales taxon_class=Thermomicrobia phylum=Chloroflexi tax=bin7_NC10_sister organism_group=NC10
class III aminotransferase
13_2_20cm_2_scaffold_5022_2
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(1131..2066)
DNA (936bp) protein (312aa)
urea amidolyase-like protein (EC:6.3.4.6)
putative regulatory protein Tax=GWA2_Rokubacteria_73_35_curated
Allophanate hydrolase subunit 2 id=4669076 bin=GWF2_Methylomirabilis_70_14 species=Clostridium sp. MSTE9 genus=Clostridium taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_2_20cm_2_scaffold_5022_3
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(2063..2779)
DNA (717bp) protein (239aa)
TIGR00370 family protein id=4213628 bin=GWA2_Methylomirabilis_73_35 species=Thermaerobacter subterraneus genus=Thermaerobacter taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
putative regulatory protein Tax=GWA2_Rokubacteria_73_35_curated
putative regulatory protein
13_2_20cm_2_scaffold_5022_4
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(2776..3138)
DNA (363bp) protein (121aa)
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Uncharacterized protein id=4213630 bin=GWA2_Methylomirabilis_73_35 species=Thermaerobacter subterraneus genus=Thermaerobacter taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein
13_2_20cm_2_scaffold_5022_5
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(3457..4446)
DNA (990bp) protein (330aa)
D-3-phosphoglycerate dehydrogenase (EC:1.1.1.95); K00058 D-3-phosphoglycerate dehydrogenase [EC:1.1.1.95] Tax=GWA2_Rokubacteria_73_35_curated
D-3-phosphoglycerate dehydrogenase (EC:1.1.1.95)
D-3-phosphoglycerate dehydrogenase id=4213632 bin=GWA2_Methylomirabilis_73_35 species=Thermaerobacter subterraneus genus=Thermaerobacter taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis rbh
13_2_20cm_2_scaffold_5022_6
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(4481..5245)
DNA (765bp) protein (255aa)
putative methyltransferase type 11 Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Methyltransferase id=4213634 bin=GWA2_Methylomirabilis_73_35 species=uncultured candidate division OP1 bacterium genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis rbh
putative methyltransferase
13_2_20cm_2_scaffold_5022_7
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

5810..6265
DNA (456bp) protein (152aa)
NAD-dependent epimerase/dehydratase Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
NAD-dependent epimerase/dehydratase id=4213636 bin=GWA2_Methylomirabilis_73_35 species=Gemmata obscuriglobus genus=Gemmata taxon_order=Planctomycetales taxon_class=Planctomycetia phylum=Planctomycetes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
nucleoside-diphosphate-sugar epimerase
13_2_20cm_2_scaffold_5022_8
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

Not on your lists

6246..6998
DNA (753bp) protein (251aa)
N-acetyltransferase GCN5; K03823 phosphinothricin acetyltransferase [EC:2.3.1.183] Tax=GWA2_Rokubacteria_70_23_curated
Uncharacterized protein id=4669070 bin=GWF2_Methylomirabilis_70_14 species=Bacillus bataviensis genus=Bacillus taxon_order=Bacillales taxon_class=Bacilli phylum=Firmicutes tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
N-acetyltransferase GCN5
13_2_20cm_2_scaffold_5022_9
R_Rokubacteria_68_19, Rokubacteria, Bacteria

Not on your lists

comp(7011..8243)
DNA (1233bp) protein (411aa)
Extracellular ligand-binding receptor Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_68_19_curated
Extracellular ligand-binding receptor id=4827657 bin=GWA2_Methylomirabilis_73_35 species=beta proteobacterium CB genus=unknown taxon_order=unknown taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
Extracellular ligand-binding receptor
13_2_20cm_2_scaffold_5022_10
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(8246..9169)
DNA (924bp) protein (308aa)
Peptidase M24 n=1 Tax=Nakamurella multipartita (strain ATCC 700099 / DSM 44233 / JCM 9543 / Y-104) RepID=C8XIB9_NAKMY
peptidase M24 Tax=GWA2_Rokubacteria_73_35_curated
peptidase M24
13_2_20cm_2_scaffold_5022_11
CSP1_6_Rokubacteria, Rokubacteria, Bacteria

Not on your lists

9568..10011
DNA (444bp) protein (148aa)
signal-transduction protein with CBS domains id=14626376 bin=bin7_NC10_sister species=Melioribacter roseus genus=Melioribacter taxon_order=Ignavibacteriales taxon_class=Ignavibacteria phylum=Ignavibacteriae tax=bin7_NC10_sister organism_group=NC10
signal-transduction protein with CBS domains Tax=CSP1_6_Rokubacteria
signal-transduction protein with CBS domains
13_2_20cm_2_scaffold_5022_12
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(10159..11817)
DNA (1659bp) protein (553aa)
EmrB/QacA family drug resistance transporter; K03446 MFS transporter, DHA2 family, multidrug resistance protein B Tax=GWA2_Rokubacteria_73_35_curated
Drug resistance transporter, EmrB/QacA subfamily id=4748857 bin=GWC2_Methylomirabilis_70_16 species=Geobacter metallireducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10 rbh
DSBA oxidoreductase
13_2_20cm_2_scaffold_5022_13
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(11814..13067)
DNA (1254bp) protein (418aa)
Secretion protein HlyD family protein id=4213646 bin=GWA2_Methylomirabilis_73_35 species=Microcoleus sp. PCC 7113 genus=Microcoleus taxon_order=Oscillatoriales taxon_class=unknown phylum=Cyanobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
multidrug resistance efflux pump Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
multidrug resistance efflux pump
13_2_20cm_2_scaffold_5022_14
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(13110..14363)
DNA (1254bp) protein (418aa)
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Putative uncharacterized protein id=2868867 bin=GWC2_Methylomirabilis_70_24 species=Pirellula staleyi genus=Pirellula taxon_order=Planctomycetales taxon_class=Planctomycetia phylum=Planctomycetes tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
hypothetical protein
13_2_20cm_2_scaffold_5022_15
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

14463..15224
DNA (762bp) protein (254aa)
comL; Competence lipoprotein ComL, putative; K05807 putative lipoprotein Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
hypothetical protein; K05807 putative lipoprotein id=14627446 bin=bin7_NC10_sister species=Thalassiobium sp. R2A62 genus=Thalassobium taxon_order=Rhodobacterales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=bin7_NC10_sister organism_group=NC10
transporter
13_2_20cm_2_scaffold_5022_16
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

15241..15678
DNA (438bp) protein (146aa)
threonine aldolase; K01620 threonine aldolase [EC:4.1.2.5] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
threonine aldolase; K01620 threonine aldolase [EC:4.1.2.5] id=14627445 bin=bin7_NC10_sister species=Symbiobacterium thermophilum genus=Symbiobacterium taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=bin7_NC10_sister organism_group=NC10
glyA1; serine hydroxymethyltransferase (EC:2.1.2.1)
13_2_20cm_2_scaffold_5022_17
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

15675..16148
DNA (474bp) protein (158aa)
threonine aldolase; K01620 threonine aldolase [EC:4.1.2.5] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Threonine aldolase id=4656174 bin=GWF2_Methylomirabilis_70_14 species=Symbiobacterium thermophilum genus=Symbiobacterium taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
threonine aldolase
13_2_20cm_2_scaffold_5022_18
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

16338..17315
DNA (978bp) protein (326aa)
oppD; peptide ABC transporter ATP-binding protein (EC:3.6.3.24); K02031 peptide/nickel transport system ATP-binding protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Peptide ABC transporter ATP-binding protein id=3311241 bin=GWC2_Methylomirabilis_70_16 species=alpha proteobacterium BAL199 genus=unknown taxon_order=unknown taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
peptide ABC transporter ATP-binding protein
13_2_20cm_2_scaffold_5022_19
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

17324..18310
DNA (987bp) protein (329aa)
oppF; oligopeptide ABC transporter ATP-binding protein (EC:3.6.3.27); K02032 peptide/nickel transport system ATP-binding protein Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
peptide ABC transporter ATP-binding protein; K02032 peptide/nickel transport system ATP-binding protein id=14627442 bin=bin7_NC10_sister species=Oceanibaculum indicum genus=Oceanibaculum taxon_order=Rhodospirillales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=bin7_NC10_sister organism_group=NC10
peptide ABC transporter ATP-binding protein
13_2_20cm_2_scaffold_5022_20
unknown

Not on your lists

18657..19343
DNA (687bp) protein (229aa)

This feature has no annotations

13_2_20cm_2_scaffold_5022_21
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists

19672..20727
DNA (1056bp) protein (352aa)
class I/II aminotransferase; K14261 alanine-synthesizing transaminase [EC:2.6.1.-] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
PLP-dependent aminotransferase, putative aspartate aminotransferase (EC:2.6.1.- 2.6.1.1) id=14627617 bin=bin7_NC10_sister species=Thioalkalivibrio sp. ALSr1 genus=Thioalkalivibrio taxon_order=Chromatiales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=bin7_NC10_sister organism_group=NC10
class I/II aminotransferase
13_2_20cm_2_scaffold_5022_22
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists

20773..22077
DNA (1305bp) protein (435aa)
hom; homoserine dehydrogenase (EC:1.1.1.3) Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
homoserine dehydrogenase (HDH): ThrA, MetL (EC:1.1.1.3); K00003 homoserine dehydrogenase [EC:1.1.1.3] id=14627618 bin=bin7_NC10_sister species=Thermodesulfovibrio yellowstonii genus=Thermodesulfovibrio taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=bin7_NC10_sister organism_group=NC10 rbh
hom; homoserine dehydrogenase (EC:1.1.1.3)
13_2_20cm_2_scaffold_5022_23
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

22074..23027
DNA (954bp) protein (318aa)
thrC_2; threonine synthase (EC:4.2.3.1); K01733 threonine synthase [EC:4.2.3.1] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
thrC_2; threonine synthase (EC:4.2.3.1)
Threonine synthase id=2513750 bin=GWC2_Methylomirabilis_70_24 species=Persephonella marina genus=Persephonella taxon_order=Aquificales taxon_class=Aquificae phylum=Aquificae tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
13_2_20cm_2_scaffold_5022_24
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

23264..23902
DNA (639bp) protein (213aa)
hypothetical protein; K07027 Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Putative uncharacterized protein id=2513752 bin=GWC2_Methylomirabilis_70_24 species=Oscillochloris trichoides genus=Oscillochloris taxon_order=Chloroflexales taxon_class=Chloroflexi phylum=Chloroflexi tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
13_2_20cm_2_scaffold_5022_25
R_Rokubacteria_69_13, Rokubacteria, Bacteria

Not on your lists

24146..24823
DNA (678bp) protein (226aa)
lysC; aspartokinase (EC:2.7.2.4) Tax=RIFCSPHIGHO2_02_FULL_Rokubacteria_69_13_curated
aspartate kinase (EC:2.7.2.4)
Aspartokinase id=4231243 bin=GWA2_Methylomirabilis_73_35 species=Mahella australiensis genus=Mahella taxon_order=Thermoanaerobacterales taxon_class=Clostridia phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
Displaying 25 items

View Taxonomy