ggKbase home page

13_2_20cm_2_scaffold_539

Search features with annotation key words

Displaying items 1-30 of 53 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_2_20cm_2_scaffold_539_1
Candidatus Caldiarchaeum subterraneum, Candidatus Caldiarchaeum, Thaumarchaeota, Archaea

Not on your lists

comp(2..1858)
DNA (1857bp) protein (619aa)
inorganic pyrophosphatase (EC:3.6.1.1)
K(+)-insensitive pyrophosphate-energized proton pump {ECO:0000256|HAMAP-Rule:MF_01129}; EC=3.6.1.1 {ECO:0000256|HAMAP-Rule:MF_01129};; Membrane-bound proton-translocating pyrophosphatase {ECO:0000256|
K(+)-insensitive pyrophosphate-energized proton pump n=1 Tax=Candidatus Caldiarchaeum subterraneum RepID=E6N534_9ARCH
13_2_20cm_2_scaffold_539_2
RBG_16_Archaea_50_20_curated, Archaea

Not on your lists

2016..3194
DNA (1179bp) protein (393aa)
2,3-di-O-geranylgeranylglyceryl phosphate reductase (EC:1.3.99.-)
2,3-di-O-geranylgeranylglyceryl phosphate reductase n=1 Tax=Methanohalophilus mahii (strain ATCC 35705 / DSM 5219 / SLP) RepID=D5EC61_METMS
geranylgeranyl reductase Tax=RBG_16_Archaea_50_20_curated
13_2_20cm_2_scaffold_539_3
RBG_16_Archaea_50_20_curated, Archaea

Not on your lists

comp(3191..3958)
DNA (768bp) protein (256aa)
protoheme IX farnesyltransferase; K02301 protoheme IX farnesyltransferase [EC:2.5.1.-] Tax=RBG_16_Archaea_50_20_curated
ctaB-2; protoheme IX farnesyltransferase (EC:2.5.1.-)
Protoheme IX farnesyltransferase n=1 Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0IBY9_NITGG
13_2_20cm_2_scaffold_539_4
unknown

Not on your lists

comp(4122..4721)
DNA (600bp) protein (200aa)

This feature has no annotations

13_2_20cm_2_scaffold_539_5
RBG_16_Archaea_50_20_curated, Archaea

Not on your lists

comp(4724..6034)
DNA (1311bp) protein (437aa)
cytochrome b/b6 domain-containing protein Tax=RBG_16_Archaea_50_20_curated
cytochrome b/b6 domain-containing protein id=14427232 bin=bin2_Thaum species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Thaumarchaeota tax=bin2_Thaum organism_group=Archaeon
cytochrome B(C-terminal)/b6/PetD
13_2_20cm_2_scaffold_539_6
unknown

Not on your lists

comp(6003..6728)
DNA (726bp) protein (242aa)

This feature has no annotations

13_2_20cm_2_scaffold_539_7
Nitrososphaera viennensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

Not on your lists

comp(6808..7539)
DNA (732bp) protein (244aa)
Putative transposase, IS605 OrfB family n=1 Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0IFZ7_NITGG
putative transposase IS605 OrfB family
Putative transposase IS605 OrfB family {ECO:0000313|EMBL:AIC15978.1}; TaxID=926571 species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="N
13_2_20cm_2_scaffold_539_8
RBG_16_Archaea_50_20_curated, Archaea

Not on your lists

7936..8940
DNA (1005bp) protein (335aa)
hypothetical protein n=1 Tax=crenarchaeote SCGC AAA261-N13 RepID=UPI00037FF3A0
4Fe4S ferredoxin iron-sulfur binding domain containing protein Tax=RBG_16_Archaea_50_20_curated
hypothetical protein
13_2_20cm_2_scaffold_539_9
RBG_13_Bathyarchaeota_46_16b_curated, Bathyarchaeota, Archaea

Not on your lists

8992..10044
DNA (1053bp) protein (351aa)
hypothetical protein n=1 Tax=candidate division YNPFFA RepID=UPI00037F821B
UBA/THIF-type NAD/FAD binding protein; K11996 adenylyltransferase and sulfurtransferase Tax=RBG_13_Bathyarchaeota_46_16b_curated
moeB; UBA/THIF-type NAD/FAD binding protein
13_2_20cm_2_scaffold_539_10
unknown

Not on your lists

10099..10704
DNA (606bp) protein (202aa)

This feature has no annotations

13_2_20cm_2_scaffold_539_11
RBG_16_Archaea_50_20_curated, Archaea

Not on your lists

comp(10675..11847)
DNA (1173bp) protein (391aa)
NADH-ubiquinone oxidoreductase subunit N (EC:1.6.5.3); K00343 NADH-quinone oxidoreductase subunit N [EC:1.6.5.3] Tax=RBG_16_Archaea_50_20_curated
nuoN; NADH-quinone oxidoreductase subunit N (EC:1.6.99.5)
NADH-quinone oxidoreductase subunit N n=1 Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0IIZ0_NITGG
13_2_20cm_2_scaffold_539_12
RBG_16_Archaea_50_20_curated, Archaea

Not on your lists

comp(12130..13566)
DNA (1437bp) protein (479aa)
nuoM; proton-translocating NAD(P)H-quinone oxidoreductase, chain M; K00342 NADH-quinone oxidoreductase subunit M [EC:1.6.5.3] Tax=RBG_16_Archaea_50_20_curated
Proton-translocating NAD(P)H-quinone oxidoreductase, chain M id=3984446 bin=GWF2_OP3_43_52 species=unknown genus=Acaryochloris taxon_order=Chroococcales taxon_class=unknown phylum=Cyanobacteria tax=GWF2_OP3_43_52 organism_group=OP3 (Omnitrophica) organism_desc=Same as C2_44_8
NADH-ubiquinone oxidoreductase chain M
13_2_20cm_2_scaffold_539_13

Not on your lists

comp(13611..15488)
DNA (1878bp) protein (626aa)
NADH-ubiquinone oxidoreductase subunit L (NuoL) {ECO:0000313|EMBL:AIF12403.1}; EC=1.6.5.3 {ECO:0000313|EMBL:AIF12403.1};; TaxID=1456198 species="Archaea; Thaumarchaeota; environmental samples.;" sourc
nuoL; NADH-quinone oxidoreductase subunit L (EC:1.6.99.5)
proton-translocating NADH-quinone oxidoreductase subunit L id=14427488 bin=bin2_Thaum species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Thaumarchaeota tax=bin2_Thaum organism_group=Archaeon
13_2_20cm_2_scaffold_539_14
RBG_16_Thaumarchaeota_49_8_curated, Thaumarchaeota, TACK, Archaea

Not on your lists

comp(15699..17204)
DNA (1506bp) protein (502aa)
formate hydrogenlyase subunit 3/Multisubunit Na/H antiporter (EC:1.6.5.3)
Proton-translocating NADH-quinone oxidoreductase, chain M n=1 Tax=Thaumarchaeota archaeon N4 RepID=V6AUP1_9ARCH
proton-translocating NADH-quinone oxidoreductase subunit M Tax=RBG_16_Thaumarchaeota_49_8_curated
13_2_20cm_2_scaffold_539_15
RBG_16_Archaea_50_20_curated, Archaea

Not on your lists

comp(17212..17520)
DNA (309bp) protein (103aa)
NADH-ubiquinone oxidoreductase subunit 4L; K00340 NADH-quinone oxidoreductase subunit K [EC:1.6.5.3] id=14427491 bin=bin2_Thaum species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Thaumarchaeota tax=bin2_Thaum organism_group=Archaeon
NADH-ubiquinone oxidoreductase subunit 4L Tax=RBG_16_Archaea_50_20_curated
NADH-ubiquinone oxidoreductase subunit 4L
13_2_20cm_2_scaffold_539_16
RBG_16_Archaea_50_20_curated, Archaea

Not on your lists

comp(17525..18019)
DNA (495bp) protein (165aa)
nuoJ; NADH-quinone oxidoreductase subunit J (EC:1.6.99.5) Tax=RBG_16_Archaea_50_20_curated
nuoJ; NADH-quinone oxidoreductase subunit J (EC:1.6.99.5)
NADH-quinone oxidoreductase subunit J n=1 Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0IGX3_NITGG
13_2_20cm_2_scaffold_539_17
RBG_16_Archaea_50_20_curated, Archaea

Not on your lists

comp(18026..19027)
DNA (1002bp) protein (334aa)
nuoH; NADH-quinone oxidoreductase subunit H (EC:1.6.99.5) Tax=RBG_16_Archaea_50_20_curated
nuoH; NADH-quinone oxidoreductase subunit H (EC:1.6.99.5)
NADH-quinone oxidoreductase subunit H n=1 Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0I9U2_NITGG
13_2_20cm_2_scaffold_539_18
RBG_16_Archaea_50_20_curated, Archaea

Not on your lists

comp(19487..20419)
DNA (933bp) protein (311aa)
geranylgeranylglyceryl diphosphate synthase (EC:2.5.1.10 2.5.1.1 2.5.1.29); K13787 geranylgeranyl diphosphate synthase, type I [EC:2.5.1.1 2.5.1.10 2.5.1.29] Tax=RBG_16_Archaea_50_20_curated
geranylgeranylglyceryl diphosphate synthase (EC:2.5.1.10 2.5.1.1 2.5.1.29)
Geranylgeranyl-diphosphate synthase farnesyl-diphosphate synthase n=1 Tax=Methanothermus fervidus (strain ATCC 43054 / DSM 2088 / JCM 10308 / V24 S) RepID=E3GZG5_METFV
13_2_20cm_2_scaffold_539_19
unknown

Not on your lists

20447..20956
DNA (510bp) protein (170aa)

This feature has no annotations

13_2_20cm_2_scaffold_539_20
Thaumarchaeota archaeon N4, Thaumarchaeota, Archaea

Not on your lists

comp(21083..21964)
DNA (882bp) protein (294aa)
Uncharacterized protein n=1 Tax=Thaumarchaeota archaeon N4 RepID=V6AS31_9ARCH
Uncharacterized protein {ECO:0000313|EMBL:CDI05531.1}; TaxID=1407055 species="Archaea; Thaumarchaeota; unclassified Thaumarchaeota.;" source="Thaumarchaeota archaeon N4.;"
hypothetical protein
13_2_20cm_2_scaffold_539_21
Desulfovibrio desulfuricans, Desulfovibrio, Desulfovibrionales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22027..22302)
DNA (276bp) protein (92aa)
Caa(3)-type oxidase, subunit IV {ECO:0000313|EMBL:EGB16246.1}; TaxID=641491 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfovibrionales; Desulfovibrionaceae; Desulfovibrio.;" source="De
13_2_20cm_2_scaffold_539_22
Halogranum salarium, Halogranum, Haloferacales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

comp(22305..24737)
DNA (2433bp) protein (811aa)
hypothetical protein n=1 Tax=Aigarchaeota archaeon JGI 0000001-H6 RepID=UPI000370EEDD
Heme/copper-type cytochrome/quinol oxidase, subunit 1 {ECO:0000313|EMBL:EJN58781.1}; TaxID=1210908 species="Archaea; Euryarchaeota; Halobacteria; Haloferacales; Haloferacaceae.;" source="Halogranum sa
heme/copper-type cytochrome/quinol oxidase subunit 1
13_2_20cm_2_scaffold_539_23
Halogranum salarium, Halogranum, Haloferacales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

comp(24750..25703)
DNA (954bp) protein (318aa)
Cytochrome c oxidase subunit II n=1 Tax=Halogranum salarium B-1 RepID=J3EVS3_9EURY
Cytochrome c oxidase subunit II {ECO:0000313|EMBL:EJN58782.1}; TaxID=1210908 species="Archaea; Euryarchaeota; Halobacteria; Haloferacales; Haloferacaceae.;" source="Halogranum salarium B-1.;"
cytochrome C oxidase subunit II
13_2_20cm_2_scaffold_539_24
RBG_16_KB1_OP1_55_9_curated, KB1, Bacteria

Not on your lists

comp(25788..26273)
DNA (486bp) protein (162aa)
ctaA; heme A synthase (EC:1.3.-.-) Tax=RBG_16_KB1_OP1_55_9_curated
protoheme IX farnesyltransferase (Heme O synthase) (HemeB farnesyltransferase) (EC:2.5.1.-); K02301 protoheme IX farnesyltransferase [EC:2.5.1.-] id=14628566 bin=bin8_Chloro species=Thermomicrobium roseum genus=Thermomicrobium taxon_order=Thermomicrobiales taxon_class=Thermomicrobia phylum=Chloroflexi tax=bin8_Chloro organism_group=Chloroflexi
heme A synthase
13_2_20cm_2_scaffold_539_25
RBG_13_Bathyarchaeota_46_16b_curated, Bathyarchaeota, Archaea

Not on your lists

comp(26322..27023)
DNA (702bp) protein (234aa)
triosephosphate isomerase; K01803 triosephosphate isomerase (TIM) [EC:5.3.1.1] Tax=RBG_13_Bathyarchaeota_46_16b_curated
Triosephosphate isomerase n=1 Tax=Pyrococcus yayanosii (strain CH1 / JCM 16557) RepID=F8AG09_PYRYC
triosephosphate isomerase
13_2_20cm_2_scaffold_539_26
RBG_16_Thaumarchaeota_49_8_curated, Thaumarchaeota, TACK, Archaea

Not on your lists

comp(27083..27874)
DNA (792bp) protein (264aa)
fructose-bisphosphate aldolase (EC:4.1.2.13); K01623 fructose-bisphosphate aldolase, class I [EC:4.1.2.13] Tax=RBG_16_Thaumarchaeota_49_8_curated
fructose-bisphosphate aldolase (EC:4.1.2.13)
Fructose-bisphosphate aldolase n=1 Tax=Vulcanisaeta distributa (strain DSM 14429 / JCM 11212 / NBRC 100878 / IC-017) RepID=E1QTX7_VULDI
13_2_20cm_2_scaffold_539_27
RBG_16_Euryarchaeota_62_10_curated, Euryarchaeota, Archaea

Not on your lists

27982..29376
DNA (1395bp) protein (465aa)
NADH oxidase; K03885 NADH dehydrogenase [EC:1.6.99.3] Tax=RBG_16_Euryarchaeota_62_10_curated
NADH oxidase (NoxA-2) n=1 Tax=Pyrococcus abyssi (strain GE5 / Orsay) RepID=Q9V0X9_PYRAB
NADH oxidase (noxA-2)
13_2_20cm_2_scaffold_539_28
Candidatus Caldiarchaeum subterraneum, Candidatus Caldiarchaeum, Thaumarchaeota, Archaea

Not on your lists

29386..30330
DNA (945bp) protein (315aa)
D-3-phosphoglycerate dehydrogenase (EC:1.1.1.95)
D-3-phosphoglycerate dehydrogenase {ECO:0000313|EMBL:BAJ47304.1}; EC=1.1.1.95 {ECO:0000313|EMBL:BAJ47304.1};; TaxID=311458 species="Archaea; Thaumarchaeota; unclassified Thaumarchaeota; Candidatus Cal
D-3-phosphoglycerate dehydrogenase n=1 Tax=Candidatus Caldiarchaeum subterraneum RepID=E6N4T5_9ARCH
13_2_20cm_2_scaffold_539_29
RBG_16_Archaea_50_20_curated, Archaea

Not on your lists

comp(30761..32089)
DNA (1329bp) protein (443aa)
asparaginyl-tRNA synthetase; K01893 asparaginyl-tRNA synthetase [EC:6.1.1.22] Tax=RBG_16_Archaea_50_20_curated
asparaginyl-tRNA synthetase (EC:6.1.1.22)
Asparaginyl-tRNA synthetase n=1 Tax=Candidatus Caldiarchaeum subterraneum RepID=E6N8T9_9ARCH
13_2_20cm_2_scaffold_539_30
RBG_13_Bathyarchaeota_38_9_curated, Bathyarchaeota, Archaea

Not on your lists

32100..32708
DNA (609bp) protein (203aa)
Uncharacterized protein n=1 Tax=Thermofilum sp. 1910b RepID=S5ZL81_9CREN
hypothetical protein Tax=RBG_13_Bathyarchaeota_38_9_curated
hypothetical protein
Displaying items 1-30 of 53 in total

View Taxonomy